leonarski_f
d6389e12da
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This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use. * jfjoch_process: Major rotation (rot3d) data processing overhaul - robust profile-fit integration, Cauchy-loss scaling with optional absorption surface, de-novo indexing and space-group/centering determination fixes, and merging statistics + ISa in the mmCIF output. * jfjoch_process: Add EXPERIMENTAL ice-ring detection (--detect-ice-rings) that excludes ice reflections from scaling. * Compression: Add BSHUF_ZSTD_RLE_HUFF, make compression size-aware (drop frames that don't fit rather than aborting), and add the jfjoch_recompress tool. * jfjoch_viewer: Report "Multiple lattices detected" and grey out "Analyze dataset" on a live connection. * jfjoch_broker: Write smargon chi/phi goniometer positions to NXmx; read sensor thickness/material from HDF5 metadata. * CI: Build Windows (CUDA and non-CUDA) installers.Reviewed-on: #66 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
53 lines
2.0 KiB
C++
53 lines
2.0 KiB
C++
// SPDX-FileCopyrightText: 2024 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#pragma once
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#include <vector>
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#include <mutex>
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#include "MultiLinePlot.h"
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#include "AzimuthalIntegrationMapping.h"
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#include "../fpga/pcie_driver/jfjoch_fpga.h" // DeviceOutput
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class AzimuthalIntegrationProfile {
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mutable std::mutex m;
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std::vector<float> sum;
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std::vector<float> sum2;
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std::vector<uint64_t> count;
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std::vector<float> bin_to_q;
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std::vector<float> bin_to_d;
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std::vector<float> bin_to_2theta;
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std::vector<float> bin_to_phi;
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std::vector<float> bin_to_q_1d;
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int32_t q_bins;
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int32_t azim_bins;
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std::string title;
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const std::vector<float>& GetXAxis(PlotAzintUnit unit) const;
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public:
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explicit AzimuthalIntegrationProfile(const AzimuthalIntegrationMapping &mapping);
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void Clear(const AzimuthalIntegrationMapping &mapping);
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void SetTitle(const std::string& input);
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void Add(const DeviceOutput &result);
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void Add(const std::vector<float> &sum,
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const std::vector<float> &sum2,
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const std::vector<uint32_t> &count);
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void Add(int64_t bin, int64_t value);
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std::vector<float> GetResult() const;
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std::vector<float> GetStd() const;
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std::vector<uint64_t> GetPixelCount() const;
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std::vector<float> GetResult1D() const;
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float GetMeanValueOfBins(uint16_t min_bin, uint16_t max_bin) const;
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float GetBkgEstimate(const AzimuthalIntegrationSettings& settings) const;
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// Single per-image ice indicator: the strongest hexagonal-ice ring's intensity relative to the smooth
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// radial background interpolated under it (1 = no ice, >1 = ice). See the .cpp for the background fit.
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float GetIceRingScore(const AzimuthalIntegrationSettings& settings, float half_width_q) const;
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MultiLinePlot GetPlot(bool force_1d = false, PlotAzintUnit plot_unit = PlotAzintUnit::Q_recipA) const;
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AzimuthalIntegrationProfile& operator+=(const AzimuthalIntegrationProfile& profile); // Not thread safe
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};
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