leonarski_fandClaude Opus 4.8
383072ac80
Make the inline settings dock the single home for processing settings and retire the separate Processing-settings window (and the dock<->window sync): - "Analyze image" / "Analyze dataset" move to the top of the panel; the MX/AzInt toggle decides the dataset-job kind, so the job dialog drops its mode combo. - The panel gains the most-used spot-finding (max spots, high-resolution, min pixels), Bragg (Gaussian profile-fit, r1/r2/r3) and scaling (partiality, "3D rotation scaling" = rot3d combine + scale-fulls, merge Friedel, refine B, resolution limit) handles, a live indexing-algorithm description line, and now owns the Bragg/Scaling settings. The now-unused window tab classes are deleted. - Complete the PixelRefine removal on the viewer side (the "Pixel refinement" option + profile-multiplier widget), fixing the transient HEAD breakage. New JFJochMergeStatsWindow: an analysis pop-up for a finished merge (hero numbers over a per-resolution plot / per-shell table), auto-opened on completion and reopenable from the processing-jobs dock. Fixes: disable tear-off dock floating (a floated dock is a dead off-screen window under WSLg, which has no window manager); version the saved dock layout so a stale arrangement is discarded instead of restoring a broken one; keep the Analyze-button icons; right-align and equal-width the stats table; line-plot / table toggle icons (ToolbarIcons gains linePlot + table). Add ScalingSettings::HighResolutionLimit_A(optional) so the panel can clear the resolution limit. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
88 lines
3.3 KiB
C++
88 lines
3.3 KiB
C++
// SPDX-FileCopyrightText: 2026 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#pragma once
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#include <optional>
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#include "JFJochException.h"
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enum class PartialityModel { Fixed, Rotation, Unity };
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enum class IntensityFormat { Text, mmCIF, MTZ};
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class ScalingSettings {
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std::optional<PartialityModel> partiality_mode;
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bool refine_b = false;
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double max_b = 200.0;
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double min_b = -50.0;
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bool refine_wedge = false;
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bool merge_friedel = true;
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std::optional<double> high_resolution_limit_A;
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std::optional<double> wedge_for_scaling;
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double min_partiality = 0.02;
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double min_cc_for_image = 0.0;
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double outlier_reject_nsigma = 0.0; // per-observation merge outlier rejection (XDS/DIALS-style); 0 = off, e.g. 6 enables
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// The "-P rot3d" 3D combine: scale per-frame as Rotation, then weight-sum each reflection's
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// per-frame partials into one counting-limited full before merging (orthogonal to the partiality
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// model, which stays Rotation - see Combine3D).
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bool combine_3d = false;
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// Scale fulls: after the rot3d combine, refit a per-frame scale on the combined fulls (XDS
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// order). A no-op without rot3d.
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bool scale_fulls = false;
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double rfree_fraction = 0.05;
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IntensityFormat intensity_format = IntensityFormat::MTZ;
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bool scaling_regularize = false;
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public:
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ScalingSettings& SetPartialityModel(PartialityModel mode);
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ScalingSettings& RefineB(bool input);
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ScalingSettings& RefineRotationWedge(bool input);
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ScalingSettings& RotationWedgeForScaling(std::optional<double> input);
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ScalingSettings& MergeFriedel(bool input);
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ScalingSettings& HighResolutionLimit_A(double limit);
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ScalingSettings& HighResolutionLimit_A(std::optional<double> limit); // nullopt clears the limit
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ScalingSettings& MinPartiality(double min_partiality);
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ScalingSettings& MinCCForImage(double min_cc_for_image);
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ScalingSettings& OutlierRejectNsigma(double input);
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ScalingSettings& Combine3D(bool input);
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ScalingSettings& ScaleFulls(bool input);
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ScalingSettings& RfreeFraction(double input);
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ScalingSettings& FileFormat(IntensityFormat input);
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ScalingSettings& ScalingRegularize(bool input);
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[[nodiscard]] bool GetRefineB() const;
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[[nodiscard]] bool GetRefineWedge() const;
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[[nodiscard]] double GetMinB() const;
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[[nodiscard]] double GetMaxB() const;
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[[nodiscard]] double GetMinMosaicity() const;
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[[nodiscard]] double GetDefaultMosaicity() const;
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[[nodiscard]] double GetMaxMosaicity() const;
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[[nodiscard]] double GetMinWedge() const;
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[[nodiscard]] std::optional<double> GetRotationWedgeForScaling() const;
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[[nodiscard]] double GetMaxWedge() const;
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[[nodiscard]] bool GetMergeFriedel() const;
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[[nodiscard]] std::optional<PartialityModel> GetPartialityModel() const;
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[[nodiscard]] std::optional<double> GetHighResolutionLimit_A() const;
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[[nodiscard]] double GetMinPartiality() const;
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[[nodiscard]] double GetMinCCForImage() const;
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[[nodiscard]] double GetOutlierRejectNsigma() const;
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[[nodiscard]] bool GetCombine3D() const;
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[[nodiscard]] bool GetScaleFulls() const;
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[[nodiscard]] double GetRfreeFraction() const;
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[[nodiscard]] IntensityFormat GetFileFormat() const;
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[[nodiscard]] bool GetScalingRegularize() const;
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};
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