leonarski_f
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* Rugnux: Processes serial crystallography data from XFELs - SACLA (MPCCD), PAL-XFEL and European XFEL (CXI), LCLS (XTC) and SwissFEL Alvra (JUNGFRAU with a CrystFEL module geometry) - with several files or Jungfraujoch master files merged in one run (`rugnux *_master.h5`). * Rugnux: Stills processing takes a known unit cell and space group as a starting point, finds the beam centre (and, with a cell, the detector distance) from the images, detects the saturation level in other facilities' files and refines the placement of individual detector panels. * Rugnux: The stills report gives R_split and CC1/2 from frame half-sets, comparable with CrystFEL. * jfjoch_viewer: Opens the same XFEL file formats. * Validation: A stills battery checks Rugnux against deposited structures from SACLA, PAL-XFEL, LCLS, European XFEL and SwissFEL. * Rugnux: More reliable convergence of rotation scaling, and live molecular replacement starts as soon as the model is uploaded. * jfjoch_broker: Initialize clears the previous dataset's bearer tokens, image buffer and live Rugnux status, and a slow CUDA JIT cache is reported at start. Reviewed-on: #88 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
15 lines
787 B
C
15 lines
787 B
C
// SPDX-FileCopyrightText: 2026 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#pragma once
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#include "../common/DetectorModules.h"
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#include "../common/DetectorOrientation.h"
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#include "../writer/HDF5Objects.h"
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// The modules an NXmx file states, as WriteNXmxModules (writer/NXmxModules.h) writes them: groups
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// /entry/instrument/detector/module_0, module_1, ... Their offsets are taken relative to the image's pixel
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// (0, 0) and in the detector plane; a module standing out of that plane (an offset or pixel direction
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// with a component along the detector normal) is refused. Fewer than two such groups: none.
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DetectorModules ReadNXmxModules(HDF5Object &file, double pixel_size_m, const DetectorOrientation &orientation);
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