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Jungfraujoch/docker/ubuntu2404/Dockerfile
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leonarski_f 9aae0c2ba7
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v1.0.0-rc.169 (#79)
* Building Jungfraujoch no longer needs zlib or Eigen installed on the machine, and the dependencies the build fetches are pinned and updated to current releases.
* rugnux: improvements in indexing, lattice selection and geometry post-refinement, which index crystals that previously returned no lattice and keep the better of the two geometries a run measures.
* rugnux: improvements in beam-centre measurement, beam-stop detection and space-group determination.
* rugnux: the unit cell reported with a determined space group now obeys that group - a cell whose symmetry was confirmed from the intensities is re-refined under it, and a cell the group cannot describe is reported with a warning rather than as it stands.
* rugnux drops the stretches of a rotation sweep whose removal measurably improves the merged intensities and reports what became of every frame, and decides the resolution cut on the crystal's own diffraction rather than on its ice rings.
* The rugnux results report is machine-readable - every line that is not `KEY= value` data starts with `#` - and states the build it was written by, its authorship and its terms of use (`REPORT_VERSION= 8`).
* `jfjoch_viewer`: improvements in the file manager (CBF frames beside HDF5 datasets, a remembered root), the dataset plots, the inspector and the image statistics, plus a settable font size, a view of the rugnux results report, usable performance over a remote display (`ssh -X`) and a reset of all settings to defaults; the reciprocal-space window is removed.
* Broker fixes around DECTRIS collections and dark-mask calibration: re-initialising after a run that never started no longer freezes the broker, a cancelled calibration is abandoned instead of reported as done, and a collection whose start message never arrives ends by itself.

Reviewed-on: #79
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
2026-09-15 17:09:31 +02:00

210 lines
9.3 KiB
Docker

# Ubuntu 24.04 (Noble) base with CUDA 13 devel toolchain
FROM nvidia/cuda:13.3.0-devel-ubuntu24.04
LABEL authors="leonarski_f"
ENV DEBIAN_FRONTEND=noninteractive
ARG OPENSSL_VERSION=3.5.4
ARG QT_VERSION=6.11.1
ARG DBUS_VERSION=1.14.10
ARG NODE_MAJOR=22
ARG EIGEN_VERSION=3.4.0
# HDF5, libtiff and libjpeg-turbo are built by the jungfraujoch CMake itself (FetchContent /
# ExternalProject). Eigen is an external find_package(Eigen3 3.4) dependency, installed from source
# below (3.4.x is required; Eigen's same-major-version rule rejects 5.x). nasm is required by the
# project's libjpeg-turbo ExternalProject for SIMD-accelerated JPEG.
# Update base and install toolchain + static-Qt build dependencies
# (XCB/X11/OpenGL/EGL/DBus/fontconfig/freetype/zlib headers needed to build static Qt).
#
# arm64 is enabled as a second dpkg architecture here so this one image can also CROSS-COMPILE the
# rugnux CLI for aarch64 (DGX Spark GB10 / Grace Hopper GH200 -- both arm64 SBSA). Noble's deb822
# ubuntu.sources carries no Architectures: field, so a bare `dpkg --add-architecture arm64` sends apt
# to archive.ubuntu.com for arm64 indexes and 404s on every one; arm64 is published on
# ports.ubuntu.com instead. Pin the stock entries to amd64 and add a ports entry for arm64.
RUN set -eux; \
dpkg --add-architecture arm64; \
sed -i 's/^Components: main/Architectures: amd64\nComponents: main/' /etc/apt/sources.list.d/ubuntu.sources; \
printf '\nTypes: deb\nURIs: http://ports.ubuntu.com/ubuntu-ports\nSuites: noble noble-updates noble-security\nComponents: main restricted universe multiverse\nArchitectures: arm64\nSigned-By: /usr/share/keyrings/ubuntu-archive-keyring.gpg\n' \
>> /etc/apt/sources.list.d/ubuntu.sources
RUN set -eux; \
apt-get update; \
apt-get install -y --no-install-recommends \
ca-certificates \
curl \
wget \
git \
which \
tar \
xz-utils \
build-essential \
python3 \
python3-venv \
python3-requests \
python3.12 \
python3.12-venv \
perl \
pkg-config \
gdb \
file \
nasm \
dpkg-dev \
fakeroot \
libnuma-dev \
libkrb5-dev \
libxcb1-dev \
libx11-dev \
libxext-dev \
libxrender-dev \
libxi-dev \
libxrandr-dev \
libxcursor-dev \
libxfixes-dev \
libxinerama-dev \
libxkbcommon-dev \
libxkbcommon-x11-dev \
libx11-xcb-dev \
libxcb-shape0-dev \
libxcb-sync-dev \
libxcb-xfixes0-dev \
libxcb-image0-dev \
libxcb-icccm4-dev \
libxcb-keysyms1-dev \
libxcb-render-util0-dev \
libxcb-util-dev \
libxcb-randr0-dev \
libxcb-xkb-dev \
libxcb-shm0-dev \
libxcb-cursor0 \
libxcb-cursor-dev \
libxcb-glx0-dev \
libgl1-mesa-dev \
libglx-dev \
libegl1-mesa-dev \
libexpat1-dev \
zlib1g-dev \
libfontconfig1-dev \
libdrm-dev \
libglvnd-dev \
libassimp-dev \
libfreetype6-dev; \
apt-get clean; \
rm -rf /var/lib/apt/lists/*
# Git over HTTP/1.1: the HTTP/2 multiplexing used by default makes clones from some servers
# (and through the PSI proxy) fail mid-transfer with "RPC failed; curl 92 HTTP/2 stream ... not
# closed cleanly". Every source dependency below and the project's own FetchContent step clone over
# HTTPS, so set this system-wide for the image.
RUN git config --system http.version HTTP/1.1
# Use the default GCC/G++ (gcc-13 on Noble, supported by CUDA 13.3)
ENV CC=/usr/bin/gcc
ENV CXX=/usr/bin/g++
# Build a static OpenSSL
# Everything built from source below is identical in all four build images, so it lives in
# docker/common/ and is run from there -- one copy to change, not four. The build context is
# docker/ (see build_images.sh), which is what puts common/ in reach of this COPY.
ARG CMAKE_VERSION=3.31.8
ARG CMAKE_SHA256=630615d8e98ac33eba7fbe472626dff5c899c85af3c024585ae109166a6909d0
ARG NINJA_VERSION=1.13.2
ARG NINJA_SHA256=5749cbc4e668273514150a80e387a957f933c6ed3f5f11e03fb30955e2bbead6
COPY common/ /opt/jfjoch-common/
RUN /opt/jfjoch-common/install-cmake.sh
RUN /opt/jfjoch-common/install-ninja.sh
# Ahead of the distro path: these are the CMake and Ninja every later step and every CI build uses.
ENV PATH=/opt/cmake-${CMAKE_VERSION}/bin:/opt/ninja-${NINJA_VERSION}/bin:${PATH}
RUN /opt/jfjoch-common/build-openssl.sh
# Expose static OpenSSL to CMake/pkg-config
ENV OPENSSL_ROOT_DIR=/opt/openssl-${OPENSSL_VERSION}
ENV PKG_CONFIG_PATH=${OPENSSL_ROOT_DIR}/lib/pkgconfig:${OPENSSL_ROOT_DIR}/lib64/pkgconfig
# Install Node.js (NodeSource)
RUN set -eux; \
curl -fsSL https://deb.nodesource.com/setup_${NODE_MAJOR}.x | bash -; \
apt-get update; \
apt-get install -y --no-install-recommends nodejs; \
apt-get clean; \
rm -rf /var/lib/apt/lists/*; \
node --version; npm --version; (corepack enable || true)
# Static libdbus: link D-Bus into the viewer (Qt6::DBus) instead of pulling libdbus-1.so.3 at runtime.
# A distro libdbus-1.so drags in libsystemd (-> libzstd/liblz4/libcap/libgcrypt/libgpg-error) and
# libselinux (-> libpcre2). Disabling those integrations makes libdbus-1.a depend on ~libc alone, so
# that whole runtime .so tail disappears while the viewer keeps its single-instance / remote-control
# D-Bus feature -- it is a pure session-bus client (registers a name + exports an adaptor), so the
# daemon-side systemd/selinux features are irrelevant. Static-only install (no .so); the Qt build
# finds it through find_package(DBus1) via the -DDBus1_DIR hint (the CMake package config dbus
# installs, which imports libdbus-1.a). Built -fPIC (--with-pic) so the archive links into Qt's PIE
# tools (qdbusxml2cpp). expat is only a configure-time dep of the dbus daemon; the client libdbus-1
# links neither expat nor systemd.
RUN /opt/jfjoch-common/build-dbus.sh
# Put the static libdbus pkgconfig ahead of the system one so Qt6::DBus resolves to the .a
ENV PKG_CONFIG_PATH=/opt/dbus-${DBUS_VERSION}-static/lib/pkgconfig:${PKG_CONFIG_PATH}
# Build and install static Qt with Core, Gui, Widgets, Charts, DBus
ARG QT_PREFIX=/opt/qt-${QT_VERSION}-static
RUN /opt/jfjoch-common/build-qt.sh
# Eigen 3.4 (header-only) -- external find_package(Eigen3 3.4) dependency, installed to /opt/eigen-3.4.
RUN /opt/jfjoch-common/install-eigen.sh
# Make Qt, the static libdbus, and Eigen discoverable by CMake. The static libdbus prefix is
# required here (not only at Qt build time): every Qt6::DBus consumer re-runs find_package(DBus1)
# through Qt's exported config, so DBus1Config.cmake must be on CMAKE_PREFIX_PATH for the viewer build.
ENV CMAKE_PREFIX_PATH=/opt/qt-${QT_VERSION}-static:/opt/dbus-${DBUS_VERSION}-static:/opt/eigen-3.4
# ---------------------------------------------------------------------------------------------
# aarch64 cross-compilation support (rugnux only -- the viewer is not cross-built).
#
# crossbuild-essential-arm64 the aarch64 gcc/g++.
# qemu-user-static HDF5 runs two try_run() probes (config/ConfigureChecks.cmake) that
# need CMAKE_CROSSCOMPILING_EMULATOR. libzmq guards its own run-checks
# with NOT CMAKE_CROSSCOMPILING; Ceres, libtiff, zstd, Catch2, spdlog,
# cpp-httplib, FFTW and ffbidx have no run-checks at all.
# binutils-aarch64-linux-gnu reading aarch64 ELF on the build host.
# :arm64 libraries ZLIB is one of the project's two external dependencies (Eigen, the
# other, is header-only and installed above); OpenSSL is needed by the
# libcurl the build fetches.
# ---------------------------------------------------------------------------------------------
RUN set -eux; \
apt-get update; \
apt-get install -y --no-install-recommends \
crossbuild-essential-arm64 binutils-aarch64-linux-gnu qemu-user-static \
zlib1g-dev:arm64 libssl-dev:arm64; \
apt-get clean; \
rm -rf /var/lib/apt/lists/*
# CUDA cross target tree -> /usr/local/cuda/targets/sbsa-linux, beside the image's x86_64 tree.
# These packages are NOT in the x86_64 CUDA repo (it publishes none) and NOT in the sbsa repo (that
# is the NATIVE arm64 one a Spark or GH200 installs locally). They have their own repo and keyring:
# repos/ubuntu2404/cross-linux-sbsa/
# repos/ubuntu2404/cross-linux-aarch64/ also exists -- that is the Tegra/Jetson tree, not this one.
RUN set -eux; \
cd /tmp; \
wget -q https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2404/cross-linux-sbsa/cuda-keyring_1.1-1_all.deb; \
dpkg -i cuda-keyring_1.1-1_all.deb; rm cuda-keyring_1.1-1_all.deb; \
apt-get update; \
V=$(nvcc --version | sed -nE 's/.*release ([0-9]+)\.([0-9]+).*/\1-\2/p'); \
apt-get install -y --no-install-recommends \
cuda-cudart-cross-sbsa-$V cuda-crt-cross-sbsa-$V \
cuda-culibos-cross-sbsa-$V libcufft-cross-sbsa-$V; \
test -f /usr/local/cuda/targets/sbsa-linux/lib/libcufft_static.a; \
apt-get clean; \
rm -rf /var/lib/apt/lists/*
# aarch64-sbsa.cmake is deliberately NOT copied in: the build passes it from the checkout, so the
# toolchain is versioned with the source it configures and needs no image rebuild to change.
# Set workdir for your project
WORKDIR /workspace
# Default entrypoint: interactive shell
CMD ["/bin/bash", "-l"]
RUN rm -rf /opt/jfjoch-common