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This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use. * **rugnux: significantly better quality of results, and faster.** A large rework of integration, scaling, merging, geometry refinement and space-group determination, together with measurements the program previously made no attempt at - the direct beam before indexing, the beam stop, the goniometer rotation scale, and the stretches of a sweep the crystal did not deliver. A rotation dataset typically gains observations at better <I/sigma> and R_meas, and every `mx` and `scale` run writes a `<prefix>_report.txt` results report modelled on XDS's `CORRECT.LP`. Many defaults moved with it: spot detection is self-calibrating, beam-stop detection and rotation geometry post-refinement are on, resolution limits default to as far as the detector reaches, and ice-ring handling engages only where the crystal is measured to have ice. * **jfjoch_viewer:** the beam-stop shadow, the detector calibration and the beam-centre measurement are reachable from "Analyze dataset"; the settings panel reports how the sample moved and how polarized the beam was; image rendering and interaction are faster. * **Performance:** bitshuffle+LZ4 images are decoded on the GPU rather than on the host, with the bitshuffle inverse fused into preprocessing so the decompressed frame is never held in device memory. * **Broker, writer, packaging and build:** image-slot lifetime and locking fixes, per-image datasets sized by the images actually written, the Debian/Ubuntu broker package renamed to `jfjoch`, and `image_analysis` compiling under MSVC again. **Breaking change to the rugnux command line:** * `--azint-only` and `--scale` are **removed**, replaced by `--mode azint` and `--mode scale`; the full pipeline is `--mode mx` and remains the default. A script passing the old flags now fails with the list of valid modes rather than silently running the wrong one. * `-t`/`--stride` is **refused on rotation data**: skipping frames cuts every reflection's rocking curve, so the combined fulls and their partiality would be measured over frames the sweep never recorded. Select a contiguous range with `-s`/`-e` instead. `--mode azint` and `--force-still` still take a stride. **Breaking changes to OpenAPI** - regenerate the client (`jfjoch-client` 1.0.0-rc.161, `frontend/src/client`) or read the affected fields as optional: * `image_scale_b` is removed from the `plot_type` enum, so a client requesting that plot now gets an error rather than a curve. * `azim_int_settings.high_q_recipA`, `spot_finding_settings.high_resolution_limit` and `spot_finding_settings.low_resolution_limit` are no longer `required`. All three mean "no limit at that end" when unset and are omitted from the response instead of carrying a placeholder value, which raises in a client generated from an rc.160-or-earlier spec. A value of 0 is still accepted and means the same thing. **Breaking changes to the stored formats** - a consumer reading these fields must treat them as optional: * The per-image image-scale B factor is no longer computed, so `/entry/MX/imageScaleBFactor` is absent from newly written HDF5 files and the corresponding key is absent from the CBOR DataMessage and END blocks. Files written by rc.160 and earlier still contain it and still open; nothing in the pipeline reads it any more. * `_reflns.jfjoch_diffrn_ISa` now carries the whole-range `1/sqrt(a*b)` that XDS's ISa denotes, and the error-model `a` and `b` are reported in XDS's convention; the strong-reflection asymptote moves to `_reflns.jfjoch_diffrn_ISa_asymptotic`. **A file written by an earlier version carries the asymptote under the plain `ISa` name.** Reviewed-on: #71 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
154 lines
4.8 KiB
CMake
154 lines
4.8 KiB
CMake
# git header
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# the commit's SHA1, and whether the building workspace was dirty or not
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FIND_PACKAGE(Git)
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EXECUTE_PROCESS(COMMAND
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"${GIT_EXECUTABLE}" describe --match=NeVeRmAtCh --always --abbrev=8
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WORKING_DIRECTORY "${CMAKE_SOURCE_DIR}"
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OUTPUT_VARIABLE GIT_SHA1
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ERROR_QUIET OUTPUT_STRIP_TRAILING_WHITESPACE)
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# the date of the commit
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EXECUTE_PROCESS(COMMAND
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"${GIT_EXECUTABLE}" log -1 --format=%ad --date=local
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WORKING_DIRECTORY "${CMAKE_SOURCE_DIR}"
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OUTPUT_VARIABLE GIT_DATE
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ERROR_QUIET OUTPUT_STRIP_TRAILING_WHITESPACE)
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set (THREADS_PREFER_PTHREAD_FLAG ON)
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find_package (Threads REQUIRED)
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MESSAGE(STATUS "Jungfraujoch git SHA1: ${GIT_SHA1}")
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MESSAGE(STATUS "Jungfraujoch git date: ${GIT_DATE}")
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MESSAGE(STATUS "Jungfraujoch version: ${JFJOCH_VERSION}")
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CONFIGURE_FILE("${CMAKE_CURRENT_SOURCE_DIR}/GitInfo.cpp.in" "${CMAKE_CURRENT_BINARY_DIR}/GitInfo.cpp" @ONLY)
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ADD_LIBRARY(JFJochVersion STATIC
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${CMAKE_CURRENT_BINARY_DIR}/GitInfo.cpp GitInfo.h)
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set_target_properties(JFJochVersion PROPERTIES
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POSITION_INDEPENDENT_CODE ON
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)
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ADD_LIBRARY(JFJochLogger STATIC
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Logger.cpp Logger.h
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)
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TARGET_LINK_LIBRARIES(JFJochLogger PUBLIC spdlog::spdlog JFJochVersion)
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ADD_LIBRARY(JFJochZMQ STATIC ZMQWrappers.cpp ZMQWrappers.h)
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ADD_LIBRARY(JFJochCommon STATIC
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Coord.cpp Coord.h
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DiffractionExperiment.cpp DiffractionExperiment.h
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RawToConvertedGeometry.h
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JFJochException.h
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Definitions.h
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ThreadSafeFIFO.h
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DiffractionSpot.cpp DiffractionSpot.h
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StatusVector.cpp StatusVector.h
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SpotToSave.h
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NetworkAddressConvert.h NetworkAddressConvert.cpp
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DetectorGeometry.h
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DetectorModuleGeometry.cpp DetectorModuleGeometry.h
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DetectorSetup.h DetectorSetup.cpp ZeroCopyReturnValue.h Histogram.h DiffractionGeometry.h
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CUDAWrapper.cpp CUDAWrapper.h
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ADUHistogram.cpp ADUHistogram.h
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RawToConvertedGeometryCore.h
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Plot.h
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../fpga/pcie_driver/jfjoch_fpga.h
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DatasetSettings.cpp DatasetSettings.h
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ROIMap.cpp ROIMap.h
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ROIElement.cpp ROIElement.h
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ROICircle.cpp ROICircle.h
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ROIBox.cpp ROIBox.h
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ImageBuffer.cpp ImageBuffer.h
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time_utc.h
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PixelMask.cpp PixelMask.h
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InstrumentMetadata.cpp InstrumentMetadata.h
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ImageFormatSettings.cpp
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ImageFormatSettings.h
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DetectorSettings.cpp
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DetectorSettings.h
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AzimuthalIntegrationSettings.cpp
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AzimuthalIntegrationSettings.h
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AzimuthalIntegrationProfile.h
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AzimuthalIntegrationProfile.cpp
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AzimuthalIntegrationMapping.h
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AzimuthalIntegrationMapping.cpp
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CheckPath.h
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AutoIncrVector.h
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ModuleSummation.cpp
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ModuleSummation.h
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ROIDefinition.cpp
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ROIDefinition.h
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ZeroCopyReturnValue.cpp
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ColorScale.cpp ColorScale.h
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FileWriterSettings.cpp
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FileWriterSettings.h
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MovingAverage.cpp
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MovingAverage.h
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DiffractionGeometry.cpp
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ROIAzimuthal.cpp
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ROIAzimuthal.h
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print_license.h
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DetectorGeometryModular.cpp
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DetectorGeometryModular.h
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DetectorGeometryFixed.cpp
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DetectorGeometryFixed.h
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GridScanSettings.cpp
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GridScanSettings.h
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JFJochMessages.h
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GoniometerAxis.cpp
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GoniometerAxis.h
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CompressedImage.cpp
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CompressedImage.h
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Reflection.h
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MultiLinePlot.cpp
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MultiLinePlot.h
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IndexingSettings.cpp
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IndexingSettings.h
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CrystalLattice.cpp
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CrystalLattice.h
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ScanResult.cpp
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ScanResult.h
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ScanResultGenerator.cpp
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ScanResultGenerator.h
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BraggIntegrationSettings.cpp
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BraggIntegrationSettings.h
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SpotToSave.cpp
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XrayFluorescenceSpectrum.cpp
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XrayFluorescenceSpectrum.h
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ResolutionShells.cpp
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ResolutionShells.h
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DarkMaskSettings.cpp
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DarkMaskSettings.h
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TopPixels.cpp
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TopPixels.h
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hkl_key.h
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JfjochTCP.h
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BrokerStatus.h
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ScalingSettings.cpp
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ScalingSettings.h
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UnitCell.cpp
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UnitCell.h
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CorrelationCoefficient.cpp
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CorrelationCoefficient.h
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JFJochReceiverPlots.cpp
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JFJochReceiverPlots.h
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)
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# librt is Linux/glibc-only (older glibc keeps clock_gettime/timer_*/sem_* there, and some
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# distros are picky about it for pthreads); it does not exist on macOS/Windows.
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TARGET_LINK_LIBRARIES(JFJochCommon JFJochLogger Compression JFCalibration gemmi Threads::Threads
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$<$<PLATFORM_ID:Linux>:rt>)
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TARGET_LINK_LIBRARIES(JFJochZMQ "$<BUILD_INTERFACE:libzmq-static>")
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IF (JFJOCH_CUDA_AVAILABLE)
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TARGET_SOURCES(JFJochCommon PRIVATE CUDAWrapper.cu )
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TARGET_LINK_LIBRARIES(JFJochCommon CUDA::cudart_static
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${CMAKE_DL_LIBS} $<$<PLATFORM_ID:Linux>:rt>)
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ENDIF()
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