Move all image analysis related code to image_analysis/ directory

image_analysis/IndexerWrapper.cpp

@@ -0,0 +1,35 @@
+// Copyright (2019-2022) Paul Scherrer Institute
+// SPDX-License-Identifier: GPL-3.0-or-later
+
+#include "IndexerWrapper.h"
+
+void IndexerWrapper::Setup(const UnitCell &cell) {
+    indexer.iCellM() = CrystalLattice(cell).GetEigenMatrix();
+}
+
+std::vector<CrystalLattice> IndexerWrapper::Run(const std::vector<Coord> &coord) {
+    std::vector<CrystalLattice> ret;
+
+    if (coord.size() <  MIN_SPOTS_TO_INDEX)
+        return ret;
+
+    size_t nspots = std::min<size_t>(MAX_SPOTS_TO_INDEX, coord.size());
+
+    for (int i = 0; i < nspots; i++) {
+        indexer.spotX(i) = coord[i].x;
+        indexer.spotY(i) = coord[i].y;
+        indexer.spotZ(i) = coord[i].z;
+    }
+
+    // Index
+    indexer.index(1, nspots);
+
+    // Get best cell
+    auto id = fast_feedback::refine::best_cell(indexer.oScoreV());
+
+    // Check if is viable
+    if (fast_feedback::refine::is_viable_cell(indexer.oCell(id), indexer.Spots(), 0.05f, 9u))
+        ret.emplace_back(indexer.oCell(id));
+
+    return ret;
+}