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Jungfraujoch/image_analysis/geom_refinement/Calibrants.h
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v1.0.0-rc.166 (#76)
* `rugnux --mode calibration` writes `<prefix>.json` beside the `.poni`, whose `dataset_settings` member is a `jfjoch_broker` `dataset_settings` body as it stands.
* `rugnux` and `jfjoch_viewer` read PILATUS miniCBF sweeps natively, without conversion.
* Masters written by other facilities open, including Eiger 1.x and third-party NXmx variants.
* `rugnux` measures the beam centre on every run, and indexes with it when the file's value indexes nothing.
* A detector swung out on a 2theta arm is placed where the file says it stands, and the calibration can hold the tilt fixed.
* `rugnux` writes the unmerged MTZ by default, and a P1 merge beside it, so a wrong space group can be re-merged without reprocessing.
* Significant improvements to symmetry handling in `rugnux`: the lattice, the point group, the setting and the systematic absences.
* The `rugnux` report gives the resolution the CC1/2 fit reached, beside the range the reflections were written to.
* The `rugnux` report gives the twinning statistics measured before the space group was decided, beside the ones measured after.
* The `rugnux` report gives the strong-direction diffraction limit, and warns when CC1/2 is not monotone with resolution.
* `rugnux` ranks screw axes on the evidence their absences carry, rather than on how many control reflections a candidate happens to have.
* Twinning is no longer reported when the L-test contradicts it.
* The `rugnux` report gives the detector tilt, the measured tilt and the direct beam beside the beam centre, and a post-refined beam centre is judged against the run's own measurement rather than the file's.
* `--no-refine-tilt` holds the detector tilt at the value in the file, instead of zeroing it, when the calibration starts from the spots.
* The `jfjoch_viewer` grid scan view draws the cells in the proportion of the scan steps, so the map has the shape of the scanned area.

Reviewed-on: #76
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
2026-09-02 21:17:31 +02:00

36 lines
1.7 KiB
C++

// SPDX-FileCopyrightText: 2026 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
// SPDX-License-Identifier: GPL-3.0-only
#pragma once
#include <optional>
#include <string>
#include <vector>
#include "../../common/UnitCell.h"
#include "AssignSpotsToRings.h" // ReflectionCondition
// The powder standards the detector geometry can be calibrated against, shared by
// rugnux --mode=calibration and the viewer's powder-calibration panel.
struct Calibrant {
std::string name; // as offered on the command line and in the GUI (matched case-insensitively)
std::optional<UnitCell> cell; // unset for ice - see CalibrantRings()
// The cell alone does not give the rings: a centred lattice extinguishes some of them, and the
// innermost ring the fit starts from is the first one that is NOT extinguished.
ReflectionCondition condition = ReflectionCondition::All;
};
const std::vector<Calibrant> &Calibrants();
// The rings a calibrant produces, as q = 2*pi/d in 1/A - the unit CalculateXtalRings returns and
// RingOptimizerInput::q_expected expects - sorted ascending. Empty if the name is not a calibrant.
//
// A ring LIST rather than a UnitCell because ice cannot be given as one: hexagonal ice is P6_3/mmc, so
// enumerating hkl from its cell would emit rings the oxygen sublattice extinguishes, while the entries
// of ICE_RING_RES_A are ring positions that carry intensity - measured to 1.522 A, and calculated with
// that extinction taken out below it.
std::vector<float> CalibrantRings(const std::string &name);
// "lab6, agbh, ceo2, si, ice" - for the error message when a name is not one of them.
std::string CalibrantNameList();