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Jungfraujoch/viewer/JFJochViewerWindow.cpp
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leonarski_fandClaude Opus 5 8db75bf8e7 grid scan: the viewer's Grid mode is settable, not only startable 
Grid was a mode with no settings. It could be selected and run, but the raster it scored
was whatever the file happened to record, what counted as a crystal was fixed at the
compile-time defaults, and the settings a Grid run actually uses - the cell, spot finding,
indexing - were built inside the MX page and therefore invisible in the mode that uses them.

The unit cell, goniometer, spot-finding and indexing sections now sit outside the page
stack and are shown for MX and Grid alike, the way the azimuthal section already was.
That is not four convenient extras: a raster is scored out of the spots, indexes every
cell by default, and is normally run against a known cell on a fixed target - and the
goniometer section is where the grid geometry itself is stated. Bragg integration, scaling
and the reference dataset stay on the MX page, because a raster integrates, scales and
merges nothing. None of them is duplicated; a second control for one setting is a pair of
controls that can disagree.

The Grid page carries the analysis: the two score thresholds, the minimum cells per
crystal, the decisive single-cell score, an optional cap and whether each cell is indexed.
Every default is read from GridScanAnalysisSettings rather than written out again, so this
panel and the web one cannot drift apart on what a default is; a test pins the numbers so
that moving one is a decision rather than a side effect. No cap is spelled as an unticked
box and not as a count that happens to mean "all". The settings ride to the run on the
experiment, which now survives the panel's round trip through the reader.

The grid geometry could already be edited but not trusted. A step of zero was quietly
replaced by a default, which is the worst answer available: the map is reshaped, every
crystal is reported somewhere else on the sample, and nothing looks wrong. It is now
refused - no grid is set, the summary says which field is at fault, and the run is refused
with it. The summary also says where the grid came from, the fields are highlighted when
they are not the file's, and images that do not fill the last row are called out. The
baseline for "not the file's" is taken when a file is opened, because datasetLoaded fires
again after every edit and by then the file's grid is indistinguishable from one typed
over it.

Two defects found while verifying this. A raster is stored with a stationary omega beside
its grid, since NXmx cannot say "no rotation" - and the panel read a goniometer of any kind
as outranking the grid, so the first grid-scan run to come back carrying that placeholder
axis flipped the panel to Rotation, and the next edit dropped the raster and got the
following run refused. A goniometer that does not scan no longer outranks a grid. And a
grid whose fields cannot make one is a half-finished edit, not a dataset that stopped being
a raster, so it no longer throws the mode away under the user mid-edit.

The Grid refusal now means what it says: no grid scan in the file AND none set in the
panel. A file that records no raster - an older one, a foreign one - can be given one and
analysed, which was the point.

Verified headlessly on a stored raster: the Grid page shows the file's 13 x 15 grid and the
analysis settings at their defaults, a run finds one crystal and draws it on the map, and
the same run with the protein score threshold at 0.95 finds none - so the settings reach
the analysis rather than merely being drawn. On a rotation dataset the mode is refused,
accepted once a grid is entered, and refused again with a zero step.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01EFEJG6WBQv8th4UJFNe53N
2026-09-08 14:46:33 +02:00

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// SPDX-FileCopyrightText: 2025 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
// SPDX-License-Identifier: GPL-3.0-only
#include "JFJochViewerWindow.h"
#include <QThread>
#include <QDockWidget>
#include <QKeyEvent>
#include <QGuiApplication>
#include <QScreen>
#include <QScrollArea>
#include <QSettings>
#include <QCloseEvent>
#include <QRandomGenerator>
#include <QLabel>
#include <QPainter>
#include <QPushButton>
#include "JFJochImageReadingWorker.h"
#include "image_viewer/JFJochDiffractionImage.h"
#include "JFJochViewerSidePanel.h"
#include "widgets/JFJochViewerSettingsDock.h"
#include "widgets/JFJochViewerImageStrip.h"
#include "JFJochViewerStatusBar.h"
#include "../common/CUDAWrapper.h"
#include "../rugnux/RugnuxDefaults.h"
#include "windows/JFJochViewerImageListWindow.h"
#include "windows/JFJochViewerMetadataWindow.h"
#ifdef JFJOCH_VIEWER_DBUS
#include "dbus/JFJochViewerAdaptor.h"
#endif
#include "windows/JFJochProcessingJobsWindow.h"
#include "windows/JFJochViewerSpotListWindow.h"
#include "windows/JFJochViewerReflectionListWindow.h"
#include "windows/JFJochCalibrationWindow.h"
#include "windows/JFJochViewerReciprocalSpaceWindow.h"
#include "toolbar/JFJochViewerToolbarDisplay.h"
#include "toolbar/JFJochViewerToolbarImage.h"
#include "windows/JFJoch2DAzintImageWindow.h"
#include "windows/JFJochMagnifierWindow.h"
#include "image_viewer/JFJochImage.h"
#include "image_viewer/JFJochSimpleImage.h"
#include <QMessageBox>
// Dock-layout version for saveState/restoreState: bump whenever the dock set / structure changes so a
// stale saved layout (which can restore a dock as a broken, non-responsive floating window) is rejected
// and the default layout applies instead.
static constexpr int kLayoutVersion = 2;
JFJochViewerWindow::JFJochViewerWindow(QWidget *parent, bool dbus, const QString &file) : QMainWindow(parent) {
menuBar = new JFJochViewerMenu(this);
setMenuBar(menuBar);
// PSI logo in the menu-bar corner. There are four interchangeable dot designs; pick one at
// random each launch, for fun.
{
const int n = QRandomGenerator::global()->bounded(1, 5); // 1..4
QPixmap logoPixmap(QStringLiteral(":/psi_%1.png").arg(n, 2, 10, QLatin1Char('0')));
auto *logo = new QLabel(this);
logo->setPixmap(logoPixmap.scaledToHeight(22, Qt::SmoothTransformation));
logo->setContentsMargins(6, 0, 8, 0);
menuBar->setCornerWidget(logo, Qt::TopRightCorner);
}
setFocusPolicy(Qt::StrongFocus);
auto toolBarImage = new JFJochViewerToolbarImage(this);
toolBarImage->setObjectName("toolBarImage"); // objectName required for saveState/restoreState
addToolBar(Qt::TopToolBarArea, toolBarImage);
addToolBarBreak(Qt::TopToolBarArea);
toolBarDisplay = new JFJochViewerToolbarDisplay(this);
toolBarDisplay->setObjectName("toolBarDisplay");
addToolBar(Qt::TopToolBarArea, toolBarDisplay);
statusbar = new JFJochViewerStatusBar(this);
setStatusBar(statusbar);
setDockOptions(dockOptions() & ~QMainWindow::DockOption::AllowTabbedDocks);
setWindowTitle("Jungfraujoch image viewer");
// Start large on a big display but fit within a laptop screen.
const QRect avail = QGuiApplication::primaryScreen()->availableGeometry();
resize(qMin(1200, avail.width() - 100), qMin(1100, avail.height() - 100));
SpotFindingSettings spot_finding_settings = DiffractionExperiment::DefaultDataProcessingSettings();
// The interactive viewer is an offline tool looking at one dataset at a time, so it starts from the
// self-calibrating settings rather than numbers the user would have to tune: the per-ring adaptive
// threshold, min-pix chosen per image (std::nullopt), and detection out to the detector edge
// (high_resolution_limit unset). All three are switchable in the settings dock.
spot_finding_settings.adaptive_threshold = true;
spot_finding_settings.min_pix_per_spot = std::nullopt;
spot_finding_settings.indexing = true;
IndexingSettings indexing_settings;
indexing_settings.IndexingThreads(1);
indexing_settings.Algorithm(IndexingAlgorithmEnum::Auto);
if (get_gpu_count() == 0) {
indexing_settings.Algorithm(IndexingAlgorithmEnum::FFTW);
indexing_settings.FFT_NumVectors(8 * 1024);
}
indexing_settings.GeomRefinementAlgorithm(GeomRefinementAlgorithmEnum::BeamCenter);
DiffractionExperiment experiment;
experiment.ImportIndexingSettings(indexing_settings);
experiment.DetectIceRings(true);
// Files carry no polarization factor, so without this the interactive analysis would integrate
// without the Lp correction that a processing run applies. Start from the same policy `rugnux`
// does; the settings panel shows it and can change it per dataset.
ApplyRugnuxExperimentDefaults(experiment);
// Central area: the diffraction image. Everything else (inspector, plots, processing) is a
// dock, so the layout can be rearranged, saved, and switched between perspectives.
auto viewer = new JFJochDiffractionImage(this);
viewer->setSizePolicy(QSizePolicy::Expanding, QSizePolicy::Expanding);
setCentralWidget(viewer);
auto side_panel = new JFJochViewerSidePanel(this);
auto side_panel_scroll = new QScrollArea(this);
side_panel_scroll->setWidget(side_panel);
side_panel_scroll->setWidgetResizable(true);
side_panel_scroll->setHorizontalScrollBarPolicy(Qt::ScrollBarAlwaysOff);
side_panel_scroll->setVerticalScrollBarPolicy(Qt::ScrollBarAsNeeded);
side_panel_scroll->setMinimumWidth(450);
side_panel_scroll->setMaximumWidth(600);
inspectorDock = new QDockWidget("Inspector", this);
inspectorDock->setObjectName("inspectorDock");
inspectorDock->setAllowedAreas(Qt::LeftDockWidgetArea | Qt::RightDockWidgetArea);
inspectorDock->setWidget(side_panel_scroll);
addDockWidget(Qt::RightDockWidgetArea, inspectorDock);
menuBar->AddDockEntry(inspectorDock, "Inspector");
reading_worker = new JFJochImageReadingWorker(spot_finding_settings, experiment);
reading_thread = new QThread(this);
reading_worker->moveToThread(reading_thread);
reading_thread->start();
auto tableWindow = new JFJochViewerImageListWindow(this);
auto metadataWindow = new JFJochViewerMetadataWindow(this);
auto spotWindow = new JFJochViewerSpotListWindow(this);
auto reflectionWindow = new JFJochViewerReflectionListWindow(this);
auto calibrationWindow = new JFJochCalibrationWindow(this);
auto reciprocalWindow = new JFJochViewerReciprocalSpaceWindow(this);
auto azintImageWindow = new JFJoch2DAzintImageWindow(this);
auto magnifierWindow = new JFJochMagnifierWindow(this);
processingJobsWindow = new JFJochProcessingJobsWindow(reading_worker, this);
// The two hero actions (re-analyse the current image / the whole dataset) live at the top of the
// settings panel now — see the JFJochViewerSettingsDock wiring below.
menuBar->AddWindowEntry(tableWindow, "Image list");
menuBar->AddWindowEntry(spotWindow, "Spot list");
menuBar->AddWindowEntry(reflectionWindow, "Reflection list");
menuBar->AddWindowEntry(metadataWindow, "Image metadata");
menuBar->AddWindowEntry(calibrationWindow, "Calibration image viewer");
menuBar->AddWindowEntry(reciprocalWindow, "Reciprocal space viewer");
menuBar->AddWindowEntry(azintImageWindow, "Azimuthal integration 2D image");
menuBar->AddWindowEntry(magnifierWindow, "Magnifier");
// processingJobsWindow is docked (bottom, next to the plots), not a standalone window - see below.
#ifdef JFJOCH_VIEWER_DBUS
if (dbus) {
// Create adaptor attached to this window
new JFJochViewerAdaptor(this);
QDBusConnection connection = QDBusConnection::sessionBus();
if (!connection.registerService("ch.psi.jfjoch_viewer")) {
qWarning("Failed to register D-Bus service: %s", qPrintable(connection.lastError().message()));
} else {
if (!connection.registerObject("/", this, QDBusConnection::ExportAdaptors)) {
qFatal("Failed to register D-Bus object: %s", qPrintable(connection.lastError().message()));
}
}
}
#else
(void) dbus;
#endif
connect(this, &JFJochViewerWindow::LoadFileRequest,
reading_worker, &JFJochImageReadingWorker::LoadFile);
connect(this, &JFJochViewerWindow::LoadImageRequest,
reading_worker, &JFJochImageReadingWorker::LoadImage);
connect(menuBar, &JFJochViewerMenu::fileOpenSelected,
reading_worker, &JFJochImageReadingWorker::LoadFile);
connect(menuBar, &JFJochViewerMenu::fileCloseSelected,
reading_worker, &JFJochImageReadingWorker::CloseFile);
// The worker runs in its own thread; its imageLoaded crosses the thread boundary exactly once,
// into OnImageReady, which re-emits imageReady to every GUI consumer synchronously (same thread)
// and then acks the worker (imageConsumed). Routing all consumers through one window signal makes
// the ack land after they have all run, and lets the worker cap how many frames are in flight.
connect(reading_worker, &JFJochImageReadingWorker::imageLoaded,
this, &JFJochViewerWindow::OnImageReady);
connect(this, &JFJochViewerWindow::imageConsumed,
reading_worker, &JFJochImageReadingWorker::ImageConsumed);
// Dataset stream routed the same way, so it gets the same backpressure: the worker's datasetLoaded
// crosses the thread boundary once into OnDatasetReady, which re-emits datasetReady to every GUI
// consumer synchronously and then acks the worker (datasetConsumed).
connect(reading_worker, &JFJochImageReadingWorker::datasetLoaded,
this, &JFJochViewerWindow::OnDatasetReady);
connect(this, &JFJochViewerWindow::datasetConsumed,
reading_worker, &JFJochImageReadingWorker::DatasetConsumed);
connect(this, &JFJochViewerWindow::imageReady,
viewer, &JFJochDiffractionImage::loadImage);
connect(this, &JFJochViewerWindow::imageReady,
side_panel, &JFJochViewerSidePanel::loadImage);
connect(reading_worker, &JFJochImageReadingWorker::imageStatsUpdated,
side_panel, &JFJochViewerSidePanel::loadImage);
connect(reading_worker, &JFJochImageReadingWorker::imageNumberChanged, toolBarImage,
&JFJochViewerToolbarImage::setImageNumber);
connect(toolBarImage, &JFJochViewerToolbarImage::loadImage, reading_worker, &JFJochImageReadingWorker::LoadImage);
connect(viewer, &JFJochDiffractionImage::stepImage, toolBarImage, &JFJochViewerToolbarImage::stepImage);
connect(toolBarDisplay, &JFJochViewerToolbarDisplay::setForeground, viewer,
&JFJochDiffractionImage::changeForeground);
connect(viewer, &JFJochDiffractionImage::autoForegroundChanged,
toolBarDisplay, &JFJochViewerToolbarDisplay::updateAutoForeground);
connect(toolBarDisplay, &JFJochViewerToolbarDisplay::setAutoForeground, viewer,
&JFJochDiffractionImage::setAutoForeground);
connect(toolBarDisplay, &JFJochViewerToolbarDisplay::setHDRMode, viewer,
&JFJochDiffractionImage::setHDRMode);
connect(toolBarDisplay, &JFJochViewerToolbarDisplay::colorMapChanged, viewer,
&JFJochDiffractionImage::setColorMap);
connect(toolBarDisplay, &JFJochViewerToolbarDisplay::colorMapChanged, azintImageWindow,
&JFJoch2DAzintImageWindow::setColorMap);
connect(this, &JFJochViewerWindow::imageReady,
azintImageWindow, &JFJoch2DAzintImageWindow::imageLoaded);
connect(viewer, &JFJochDiffractionImage::foregroundChanged,
toolBarDisplay, &JFJochViewerToolbarDisplay::updateForeground);
connect(side_panel, &JFJochViewerSidePanel::roisChanged,
reading_worker, &JFJochImageReadingWorker::SetROIDefinition);
connect(side_panel, &JFJochViewerSidePanel::selectedROIChanged,
viewer, &JFJochDiffractionImage::setSelectedROI);
connect(viewer, &JFJochDiffractionImage::roiGeometryEdited,
reading_worker, &JFJochImageReadingWorker::SetROIDefinition);
connect(viewer, &JFJochDiffractionImage::roiSelected,
side_panel, &JFJochViewerSidePanel::selectROIInList);
connect(side_panel, &JFJochViewerSidePanel::downloadROIs,
reading_worker, &JFJochImageReadingWorker::DownloadROIsFromServer);
connect(side_panel, &JFJochViewerSidePanel::uploadROIs,
reading_worker, &JFJochImageReadingWorker::UploadROIsToServer);
connect(side_panel, &JFJochViewerSidePanel::maskFromROI,
reading_worker, &JFJochImageReadingWorker::MaskFromSelectedROI);
connect(menuBar, &JFJochViewerMenu::clearUserMaskSelected,
reading_worker, &JFJochImageReadingWorker::ClearUserMask);
connect(menuBar, &JFJochViewerMenu::saveUserMaskTiffSelected,
reading_worker, &JFJochImageReadingWorker::SaveUserMaskTIFF);
connect(menuBar, &JFJochViewerMenu::loadUserMaskTiffSelected,
reading_worker, &JFJochImageReadingWorker::LoadUserMaskTIFF);
connect(menuBar, &JFJochViewerMenu::uploadUserMaskSelected,
reading_worker, &JFJochImageReadingWorker::UploadUserMask);
connect(this, &JFJochViewerWindow::datasetReady,
tableWindow, &JFJochViewerImageListWindow::datasetLoaded);
connect(this, &JFJochViewerWindow::datasetReady,
spotWindow, &JFJochViewerSpotListWindow::datasetLoaded);
connect(this, &JFJochViewerWindow::datasetReady,
metadataWindow, &JFJochViewerMetadataWindow::datasetLoaded);
connect(this, &JFJochViewerWindow::imageReady,
tableWindow, &JFJochViewerImageListWindow::imageLoaded);
connect(this, &JFJochViewerWindow::imageReady,
spotWindow, &JFJochViewerSpotListWindow::imageLoaded);
connect(tableWindow, &JFJochViewerImageListWindow::imageSelected,
reading_worker, &JFJochImageReadingWorker::LoadImage);
connect(reading_worker, &JFJochImageReadingWorker::autoloadChanged,
toolBarImage, &JFJochViewerToolbarImage::setAutoloadMode);
connect(toolBarImage, &JFJochViewerToolbarImage::autoLoadButtonPressed,
reading_worker, &JFJochImageReadingWorker::setAutoLoadMode);
connect(toolBarImage, &JFJochViewerToolbarImage::imageJumpChanged,
reading_worker, &JFJochImageReadingWorker::setAutoLoadJump);
// HTTP-sync button: reflect the live connection, and open the connect dialog when clicked
// while no live source is attached (i.e. a plain file is open).
connect(reading_worker, &JFJochImageReadingWorker::httpConnectionChanged,
toolBarImage, &JFJochViewerToolbarImage::setHttpConnection);
connect(toolBarImage, &JFJochViewerToolbarImage::requestHttpConnect,
menuBar, &JFJochViewerMenu::openHttpSelected);
connect(toolBarImage, &JFJochViewerToolbarImage::requestOpenFile,
menuBar, &JFJochViewerMenu::openSelected);
connect(side_panel, &JFJochViewerSidePanel::analyze,
reading_worker, &JFJochImageReadingWorker::Analyze);
connect(side_panel, &JFJochViewerSidePanel::findBeamCenter,
reading_worker, &JFJochImageReadingWorker::FindCenter);
connect(this, &JFJochViewerWindow::datasetReady,
reflectionWindow, &JFJochViewerReflectionListWindow::datasetLoaded);
connect(this, &JFJochViewerWindow::imageReady,
reflectionWindow, &JFJochViewerReflectionListWindow::imageLoaded);
connect(reflectionWindow, &JFJochHelperWindow::zoom, viewer, &JFJochDiffractionImage::centerOnSpot);
connect(spotWindow, &JFJochHelperWindow::zoom, viewer, &JFJochDiffractionImage::centerOnSpot);
connect(side_panel, &JFJochViewerSidePanel::showSpots,
viewer, &JFJochDiffractionImage::showSpots);
connect(side_panel, &JFJochViewerSidePanel::showPredictions,
viewer, &JFJochDiffractionImage::showPredictions);
connect(side_panel, &JFJochViewerSidePanel::showROILabels,
viewer, &JFJochDiffractionImage::showROILabels);
connect(side_panel, &JFJochViewerSidePanel::showROIFill,
viewer, &JFJochDiffractionImage::showROIFill);
connect(side_panel, &JFJochViewerSidePanel::setFeatureColor,
viewer, &JFJochDiffractionImage::setFeatureColor);
connect(side_panel, &JFJochViewerSidePanel::setFeatureColor,
calibrationWindow, &JFJochCalibrationWindow::setFeatureColor);
connect(side_panel, &JFJochViewerSidePanel::setSpotColor,
viewer, &JFJochDiffractionImage::setSpotColor);
connect(side_panel, &JFJochViewerSidePanel::showHighestPixels,
viewer, &JFJochDiffractionImage::showHighestPixels);
connect(side_panel, &JFJochViewerSidePanel::showSaturatedPixels,
viewer, &JFJochDiffractionImage::showSaturation);
connect(side_panel, &JFJochViewerSidePanel::showBeamStop,
viewer, &JFJochDiffractionImage::showBeamStop);
connect(viewer, &JFJochDiffractionImage::writeStatusBar,
statusbar, &JFJochViewerStatusBar::display);
connect(side_panel, &JFJochViewerSidePanel::writeStatusBar,
statusbar, &JFJochViewerStatusBar::display);
// Detector connection / broker state / live readouts in the status bar
connect(reading_worker, &JFJochImageReadingWorker::brokerStatusUpdated,
statusbar, &JFJochViewerStatusBar::setBrokerStatus);
connect(reading_worker, &JFJochImageReadingWorker::httpConnectionChanged,
statusbar, &JFJochViewerStatusBar::setHttpConnection);
connect(reading_worker, &JFJochImageReadingWorker::autoloadChanged,
statusbar, &JFJochViewerStatusBar::setAutoloadMode);
connect(reading_worker, &JFJochImageReadingWorker::imageNumberChanged,
statusbar, &JFJochViewerStatusBar::setImageNumber);
connect(reading_worker, &JFJochImageReadingWorker::liveRateChanged,
statusbar, &JFJochViewerStatusBar::setLiveRate);
connect(metadataWindow, &JFJochViewerMetadataWindow::datasetUpdated,
reading_worker, &JFJochImageReadingWorker::UpdateDataset);
connect(reading_worker, &JFJochImageReadingWorker::setRings,
side_panel, &JFJochViewerSidePanel::SetRings);
connect(side_panel, &JFJochViewerSidePanel::resRingsSet,
viewer, &JFJochDiffractionImage::setResolutionRing);
connect(side_panel, &JFJochViewerSidePanel::ringModeSet,
viewer, &JFJochDiffractionImage::setResolutionRingMode);
connect(side_panel, &JFJochViewerSidePanel::highlightIceRings,
viewer, &JFJochDiffractionImage::highlightIceRings);
connect(calibrationWindow, &JFJochCalibrationWindow::loadCalibration,
reading_worker, &JFJochImageReadingWorker::LoadCalibration);
connect(this, &JFJochViewerWindow::datasetReady,
calibrationWindow, &JFJochCalibrationWindow::datasetLoaded);
connect(reading_worker, &JFJochImageReadingWorker::simpleImageLoaded,
calibrationWindow, &JFJochCalibrationWindow::calibrationLoaded);
connect(this, &JFJochViewerWindow::datasetReady,
reciprocalWindow, &JFJochViewerReciprocalSpaceWindow::datasetLoaded);
connect(this, &JFJochViewerWindow::imageReady,
reciprocalWindow, &JFJochViewerReciprocalSpaceWindow::imageLoaded);
connect(reciprocalWindow, &JFJochViewerReciprocalSpaceWindow::loadSpotsRequest,
reading_worker, &JFJochImageReadingWorker::LoadSpots);
connect(reading_worker, &JFJochImageReadingWorker::spotsLoaded,
reciprocalWindow, &JFJochViewerReciprocalSpaceWindow::spotsLoaded);
connect(reciprocalWindow, &JFJochHelperWindow::zoom,
viewer, &JFJochDiffractionImage::centerOnSpot);
connect(side_panel, &JFJochViewerSidePanel::setSpotColor,
reciprocalWindow, &JFJochViewerReciprocalSpaceWindow::setSpotColor);
connect(side_panel, &JFJochViewerSidePanel::setFeatureColor,
reciprocalWindow, &JFJochViewerReciprocalSpaceWindow::setFeatureColor);
connect(azintImageWindow, &JFJoch2DAzintImageWindow::zoomOnBin,
viewer, &JFJochDiffractionImage::centerOnSpot);
// --- Magnifier ---
// The magnifier shows the frame the main view has already rendered - the same pixels with
// its own zoom and centre - so it neither converts nor colours anything itself.
connect(viewer, &JFJochImage::frameRendered, magnifierWindow, [viewer, magnifierWindow] {
magnifierWindow->setFrame(viewer->Frame());
});
// ... and the raw counts behind it, for the per-pixel labels. Stores a pointer, nothing more.
connect(this, &JFJochViewerWindow::imageReady,
magnifierWindow, &JFJochHelperWindow::imageLoaded);
connect(viewer, &JFJochImage::hoverScenePos,
magnifierWindow, &JFJochMagnifierWindow::centerAt);
// Ensure worker is deleted in its own thread when the thread stops
connect(reading_thread, &QThread::finished, reading_worker, &QObject::deleteLater);
// lastDataset and lastImage are captured in OnDatasetReady / OnImageReady, which see every
// dataset / frame before fanning them out.
connect(this, &JFJochViewerWindow::imageReady,
toolBarDisplay, &JFJochViewerToolbarDisplay::imageLoaded);
connect(reading_worker, &JFJochImageReadingWorker::fileLoadError,
this, &JFJochViewerWindow::OnFileLoadError);
connect(reading_worker, &JFJochImageReadingWorker::fileLoadRetryStatus,
this, &JFJochViewerWindow::OnFileLoadRetryStatus);
connect(menuBar, &JFJochViewerMenu::openDatasetInfo, this, &JFJochViewerWindow::NewDatasetInfo);
NewDatasetInfo();
connect(this, &JFJochViewerWindow::adjustForegroundButton,
viewer, &JFJochDiffractionImage::adjustForeground);
connect(this, &JFJochViewerWindow::setAutoForeground,
viewer, &JFJochDiffractionImage::setAutoForeground);
// Processing jobs: run rugnux locally / copy a cluster command line, and surface
// finished runs as switchable dataset snapshots.
connect(processingJobsWindow, &JFJochProcessingJobsWindow::registerSnapshot,
reading_worker, &JFJochImageReadingWorker::RegisterProcessingSnapshot);
connect(processingJobsWindow, &JFJochProcessingJobsWindow::activateSnapshot,
reading_worker, &JFJochImageReadingWorker::SetActiveSnapshot);
connect(processingJobsWindow, &JFJochProcessingJobsWindow::writeStatusBar,
statusbar, &JFJochViewerStatusBar::display);
connect(processingJobsWindow, &JFJochProcessingJobsWindow::renameRun,
reading_worker, &JFJochImageReadingWorker::RenameRun);
connect(processingJobsWindow, &JFJochProcessingJobsWindow::removeRun,
reading_worker, &JFJochImageReadingWorker::RemoveRun);
connect(reading_worker, &JFJochImageReadingWorker::httpConnectionChanged,
processingJobsWindow, &JFJochProcessingJobsWindow::onHttpConnectionChanged);
connect(reading_worker, &JFJochImageReadingWorker::fileOpened,
processingJobsWindow, &JFJochProcessingJobsWindow::clearJobs);
connect(reading_worker, &JFJochImageReadingWorker::snapshotsChanged, processingJobsWindow,
[pw = processingJobsWindow](QStringList, QString active) { pw->setActiveRun(active); });
connect(reading_worker, &JFJochImageReadingWorker::runsChanged, this,
[this](QVector<RunData> runs, QString active) {
lastRuns = std::move(runs);
lastActiveRunId = std::move(active);
});
// Inline settings dock: the surgical MX/AzInt subset, always visible (left), wired straight
// into the running analysis so edits re-run on the current image / dataset.
auto *settingsPanel = new JFJochViewerSettingsDock(spot_finding_settings, indexing_settings,
experiment.GetAzimuthalIntegrationSettings(),
experiment.GetBraggIntegrationSettings(),
experiment.GetScalingSettings(), this);
// The panel's natural minimum (a long reference-consistency warning, the geometry rows, …) would
// otherwise pin the dock wide and stop it folding back; setMinimumWidth(0) lets the scroll area's
// own minimum (330) govern the fold. The horizontal scrollbar is AlwaysOff (like the inspector
// dock): with widgetResizable, both-axes ScrollBarAsNeeded oscillates (a vertical bar narrows the
// viewport -> a horizontal bar appears -> shortens it -> vertical fits -> ...), which pegs the CPU
// and freezes the panel when floated.
settingsPanel->setMinimumWidth(0);
auto *settingsScroll = new QScrollArea(this);
settingsScroll->setWidget(settingsPanel);
settingsScroll->setWidgetResizable(true);
settingsScroll->setHorizontalScrollBarPolicy(Qt::ScrollBarAlwaysOff);
settingsScroll->setVerticalScrollBarPolicy(Qt::ScrollBarAsNeeded);
settingsScroll->setMinimumWidth(330);
settingsScroll->setMaximumWidth(480);
settingsDock = new QDockWidget("Settings", this);
settingsDock->setObjectName("settingsDock");
settingsDock->setAllowedAreas(Qt::LeftDockWidgetArea | Qt::RightDockWidgetArea);
settingsDock->setWidget(settingsScroll); // scrollable: don't force the window taller than the screen
addDockWidget(Qt::LeftDockWidgetArea, settingsDock);
menuBar->AddDockEntry(settingsDock, "Settings");
connect(settingsPanel, &JFJochViewerSettingsDock::spotFindingChanged,
reading_worker, &JFJochImageReadingWorker::UpdateSpotFindingSettings);
connect(settingsPanel, &JFJochViewerSettingsDock::azintChanged,
reading_worker, &JFJochImageReadingWorker::UpdateAzintSettings);
connect(settingsPanel, &JFJochViewerSettingsDock::braggChanged,
reading_worker, &JFJochImageReadingWorker::UpdateBraggIntegrationSettings);
connect(settingsPanel, &JFJochViewerSettingsDock::scalingChanged,
reading_worker, &JFJochImageReadingWorker::UpdateScalingSettings);
// The two analysis actions now live on top of the panel.
connect(settingsPanel, &JFJochViewerSettingsDock::reanalyzeImage,
reading_worker, &JFJochImageReadingWorker::ReanalyzeImages);
connect(settingsPanel, &JFJochViewerSettingsDock::analyzeDataset,
processingJobsWindow, &JFJochProcessingJobsWindow::newJob);
// Grey out "Analyze dataset" on a live HTTP source (re-processing needs a stored file).
connect(reading_worker, &JFJochImageReadingWorker::httpConnectionChanged,
settingsPanel, &JFJochViewerSettingsDock::setHttpConnection);
connect(settingsPanel, &JFJochViewerSettingsDock::experimentChanged,
reading_worker, &JFJochImageReadingWorker::UpdateDataset);
connect(settingsPanel, &JFJochViewerSettingsDock::findBeamCenter,
reading_worker, &JFJochImageReadingWorker::FindCenter);
connect(this, &JFJochViewerWindow::datasetReady,
settingsPanel, &JFJochViewerSettingsDock::datasetLoaded);
// datasetReady also fires after every settings edit, so the panel needs this to tell a freshly
// opened file's grid scan from one entered over it.
connect(reading_worker, &JFJochImageReadingWorker::fileOpened,
settingsPanel, &JFJochViewerSettingsDock::fileOpened);
connect(this, &JFJochViewerWindow::imageReady,
settingsPanel, &JFJochViewerSettingsDock::loadImage);
connect(settingsPanel, &JFJochViewerSettingsDock::ringsFromCalibration,
side_panel, &JFJochViewerSidePanel::SetRings);
connect(settingsPanel, &JFJochViewerSettingsDock::referenceSelected,
reading_worker, &JFJochImageReadingWorker::SetReferenceMtz);
connect(reading_worker, &JFJochImageReadingWorker::referenceMtzChanged,
settingsPanel, &JFJochViewerSettingsDock::referenceLoaded);
// Processing panel: hidden by default and narrower; it reveals itself (to the right of the
// plots) only when a reprocessing job starts.
processingDock = new QDockWidget("Processing", this);
processingDock->setObjectName("processingDock");
// Allow any area so dragging it out (floating) and re-docking behave; the table's natural width
// (its columns) must not pin the dock wide, so let it fold like the settings dock.
processingDock->setAllowedAreas(Qt::AllDockWidgetAreas);
processingDock->setFeatures(
QDockWidget::DockWidgetMovable | QDockWidget::DockWidgetFloatable | QDockWidget::DockWidgetClosable);
processingJobsWindow->setMinimumWidth(0);
processingDock->setWidget(processingJobsWindow);
addDockWidget(Qt::BottomDockWidgetArea, processingDock);
if (lastDatasetInfoDock) {
splitDockWidget(lastDatasetInfoDock, processingDock, Qt::Horizontal);
resizeDocks({lastDatasetInfoDock, processingDock}, {900, 280}, Qt::Horizontal);
}
processingDock->hide();
menuBar->AddDockEntry(processingDock, "Processing");
connect(processingJobsWindow, &JFJochProcessingJobsWindow::jobStarted, this, [this] {
processingDock->show();
processingDock->raise();
});
// Image strip / hit feed: thumbnails of representative images, rendered off-thread; click opens.
// Stacked below the plots — both want vertical room, and the strip needs less of it.
auto *imageStrip = new JFJochViewerImageStrip(this);
imageStripDock = new QDockWidget("Image strip", this);
imageStripDock->setObjectName("imageStripDock");
imageStripDock->setWidget(imageStrip);
addDockWidget(Qt::BottomDockWidgetArea, imageStripDock);
if (lastDatasetInfoDock) {
splitDockWidget(lastDatasetInfoDock, imageStripDock, Qt::Vertical);
resizeDocks({lastDatasetInfoDock, imageStripDock}, {260, 140}, Qt::Vertical);
}
menuBar->AddDockEntry(imageStripDock, "Image strip");
connect(this, &JFJochViewerWindow::datasetReady,
imageStrip, &JFJochViewerImageStrip::datasetLoaded);
connect(reading_worker, &JFJochImageReadingWorker::fileOpened,
imageStrip, &JFJochViewerImageStrip::resetForNewFile);
connect(imageStrip, &JFJochViewerImageStrip::requestThumbnails,
reading_worker, &JFJochImageReadingWorker::RenderThumbnails);
connect(reading_worker, &JFJochImageReadingWorker::thumbnailReady,
imageStrip, &JFJochViewerImageStrip::thumbnailReady);
connect(imageStrip, &JFJochViewerImageStrip::imageSelected,
reading_worker, &JFJochImageReadingWorker::LoadImage);
connect(toolBarDisplay, &JFJochViewerToolbarDisplay::colorMapChanged,
reading_worker, &JFJochImageReadingWorker::SetThumbnailColorMap);
connect(side_panel, &JFJochViewerSidePanel::setFeatureColor,
reading_worker, &JFJochImageReadingWorker::SetThumbnailFeatureColor);
connect(side_panel, &JFJochViewerSidePanel::setSpotColor,
reading_worker, &JFJochImageReadingWorker::SetThumbnailSpotColor);
connect(menuBar, &JFJochViewerMenu::imageLayoutSelected, this,
[this] { ApplyPerspective(Perspective::Image); });
connect(menuBar, &JFJochViewerMenu::processingLayoutSelected, this,
[this] { ApplyPerspective(Perspective::Processing); });
connect(menuBar, &JFJochViewerMenu::resetLayoutSelected, this,
[this] { if (!defaultLayoutState.isEmpty()) restoreState(defaultLayoutState, kLayoutVersion); });
// Tear-off floating is disabled for all docks: a floated QDockWidget is unreliable across platforms
// (on WSLg it becomes an off-screen, override-redirect window that can't be focused or recovered, so
// the undocked panel goes dead). Docks stay movable between dock areas and closable, just not floated.
for (QDockWidget *dock : findChildren<QDockWidget *>())
dock->setFeatures(dock->features() & ~QDockWidget::DockWidgetFloatable);
// Remember the freshly-built layout so "Reset layout" can return to it, then restore the
// user's last-used arrangement if they have one (and if it matches the current layout version).
defaultLayoutState = saveState(kLayoutVersion);
QSettings settings("PSI", "jfjoch_viewer");
restoreGeometry(settings.value("geometry").toByteArray());
restoreState(settings.value("windowState").toByteArray(), kLayoutVersion);
if (!file.isEmpty())
LoadFile(file, 0, 1, false);
}
JFJochViewerWindow::~JFJochViewerWindow() {
if (reading_thread && reading_thread->isRunning()) {
reading_thread->quit();
reading_thread->wait();
}
}
void JFJochViewerWindow::ApplyPerspective(Perspective p) {
// Image: just the image + inspector. Processing: also settings, dataset-info plots, jobs panel.
const bool processing = (p == Perspective::Processing);
if (inspectorDock) inspectorDock->setVisible(true);
if (settingsDock) settingsDock->setVisible(processing);
if (imageStripDock) imageStripDock->setVisible(processing);
if (processingDock && !processing) processingDock->hide(); // shows only when a job starts
for (auto *d : findChildren<QDockWidget *>())
if (d->objectName().startsWith("datasetInfoDock"))
d->setVisible(processing);
}
void JFJochViewerWindow::closeEvent(QCloseEvent *event) {
// Persist the dock/toolbar arrangement and window geometry so the next launch resumes it.
QSettings settings("PSI", "jfjoch_viewer");
settings.setValue("geometry", saveGeometry());
settings.setValue("windowState", saveState(kLayoutVersion));
QMainWindow::closeEvent(event);
}
void JFJochViewerWindow::LoadFile(const QString &filename, qint64 image_number, qint64 summation, bool retry) {
emit LoadFileRequest(filename, image_number, summation, true);
}
void JFJochViewerWindow::LoadImage(qint64 image_number, qint64 summation) {
emit LoadImageRequest(image_number, summation);
}
void JFJochViewerWindow::OnImageReady(std::shared_ptr<const JFJochReaderImage> image) {
lastImage = image; // newest frame, for dataset-info docks opened later
emit imageReady(image); // fan out to every GUI consumer synchronously (same thread)
emit imageConsumed(); // ack the worker so it may fetch/produce the next frame
}
void JFJochViewerWindow::OnDatasetReady(std::shared_ptr<const JFJochReaderDataset> dataset) {
lastDataset = dataset; // newest dataset, for dataset-info docks opened later
emit datasetReady(dataset); // fan out to every GUI consumer synchronously (same thread)
emit datasetConsumed(); // ack the worker so it may produce the next dataset refresh
}
void JFJochViewerWindow::NewDatasetInfo() {
auto info = new JFJochViewerDatasetInfo(this);
info->datasetLoaded(lastDataset);
info->imageLoaded(lastImage);
info->runsChanged(lastRuns, lastActiveRunId);
auto dock = new QDockWidget(QString("Dataset info"), this);
dock->setObjectName(QStringLiteral("datasetInfoDock%1").arg(datasetInfoCounter++));
dock->setAllowedAreas(Qt::BottomDockWidgetArea);
dock->setFeatures(
QDockWidget::DockWidgetMovable | QDockWidget::DockWidgetFloatable | QDockWidget::DockWidgetClosable |
QDockWidget::DockWidgetVerticalTitleBar);
dock->setAttribute(Qt::WA_DeleteOnClose);
dock->setWidget(info);
addDockWidget(Qt::BottomDockWidgetArea, dock);
// Place additional plots beside the previous one so "+ Plot" gives a visible row of plots.
if (lastDatasetInfoDock)
splitDockWidget(lastDatasetInfoDock, dock, Qt::Horizontal);
lastDatasetInfoDock = dock;
// Wire signals like the initial dataset_info
connect(this, &JFJochViewerWindow::datasetReady,
info, &JFJochViewerDatasetInfo::datasetLoaded);
connect(this, &JFJochViewerWindow::imageReady,
info, &JFJochViewerDatasetInfo::imageLoaded);
// All runs (original + reprocessing snapshots) overlay as separate lines.
connect(reading_worker, &JFJochImageReadingWorker::runsChanged,
info, &JFJochViewerDatasetInfo::runsChanged);
// Live processing results: the in-progress run as its own overlay line.
connect(processingJobsWindow, &JFJochProcessingJobsWindow::liveDataset,
info, &JFJochViewerDatasetInfo::liveRunUpdated);
connect(info, &JFJochViewerDatasetInfo::imageSelected,
reading_worker, &JFJochImageReadingWorker::LoadImage);
connect(info, &JFJochViewerDatasetInfo::addPlot, this, &JFJochViewerWindow::NewDatasetInfo);
connect(toolBarDisplay, &JFJochViewerToolbarDisplay::colorMapChanged,
info, &JFJochViewerDatasetInfo::setColorMap);
connect(info, &JFJochViewerDatasetInfo::writeStatusBar,
statusbar, &JFJochViewerStatusBar::display);
}
void JFJochViewerWindow::keyPressEvent(QKeyEvent *event) {
if (event->key() == Qt::Key_F) {
emit adjustForegroundButton(true);
event->accept();
return;
}
if (event->key() == Qt::Key_A && ! event->isAutoRepeat()) {
emit setAutoForeground(true);
event->accept();
return;
}
QMainWindow::keyPressEvent(event);
}
void JFJochViewerWindow::keyReleaseEvent(QKeyEvent *event) {
if (event->key() == Qt::Key_F) {
emit adjustForegroundButton(false);
event->accept();
return;
}
QMainWindow::keyReleaseEvent(event);
}
void JFJochViewerWindow::OnFileLoadError(QString title, QString message) {
QMessageBox::critical(this, title, message);
}
void JFJochViewerWindow::OnFileLoadRetryStatus(bool active, QString message) {
if (active) {
if (!retryDialog) {
retryDialog = new QProgressDialog(this);
retryDialog->setWindowModality(Qt::WindowModal);
retryDialog->setRange(0, 0); // Infinite/Busy indicator
retryDialog->setCancelButton(nullptr); // Disable cancel for now
retryDialog->setMinimumDuration(0); // Show immediately
retryDialog->setWindowTitle("Loading File");
}
retryDialog->setLabelText(message);
retryDialog->show();
} else {
if (retryDialog) {
retryDialog->close();
retryDialog->deleteLater();
retryDialog = nullptr;
}
}
}
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