rugnux: move rugnux_cli.cpp from tools/ to rugnux/
The offline analysis CLI belongs next to its Rugnux library. Move the source and the ADD_EXECUTABLE(rugnux ...) target (plus the Windows wingetopt link) into rugnux/CMakeLists.txt; the ../reader, ../common, ../image_analysis includes are unchanged (both dirs sit one level under the root) and ../rugnux/Rugnux.h becomes a local Rugnux.h. rugnux/ is added before tools/ in every build config, so viewer-only and Windows packages still get the CLI. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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@@ -9,3 +9,14 @@ ADD_LIBRARY(Rugnux STATIC
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)
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TARGET_LINK_LIBRARIES(Rugnux JFJochReader JFJochImageAnalysis JFJochWriter)
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# rugnux is the single offline analysis CLI: full pipeline by default, plus --azint-only
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# (azimuthal integration) and --scale (re-scale/merge stored reflections) modes.
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ADD_EXECUTABLE(rugnux rugnux_cli.cpp)
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TARGET_LINK_LIBRARIES(rugnux Rugnux JFJochReader JFJochImageAnalysis JFJochWriter)
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INSTALL(TARGETS rugnux RUNTIME COMPONENT viewer)
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# On Windows this CLI gets getopt/getopt_long from the vendored wingetopt shim (libc has none).
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IF (WIN32)
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TARGET_LINK_LIBRARIES(rugnux wingetopt)
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ENDIF()
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@@ -28,7 +28,7 @@
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#include "../image_analysis/scale_merge/ResolutionCutoff.h"
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#include "../image_analysis/scale_merge/TwinningAnalysis.h"
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#include "../image_analysis/scale_merge/SearchSpaceGroup.h"
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#include "../rugnux/Rugnux.h"
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#include "Rugnux.h"
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// Default rot3d per-frame scale-G smoothing range (XDS DELPHI-like), in degrees of rotation.
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constexpr double SMOOTH_G_DEFAULT_DEG = 5.0;
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@@ -8,11 +8,7 @@ ADD_EXECUTABLE(jfjoch_extract_hkl jfjoch_extract_hkl.cpp
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TARGET_LINK_LIBRARIES(jfjoch_extract_hkl JFJochReader)
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INSTALL(TARGETS jfjoch_extract_hkl RUNTIME COMPONENT viewer)
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# rugnux is the single offline analysis CLI: full pipeline by default, plus --azint-only
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# (azimuthal integration) and --scale (re-scale/merge stored reflections) modes.
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ADD_EXECUTABLE(rugnux rugnux_cli.cpp)
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TARGET_LINK_LIBRARIES(rugnux Rugnux JFJochReader JFJochImageAnalysis JFJochWriter)
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INSTALL(TARGETS rugnux RUNTIME COMPONENT viewer)
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# rugnux, the single offline analysis CLI, lives in rugnux/ next to its library.
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# In-place re-compress /entry/data/data of a _data file from bitshuffle/LZ4 to bitshuffle/zstd.
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ADD_EXECUTABLE(jfjoch_recompress jfjoch_recompress.cpp)
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@@ -22,7 +18,6 @@ INSTALL(TARGETS jfjoch_recompress RUNTIME COMPONENT viewer)
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# On Windows these CLIs get getopt/getopt_long from the vendored wingetopt shim (libc has none).
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IF (WIN32)
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TARGET_LINK_LIBRARIES(jfjoch_extract_hkl wingetopt)
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TARGET_LINK_LIBRARIES(rugnux wingetopt)
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ENDIF()
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# Online / hardware tools (broker, FPGA, receiver, detector). They link the non-portable
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