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* Rugnux: Rotation processing recovers most of the speed lost since 1.0.0-rc.180; live processing in jfjoch_broker finishes sooner. * Rugnux: More reliable rotation processing and indexing, including small molecules and supercells. * Rugnux: More robust serial data and model refinement; molecular replacement handles multi-chain models. * jfjoch_broker (experimental): Live serial processing keeps the detector geometry fixed for the whole run. * jfjoch_broker: Pixel sum without an FPGA, a mask bit for inactive pixels, and several stability fixes. * jfjoch_broker: Rotation indexing and quick integration moved to rugnux live mode; their API settings are deprecated and ignored. * jfjoch_broker, Rugnux: Azimuthal integration can use logarithmic (log10) Q bins or a given number of bins, set from the API, the web interface and the Rugnux command line. * jfjoch_viewer: Build and display fixes; the README is rewritten. Reviewed-on: #95 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
270 lines
13 KiB
C++
270 lines
13 KiB
C++
// SPDX-FileCopyrightText: 2026 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#include <catch2/catch_all.hpp>
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#include <httplib.h>
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#include <nlohmann/json.hpp>
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#include <chrono>
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#include <thread>
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#include "../broker/JFJochBrokerHttp.h"
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#include "../common/DetectorModules.h"
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// The tokens given to /start guard the endpoints that expose the dataset, and nothing else, for as
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// long as that dataset is the current one. Runs the real HTTP layer against a broker with no
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// receiver: /start is then accepted and finishes at once with nothing to acquire.
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TEST_CASE("JFJochBrokerHttp_BearerTokens", "[broker]") {
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DiffractionExperiment experiment;
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SpotFindingSettings spot_finding;
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JFJochBrokerHttp broker(experiment, spot_finding);
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broker.AddDetectorSetup(DetJF4M());
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httplib::Server server;
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broker.attach(server);
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const int port = server.bind_to_any_port("127.0.0.1");
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REQUIRE(port > 0);
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// Stopped and joined however the test ends, so a failed REQUIRE does not abort on a joinable thread.
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struct ServerThread {
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httplib::Server &server;
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std::thread thread;
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explicit ServerThread(httplib::Server &s) : server(s), thread([&s] { s.listen_after_bind(); }) {}
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~ServerThread() { server.stop(); thread.join(); }
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} server_thread(server);
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server.wait_until_ready();
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httplib::Client client("127.0.0.1", port);
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const httplib::Headers good{{"Authorization", "Bearer secret-1"}};
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const httplib::Headers other{{"Authorization", "Bearer secret-2"}};
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const httplib::Headers wrong{{"Authorization", "Bearer nope"}};
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auto start = [&](const nlohmann::json &extra) {
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nlohmann::json body = {{"beam_x_pxl", 1000}, {"beam_y_pxl", 1000},
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{"detector_distance_mm", 100}, {"incident_energy_keV", 12.4},
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{"images_per_trigger", 1}, {"ntrigger", 1},
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{"file_prefix", "protected_run"}};
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body.update(extra);
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auto res = client.Post("/start", body.dump(), "application/json");
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REQUIRE(res);
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REQUIRE(res->status == 200);
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// With no receiver the measurement thread idles for 30 s before the run ends; wait it out.
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for (int i = 0; i < 120; i++) {
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auto status = client.Get("/status");
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REQUIRE(status);
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if (nlohmann::json::parse(status->body).at("state") == "Idle")
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return;
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std::this_thread::sleep_for(std::chrono::milliseconds(500));
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}
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FAIL("broker did not return to Idle after the start");
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};
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REQUIRE(client.Post("/initialize")->status == 200);
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// Nothing started yet: open, whatever the header says.
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REQUIRE(client.Get("/statistics/data_collection")->status == 200);
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REQUIRE(client.Get("/statistics/data_collection", wrong)->status == 200);
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REQUIRE(client.Get("/statistics")->status == 200);
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start({{"tokens", {"secret-1", "secret-2"}}});
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SECTION("protected endpoints refuse without a token and say nothing about the dataset") {
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for (const char *path: {"/statistics/data_collection", "/result/scan", "/image_buffer/start.cbor",
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"/image_buffer/image.cbor?id=0", "/image_buffer/image.tiff?id=0",
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"/image_buffer/image.jpeg?id=0", "/preview/plot?type=bkg_estimate",
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"/preview/plot.bin?type=bkg_estimate", "/live/events",
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"/rugnux/status", "/rugnux/model.cif", "/rugnux/map.ccp4?type=2fofc"}) {
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INFO(path);
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auto res = client.Get(path);
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REQUIRE(res);
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REQUIRE(res->status == 401);
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REQUIRE(res->get_header_value("WWW-Authenticate") == "Bearer");
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REQUIRE(res->body.find("protected_run") == std::string::npos);
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REQUIRE(client.Get(path, wrong)->status == 401);
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}
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// Live rugnux settings and its model prepare the next collection: open like the rest of the configuration.
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REQUIRE(client.Get("/config/rugnux")->status == 200);
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REQUIRE(client.Put("/config/rugnux", R"({"enable":false})", "application/json")->status == 200);
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REQUIRE(client.Put("/config/rugnux/model", "", "application/octet-stream")->status == 400);
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REQUIRE(client.Delete("/config/rugnux/model")->status == 200);
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}
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SECTION("either token opens them") {
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auto res = client.Get("/statistics/data_collection", good);
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REQUIRE(res->status == 200);
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REQUIRE(res->body.find("protected_run") != std::string::npos);
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REQUIRE(client.Get("/statistics/data_collection", other)->status == 200);
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REQUIRE(client.Get("/preview/plot?type=bkg_estimate", good)->status == 200);
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REQUIRE(client.Get("/rugnux/status", good)->status == 200);
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// No live run placed a model: nothing to serve, but the token is accepted.
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REQUIRE(client.Get("/rugnux/model.cif", good)->status == 404);
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REQUIRE(client.Get("/rugnux/map.ccp4", good)->status == 404);
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REQUIRE(client.Get("/rugnux/map.ccp4?type=fofc", good)->status == 404);
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REQUIRE(client.Get("/rugnux/map.ccp4?type=anom", good)->status == 404);
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REQUIRE(client.Get("/rugnux/map.ccp4?type=anomalous", good)->status == 400);
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}
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SECTION("the aggregate statistics drop the measurement block instead of refusing") {
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auto res = client.Get("/statistics");
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REQUIRE(res->status == 200);
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REQUIRE_FALSE(nlohmann::json::parse(res->body).contains("measurement"));
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REQUIRE(res->body.find("protected_run") == std::string::npos);
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auto with_token = client.Get("/statistics", good);
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REQUIRE(with_token->status == 200);
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REQUIRE(nlohmann::json::parse(with_token->body).contains("measurement"));
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}
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SECTION("with no receiver there is no collection to follow") {
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REQUIRE(client.Get("/live/events", good)->status == 409);
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}
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SECTION("initialize drops the tokens and everything they protected") {
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REQUIRE(client.Post("/initialize")->status == 200);
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for (int i = 0; i < 120 && nlohmann::json::parse(client.Get("/status")->body).at("state") != "Idle"; i++)
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std::this_thread::sleep_for(std::chrono::milliseconds(500));
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auto res = client.Get("/statistics/data_collection");
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REQUIRE(res->status == 200);
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REQUIRE(res->body.find("protected_run") == std::string::npos);
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auto stats = client.Get("/statistics");
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REQUIRE(stats->status == 200);
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REQUIRE(stats->body.find("protected_run") == std::string::npos);
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REQUIRE(client.Get("/rugnux/status")->status == 200);
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REQUIRE(client.Get("/result/scan")->status != 401);
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}
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SECTION("the control plane and the broker status stay open") {
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REQUIRE(client.Get("/status")->status == 200);
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REQUIRE(client.Get("/image_buffer/status")->status == 200);
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REQUIRE(client.Get("/config/detector")->status == 200);
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}
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SECTION("a refused start keeps the current tokens, an accepted one replaces them") {
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// Not idle: /start is refused, the dataset stays protected by its own tokens.
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REQUIRE(client.Post("/deactivate")->status == 200);
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nlohmann::json body = {{"beam_x_pxl", 1000}, {"beam_y_pxl", 1000},
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{"detector_distance_mm", 100}, {"incident_energy_keV", 12.4}};
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REQUIRE(client.Post("/start", body.dump(), "application/json")->status == 500);
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REQUIRE(client.Get("/statistics/data_collection")->status == 401);
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REQUIRE(client.Get("/statistics/data_collection", good)->status == 200);
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// Back from Inactive; the next start without tokens leaves the dataset open.
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REQUIRE(client.Post("/initialize")->status == 200);
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start(nlohmann::json::object());
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REQUIRE(client.Get("/statistics/data_collection")->status == 200);
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REQUIRE(client.Get("/statistics/data_collection", wrong)->status == 200);
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// And with new tokens, the old ones no longer open it.
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start({{"tokens", {"secret-3"}}});
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const httplib::Headers newer{{"Authorization", "Bearer secret-3"}};
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REQUIRE(client.Get("/statistics/data_collection", good)->status == 401);
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REQUIRE(client.Get("/statistics/data_collection", newer)->status == 200);
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}
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}
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// A module placement that does not name exactly the detector's modules is the request's fault: /start
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// answers 400, whether a module is left out, placed twice or not the detector's at all.
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TEST_CASE("JFJochBrokerHttp_StartModulePlacementMismatch", "[broker]") {
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DiffractionExperiment experiment;
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SpotFindingSettings spot_finding;
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JFJochBrokerHttp broker(experiment, spot_finding);
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broker.AddDetectorSetup(DetJF4M());
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httplib::Server server;
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broker.attach(server);
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const int port = server.bind_to_any_port("127.0.0.1");
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REQUIRE(port > 0);
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struct ServerThread {
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httplib::Server &server;
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std::thread thread;
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explicit ServerThread(httplib::Server &s) : server(s), thread([&s] { s.listen_after_bind(); }) {}
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~ServerThread() { server.stop(); thread.join(); }
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} server_thread(server);
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server.wait_until_ready();
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httplib::Client client("127.0.0.1", port);
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REQUIRE(client.Post("/initialize")->status == 200);
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const auto assembled = ModulesAsImaged(DetJF4M().GetGeometry()).Get();
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REQUIRE(assembled.size() == 8);
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const auto entry = [](const DetectorModule &m) {
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const ModulePlacement p = PlacementOf(m);
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return nlohmann::json{{"x0", p.x0}, {"y0", p.y0},
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{"fast_axis", DirectionName(p.fast)}, {"slow_axis", DirectionName(p.slow)},
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{"x0_plane", p.x0_plane}, {"y0_plane", p.y0_plane},
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{"fast_step", {p.fast_step[0], p.fast_step[1]}},
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{"slow_step", {p.slow_step[0], p.slow_step[1]}}};
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};
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const auto start = [&](const nlohmann::json &placement) {
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nlohmann::json body = {{"beam_x_pxl", 1000}, {"beam_y_pxl", 1000},
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{"detector_distance_mm", 100}, {"incident_energy_keV", 12.4},
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{"images_per_trigger", 1}, {"ntrigger", 1},
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{"file_prefix", "placement_run"}, {"module_placement", placement}};
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auto res = client.Post("/start", body.dump(), "application/json");
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REQUIRE(res);
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return res->status;
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};
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nlohmann::json missing = nlohmann::json::array();
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for (size_t m = 1; m < assembled.size(); m++)
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missing.push_back(entry(assembled[m]));
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CHECK(start(missing) == 400);
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nlohmann::json twice = missing;
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twice.push_back(entry(assembled[1]));
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CHECK(start(twice) == 400);
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nlohmann::json elsewhere = entry(assembled[0]);
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elsewhere["y0"] = elsewhere["y0"].get<int64_t>() + 1;
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nlohmann::json unknown = missing;
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unknown.push_back(elsewhere);
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CHECK(start(unknown) == 400);
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// Nothing was started.
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CHECK(nlohmann::json::parse(client.Get("/status")->body).at("state") == "Idle");
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}
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// The online rotation-indexing settings and quick_integration are deprecated: a request may leave them
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// out or set them, and they come back at their old defaults either way.
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TEST_CASE("JFJochBrokerHttp_DeprecatedAnalysisSettings", "[broker]") {
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DiffractionExperiment experiment;
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SpotFindingSettings spot_finding;
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JFJochBrokerHttp broker(experiment, spot_finding);
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broker.AddDetectorSetup(DetJF4M());
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httplib::Server server;
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broker.attach(server);
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const int port = server.bind_to_any_port("127.0.0.1");
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REQUIRE(port > 0);
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struct ServerThread {
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httplib::Server &server;
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std::thread thread;
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explicit ServerThread(httplib::Server &s) : server(s), thread([&s] { s.listen_after_bind(); }) {}
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~ServerThread() { server.stop(); thread.join(); }
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} server_thread(server);
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server.wait_until_ready();
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httplib::Client client("127.0.0.1", port);
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REQUIRE(client.Post("/initialize")->status == 200);
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nlohmann::json indexing = nlohmann::json::parse(client.Get("/config/indexing")->body);
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indexing.erase("rotation_indexing");
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indexing.erase("rotation_indexing_min_angular_range_deg");
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indexing.erase("rotation_indexing_angular_stride_deg");
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CHECK(client.Put("/config/indexing", indexing.dump(), "application/json")->status == 200);
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indexing["rotation_indexing"] = true;
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indexing["rotation_indexing_min_angular_range_deg"] = 30.0;
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CHECK(client.Put("/config/indexing", indexing.dump(), "application/json")->status == 200);
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indexing = nlohmann::json::parse(client.Get("/config/indexing")->body);
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CHECK(indexing.at("rotation_indexing") == false);
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CHECK(indexing.at("rotation_indexing_min_angular_range_deg") == 20.0);
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CHECK(indexing.at("rotation_indexing_angular_stride_deg") == 0.5);
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nlohmann::json spot = nlohmann::json::parse(client.Get("/config/spot_finding")->body);
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spot.erase("quick_integration");
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CHECK(client.Put("/config/spot_finding", spot.dump(), "application/json")->status == 200);
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spot["quick_integration"] = true;
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CHECK(client.Put("/config/spot_finding", spot.dump(), "application/json")->status == 200);
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spot = nlohmann::json::parse(client.Get("/config/spot_finding")->body);
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CHECK(spot.at("quick_integration") == false);
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}
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