From ea719742ceba9987ea25867454ca644049677a92 Mon Sep 17 00:00:00 2001 From: Filip Leonarski Date: Wed, 17 May 2023 22:53:41 +0200 Subject: [PATCH] DiffractionExperiment: Solid angle correction is saved with the master file --- frame_serialize/JFJochFrameDeserializer.cpp | 2 + frame_serialize/JFJochFrameSerializer.cpp | 3 +- frame_serialize/StartMessage.h | 1 + grpc/jfjoch.proto | 1 + image_analysis/RadialIntegrationMapping.cpp | 8 ++ image_analysis/RadialIntegrationMapping.h | 2 + image_analysis/RadialIntegrationProfile.cpp | 6 +- image_analysis/RadialIntegrationProfile.h | 2 +- python/jfjoch_pb2.py | 132 ++++++++++---------- receiver/JFJochReceiver.cpp | 8 +- tests/CBORTest.cpp | 4 +- writer/HDF5NXmx.cpp | 4 + 12 files changed, 99 insertions(+), 74 deletions(-) diff --git a/frame_serialize/JFJochFrameDeserializer.cpp b/frame_serialize/JFJochFrameDeserializer.cpp index e31e02fa..fd49aacb 100644 --- a/frame_serialize/JFJochFrameDeserializer.cpp +++ b/frame_serialize/JFJochFrameDeserializer.cpp @@ -511,6 +511,8 @@ void JFJochFrameDeserializer::ProcessStartMessageUserDataElement(CborValue &valu start_message.rad_int_bin_number = GetCBORInt(map_value); else if (key == "rad_int_bin_to_q") GetCBORFloatArray(map_value, start_message.rad_int_bin_to_q); + else if (key == "rad_int_solid_angle_corr") + GetCBORFloatArray(map_value, start_message.rad_int_solid_angle_corr); else if (key == "summation") start_message.summation = GetCBORUInt(map_value); else if (key == "storage_cell_number") diff --git a/frame_serialize/JFJochFrameSerializer.cpp b/frame_serialize/JFJochFrameSerializer.cpp index f9883137..cda76dfa 100644 --- a/frame_serialize/JFJochFrameSerializer.cpp +++ b/frame_serialize/JFJochFrameSerializer.cpp @@ -270,7 +270,7 @@ inline void CBOR_ENC_USER_DATA(CborEncoder &encoder, const StartMessage& message CborEncoder mapEncoder; cborErr(cbor_encode_text_stringz(&encoder, "user_data")); - cborErr(cbor_encoder_create_map(&encoder, &mapEncoder, 19)); + cborErr(cbor_encoder_create_map(&encoder, &mapEncoder, 20)); CBOR_ENC(mapEncoder, "file_prefix", message.file_prefix); CBOR_ENC(mapEncoder, "sample_name", message.sample_name); @@ -303,6 +303,7 @@ inline void CBOR_ENC_USER_DATA(CborEncoder &encoder, const StartMessage& message CBOR_ENC(mapEncoder, "instrument_name_short", message.instrument_name_short); CBOR_ENC(mapEncoder, "rad_int_bin_number", message.rad_int_bin_number); CBOR_ENC(mapEncoder, "rad_int_bin_to_q", message.rad_int_bin_to_q); + CBOR_ENC(mapEncoder, "rad_int_solid_angle_corr", message.rad_int_solid_angle_corr); CBOR_ENC(mapEncoder, "summation", message.summation); cborErr(cbor_encoder_close_container(&encoder, &mapEncoder)); } diff --git a/frame_serialize/StartMessage.h b/frame_serialize/StartMessage.h index e2a669e3..870cdff9 100644 --- a/frame_serialize/StartMessage.h +++ b/frame_serialize/StartMessage.h @@ -79,6 +79,7 @@ struct StartMessage { uint64_t summation; std::vector rad_int_bin_to_q; + std::vector rad_int_solid_angle_corr; }; #endif //JUNGFRAUJOCH_STARTMESSAGE_H diff --git a/grpc/jfjoch.proto b/grpc/jfjoch.proto index 7cc93e95..8efd8614 100644 --- a/grpc/jfjoch.proto +++ b/grpc/jfjoch.proto @@ -278,6 +278,7 @@ message PlotRequest { message RadialIntegrationProfiles { map plots = 1; + repeated float solid_angle_correction = 2; } // Writer diff --git a/image_analysis/RadialIntegrationMapping.cpp b/image_analysis/RadialIntegrationMapping.cpp index e3441c40..5ceca4bb 100644 --- a/image_analysis/RadialIntegrationMapping.cpp +++ b/image_analysis/RadialIntegrationMapping.cpp @@ -54,6 +54,10 @@ RadialIntegrationMapping::RadialIntegrationMapping(const DiffractionExperiment& bin_to_q.resize(max_bin_number + 1); for (int i = 0; i < max_bin_number + 1; i++) bin_to_q[i] = static_cast(q_spacing * (i + 0.5) + low_q); + + solid_angle_corr.resize(max_bin_number + 1); + for (int i = 0; i < max_bin_number + 1; i++) + solid_angle_corr[i] = 1.0f / experiment.CalcRadIntSolidAngleCorr(bin_to_q[i]); } uint16_t RadialIntegrationMapping::GetBinNumber() const { @@ -68,6 +72,10 @@ const std::vector &RadialIntegrationMapping::GetBinToQ() const { return bin_to_q; } +const std::vector &RadialIntegrationMapping::GetSolidAngleCorr() const { + return solid_angle_corr; +} + double RadialIntegrationMapping::QToBin(double q) const { return std::min(static_cast(max_bin_number), std::max(0.0, (q - low_q) / q_spacing)); } \ No newline at end of file diff --git a/image_analysis/RadialIntegrationMapping.h b/image_analysis/RadialIntegrationMapping.h index e3a74332..4c185b19 100644 --- a/image_analysis/RadialIntegrationMapping.h +++ b/image_analysis/RadialIntegrationMapping.h @@ -10,6 +10,7 @@ class RadialIntegrationMapping { const double low_q, high_q, q_spacing; std::vector bin_to_q; + std::vector solid_angle_corr; std::vector pixel_to_bin; uint16_t max_bin_number; public: @@ -17,6 +18,7 @@ public: [[nodiscard]] uint16_t GetBinNumber() const; [[nodiscard]] const std::vector &GetPixelToBinMapping() const; [[nodiscard]] const std::vector &GetBinToQ() const; + [[nodiscard]] const std::vector &GetSolidAngleCorr() const; [[nodiscard]] double QToBin(double q) const; }; diff --git a/image_analysis/RadialIntegrationProfile.cpp b/image_analysis/RadialIntegrationProfile.cpp index 9762542d..cbd66737 100644 --- a/image_analysis/RadialIntegrationProfile.cpp +++ b/image_analysis/RadialIntegrationProfile.cpp @@ -9,12 +9,10 @@ RadialIntegrationProfile::RadialIntegrationProfile(RadialIntegrationMapping &map : bin_to_q(mapping.GetBinToQ()), sum(mapping.GetBinNumber(), 0), count(mapping.GetBinNumber(), 0), - corrections(mapping.GetBinNumber(), 1.0f){ - for (int i = 0; i < corrections.size(); i++) - corrections[i] = 1.0f / experiment.CalcRadIntSolidAngleCorr(bin_to_q[i]); + corrections(mapping.GetSolidAngleCorr()) { } -const std::vector &RadialIntegrationProfile::GetSolidAngleCorrection() const { +const std::vector &RadialIntegrationProfile::GetSolidAngleCorr() const { return corrections; } diff --git a/image_analysis/RadialIntegrationProfile.h b/image_analysis/RadialIntegrationProfile.h index fa942760..f8b00c62 100644 --- a/image_analysis/RadialIntegrationProfile.h +++ b/image_analysis/RadialIntegrationProfile.h @@ -21,7 +21,7 @@ public: void Add(const std::vector &sum, const std::vector &count); std::vector GetResult(bool solid_angle_correction) const; void GetPlot(JFJochProtoBuf::Plot &plot, bool solid_angle_correction) const; - const std::vector &GetSolidAngleCorrection() const; + const std::vector &GetSolidAngleCorr() const; }; #endif //JUNGFRAUJOCH_RADIALINTEGRATIONPROFILE_H diff --git a/python/jfjoch_pb2.py b/python/jfjoch_pb2.py index 44d69599..d1a43afa 100644 --- a/python/jfjoch_pb2.py +++ b/python/jfjoch_pb2.py @@ -13,7 +13,7 @@ _sym_db = _symbol_database.Default() -DESCRIPTOR = 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_builder.BuildMessageAndEnumDescriptors(DESCRIPTOR, globals()) _builder.BuildTopDescriptorsAndMessages(DESCRIPTOR, 'jfjoch_pb2', globals()) @@ -24,18 +24,18 @@ if _descriptor._USE_C_DESCRIPTORS == False: _RADIALINTEGRATIONPROFILES_PLOTSENTRY._serialized_options = b'8\001' _FPGASTATUS_FIFOSTATUSENTRY._options = None _FPGASTATUS_FIFOSTATUSENTRY._serialized_options = b'8\001' - _COMPRESSION._serialized_start=8705 - _COMPRESSION._serialized_end=8789 - _DETECTORTYPE._serialized_start=8791 - _DETECTORTYPE._serialized_end=8830 - _DETECTORMODE._serialized_start=8832 - _DETECTORMODE._serialized_end=8922 - _FPGAFIFOSTATUS._serialized_start=8924 - _FPGAFIFOSTATUS._serialized_end=8974 - _STATE._serialized_start=8976 - _STATE._serialized_end=9070 - _PLOTTYPE._serialized_start=9072 - _PLOTTYPE._serialized_end=9176 + _COMPRESSION._serialized_start=8737 + _COMPRESSION._serialized_end=8821 + _DETECTORTYPE._serialized_start=8823 + _DETECTORTYPE._serialized_end=8862 + _DETECTORMODE._serialized_start=8864 + _DETECTORMODE._serialized_end=8954 + _FPGAFIFOSTATUS._serialized_start=8956 + _FPGAFIFOSTATUS._serialized_end=9006 + _STATE._serialized_start=9008 + _STATE._serialized_end=9102 + _PLOTTYPE._serialized_start=9104 + _PLOTTYPE._serialized_end=9208 _EMPTY._serialized_start=32 _EMPTY._serialized_end=39 _UNITCELL._serialized_start=41 @@ -83,57 +83,57 @@ if _descriptor._USE_C_DESCRIPTORS == False: _PLOTREQUEST._serialized_start=4159 _PLOTREQUEST._serialized_end=4261 _RADIALINTEGRATIONPROFILES._serialized_start=4264 - _RADIALINTEGRATIONPROFILES._serialized_end=4428 - _RADIALINTEGRATIONPROFILES_PLOTSENTRY._serialized_start=4362 - _RADIALINTEGRATIONPROFILES_PLOTSENTRY._serialized_end=4428 - _WRITERINPUT._serialized_start=4430 - _WRITERINPUT._serialized_end=4492 - _DATAFILESTATISTICS._serialized_start=4494 - _DATAFILESTATISTICS._serialized_end=4545 - _WRITEROUTPUT._serialized_start=4548 - _WRITEROUTPUT._serialized_end=4689 - _DETECTORMODULECONFIG._serialized_start=4692 - 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_GRPC_JFJOCHBROKER._serialized_start=10575 + _GRPC_JFJOCHBROKER._serialized_end=12264 # @@protoc_insertion_point(module_scope) diff --git a/receiver/JFJochReceiver.cpp b/receiver/JFJochReceiver.cpp index 4ca4a611..18f4fb1d 100644 --- a/receiver/JFJochReceiver.cpp +++ b/receiver/JFJochReceiver.cpp @@ -153,6 +153,7 @@ JFJochReceiver::JFJochReceiver(const JFJochProtoBuf::ReceiverInput &settings, if (rad_int_mapping) { message.rad_int_bin_number = rad_int_mapping->GetBinNumber(); message.rad_int_bin_to_q = rad_int_mapping->GetBinToQ(); + message.rad_int_solid_angle_corr = rad_int_mapping->GetSolidAngleCorr(); } else message.rad_int_bin_number = 0; @@ -704,12 +705,17 @@ JFJochProtoBuf::RadialIntegrationProfiles JFJochReceiver::GetRadialIntegrationPr auto &map = *ret.mutable_plots(); - if (rad_int_profile) + if (rad_int_profile) { rad_int_profile->GetPlot(map["dataset"], true); + auto &corr = rad_int_profile->GetSolidAngleCorr(); + for (const auto &i: corr) + ret.add_solid_angle_correction(i); + } for (int i = 0; i < rad_int_profile_per_file.size(); i++) rad_int_profile_per_file[i]->GetPlot(map["file" + std::to_string(i)], true); + return ret; } diff --git a/tests/CBORTest.cpp b/tests/CBORTest.cpp index e4017671..adac07f9 100644 --- a/tests/CBORTest.cpp +++ b/tests/CBORTest.cpp @@ -59,7 +59,8 @@ TEST_CASE("CBORSerialize_Start", "[CBOR]") { .instrument_name_short = "PXIII", .rad_int_bin_number = 35, .summation = 567, - .rad_int_bin_to_q = {0.1, 0.2, 0.3, 0.5} + .rad_int_bin_to_q = {0.1, 0.2, 0.3, 0.5}, + .rad_int_solid_angle_corr = {10, 20, 30, 50} }; message.pixel_mask["sc0"] = std::vector(456*457, 15); @@ -113,6 +114,7 @@ TEST_CASE("CBORSerialize_Start", "[CBOR]") { CHECK(output_message.rad_int_bin_number == message.rad_int_bin_number); CHECK(output_message.summation == message.summation); CHECK(output_message.rad_int_bin_to_q == message.rad_int_bin_to_q); + CHECK(output_message.rad_int_solid_angle_corr == message.rad_int_solid_angle_corr); for (int i = 0; i < 3; i++) CHECK(output_message.detector_translation[i] == message.detector_translation[i]); diff --git a/writer/HDF5NXmx.cpp b/writer/HDF5NXmx.cpp index a107d2c0..68f82595 100644 --- a/writer/HDF5NXmx.cpp +++ b/writer/HDF5NXmx.cpp @@ -262,6 +262,10 @@ void HDF5Metadata::RadInt(HDF5File *hdf5_file, const StartMessage &start, const HDF5Group(*hdf5_file, "/entry/result").NXClass("NXcollection"); HDF5Group rad_int_group(*hdf5_file, "/entry/result/rad_int"); rad_int_group.SaveVector("bin_to_q", start.rad_int_bin_to_q); + + if (!start.rad_int_solid_angle_corr.empty()) + rad_int_group.SaveVector("solid_angle_corr", start.rad_int_solid_angle_corr); + for (const auto &[x,y] : end.rad_int_result) rad_int_group.SaveVector(x, y); }