Tests: the stills rocking width - the window at a reflection's resolution, _process.h5 round trip
StillsPartialityRefine_MeasureRunWidth_WindowAtReflectionResolution, JFJochReader_StillsRunWidth. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu (cherry picked from commit dafb8d1bf996d1000741eecf019aee780dd91ebe)
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@@ -2776,6 +2776,61 @@ TEST_CASE("JFJochReader_ReadReflections_Reindex", "[HDF5][Full]") {
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REQUIRE(H5Fget_obj_count(H5F_OBJ_ALL, H5F_OBJ_ALL) == 0);
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}
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// A stills run's rocking curve (the one its partialities were computed from) goes to the master file and
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// comes back whole, so --mode scale merges with it instead of measuring another; a file without it reads
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// back without one.
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TEST_CASE("JFJochReader_StillsRunWidth", "[HDF5][Full]") {
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for (const bool with_width: {true, false}) {
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DiffractionExperiment x(DetJF(1));
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x.FilePrefix("read_stills_run_width")
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.ImagesPerTrigger(1)
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.ImagesPerFile(1)
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.OverwriteExistingFiles(true)
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.BitDepthImage(16)
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.PixelSigned(true)
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.SetFileWriterFormat(FileWriterFormat::NXmxVDS)
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.Compression(CompressionAlgorithm::NO_COMPRESSION);
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const StillsRunWidth w{.gamma0 = 1.25e-4, .gamma_e = 6.1e-4, .bandwidth_sigma = 1.7e-3,
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.radial_scale = 1.0 + 3.3e-4,
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.table_dstar = {0.1, 0.25, 0.4}, .table_s = {1.1e-4, 1.4e-4, 2.2e-4}};
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RegisterHDF5Filter();
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{
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StartMessage start_message;
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x.FillMessage(start_message);
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FileWriter writer(start_message);
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std::vector<int16_t> image(x.GetPixelsNum(), 0);
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DataMessage message{};
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message.image = CompressedImage(image, x.GetXPixelsNum(), x.GetYPixelsNum());
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message.number = 0;
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REQUIRE_NOTHROW(writer.WriteHDF5(message));
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EndMessage end_message;
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end_message.max_image_number = 1;
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if (with_width)
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end_message.stills_run_width = w;
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writer.WriteHDF5(end_message);
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writer.Finalize();
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}
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{
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JFJochHDF5Reader reader;
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REQUIRE_NOTHROW(reader.ReadFile("read_stills_run_width_master.h5"));
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const auto &got = reader.GetDataset()->stills_run_width;
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REQUIRE(got.has_value() == with_width);
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if (with_width) {
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CHECK(got->gamma0 == w.gamma0);
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CHECK(got->gamma_e == w.gamma_e);
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CHECK(got->bandwidth_sigma == w.bandwidth_sigma);
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CHECK(got->radial_scale == w.radial_scale);
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CHECK(got->table_dstar == w.table_dstar);
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CHECK(got->table_s == w.table_s);
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}
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}
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remove("read_stills_run_width_master.h5");
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remove("read_stills_run_width_data_000001.h5");
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}
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REQUIRE(H5Fget_obj_count(H5F_OBJ_ALL, H5F_OBJ_ALL) == 0);
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}
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static std::vector<SpotToSave> MakeTestSpots(int i) {
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return {
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SpotToSave{
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