Filip Leonarski
06949caf1a
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This is an UNSTABLE release and not recommended for production use (please use rc.11 instead). * jfjoch_broker: Experimental rotation (3D) indexing * jfjoch_broker: Minor fix to error in optimizer potentially returning NaN values Reviewed-on: #18 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>
59 lines
1.9 KiB
C++
59 lines
1.9 KiB
C++
// SPDX-FileCopyrightText: 2024 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#ifndef JFJOCH_IMAGEANALYSISCPU_H
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#define JFJOCH_IMAGEANALYSISCPU_H
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#include <mutex>
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#include "../common/JFJochMessages.h"
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#include "../common/DiffractionExperiment.h"
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#include "../common/AzimuthalIntegration.h"
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#include "../common/PixelMask.h"
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#include "../common/AzimuthalIntegrationProfile.h"
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#include "bragg_integration/BraggPrediction.h"
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#include "spot_finding/ImageSpotFinder.h"
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#include "indexing/IndexerThreadPool.h"
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#include "IndexAndRefine.h"
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class MXAnalysisWithoutFPGA {
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std::mutex m;
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const DiffractionExperiment &experiment;
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const AzimuthalIntegration &integration;
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std::vector<uint16_t> roi_map;
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std::map<std::string, uint16_t> roi_names;
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size_t roi_count;
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size_t npixels;
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size_t xpixels;
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std::vector<bool> mask_1bit;
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std::unique_ptr<ImageSpotFinder> spotFinder;
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IndexAndRefine &indexer;
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std::unique_ptr<BraggPrediction> prediction;
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std::vector<int32_t> &updated_image;
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uint16_t azint_bins;
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const int64_t saturation_limit;
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const PixelMask &mask;
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std::vector<bool> mask_resolution;
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float mask_high_res;
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float mask_low_res;
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void UpdateMaskResolution(const SpotFindingSettings& settings);
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template <class T>
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void Analyze(DataMessage &output, const uint8_t *image, T err_pixel_val, T sat_pixel_val, AzimuthalIntegrationProfile &profile, const SpotFindingSettings &settings);
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public:
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MXAnalysisWithoutFPGA(const DiffractionExperiment &experiment, const AzimuthalIntegration &integration,
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const PixelMask &mask, IndexAndRefine &indexer);
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void Analyze(DataMessage &output, std::vector<uint8_t> &buffer, AzimuthalIntegrationProfile &profile, const SpotFindingSettings &spot_finding_settings);
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};
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#endif //JFJOCH_IMAGEANALYSISCPU_H
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