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v1.0.0-rc.156 (#66)
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Browse Source 
This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use.

* jfjoch_process: Major rotation (rot3d) data processing overhaul - robust profile-fit integration, Cauchy-loss scaling with optional absorption surface, de-novo indexing and space-group/centering determination fixes, and merging statistics + ISa in the mmCIF output.
* jfjoch_process: Add EXPERIMENTAL ice-ring detection (--detect-ice-rings) that excludes ice reflections from scaling.
* Compression: Add BSHUF_ZSTD_RLE_HUFF, make compression size-aware (drop frames that don't fit rather than aborting), and add the jfjoch_recompress tool.
* jfjoch_viewer: Report "Multiple lattices detected" and grey out "Analyze dataset" on a live connection.
* jfjoch_broker: Write smargon chi/phi goniometer positions to NXmx; read sensor thickness/material from HDF5 metadata.
* CI: Build Windows (CUDA and non-CUDA) installers.Reviewed-on: #66

Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
This commit was merged in pull request #66.
This commit is contained in:
leonarski_f
2026-07-03 19:18:56 +02:00
committed by leonarski_f
parent 54c667190f
commit d6389e12da
295 changed files with 9853 additions and 3031 deletions
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tests/FrameTransformationTest.cpp
+14 -7
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@@ -97,7 +97,8 @@ TEST_CASE("FrameTransformation_Raw_NoCompression_bshuf_lz4" ,"") {
auto image = transformation.GetCompressedImage();
REQUIRE(read_be64(image.GetCompressed()) == experiment.GetPixelsNum() * experiment.GetByteDepthImage());
REQUIRE(read_be32(image.GetCompressed() + 8) == JFJochBitShuffleCompressor::DefaultBlockSize *
REQUIRE(read_be32(image.GetCompressed() + 8) == JFJochBitShuffleCompressor::BlockSize(experiment.GetCompressionAlgorithm(),
experiment.GetByteDepthImage()) *
experiment.GetByteDepthImage());
std::vector<int16_t> output;
@@ -238,7 +239,8 @@ TEST_CASE("FrameTransformation_Converted_bshuf_lz4" ,"") {
auto image = transformation.GetCompressedImage();
REQUIRE(read_be64(image.GetCompressed()) == experiment.GetPixelsNum() * experiment.GetByteDepthImage());
REQUIRE(read_be32(image.GetCompressed() + 8) == JFJochBitShuffleCompressor::DefaultBlockSize *
REQUIRE(read_be32(image.GetCompressed() + 8) == JFJochBitShuffleCompressor::BlockSize(experiment.GetCompressionAlgorithm(),
experiment.GetByteDepthImage()) *
experiment.GetByteDepthImage());
std::vector<uint16_t> output;
@@ -297,7 +299,8 @@ TEST_CASE("FrameTransformation_Converted_bshuf_zstd" ,"") {
auto image = transformation.GetCompressedImage();
REQUIRE(read_be64(image.GetCompressed()) == experiment.GetPixelsNum() * experiment.GetByteDepthImage());
REQUIRE(read_be32(image.GetCompressed() + 8) == JFJochBitShuffleCompressor::DefaultBlockSize *
REQUIRE(read_be32(image.GetCompressed() + 8) == JFJochBitShuffleCompressor::BlockSize(experiment.GetCompressionAlgorithm(),
experiment.GetByteDepthImage()) *
experiment.GetByteDepthImage());
std::vector<uint16_t> output;
@@ -356,7 +359,8 @@ TEST_CASE("FrameTransformation_Converted_bshuf_zstd_rle" ,"") {
auto image = transformation.GetCompressedImage();
REQUIRE(read_be64(image.GetCompressed()) == experiment.GetPixelsNum() * experiment.GetByteDepthImage());
REQUIRE(read_be32(image.GetCompressed() + 8) == JFJochBitShuffleCompressor::DefaultBlockSize *
REQUIRE(read_be32(image.GetCompressed() + 8) == JFJochBitShuffleCompressor::BlockSize(experiment.GetCompressionAlgorithm(),
experiment.GetByteDepthImage()) *
experiment.GetByteDepthImage());
std::vector<uint16_t> output;
@@ -418,7 +422,8 @@ TEST_CASE("FrameTransformation_Converted_bshuf_zstd_32bit" ,"") {
auto image = transformation.GetCompressedImage();
REQUIRE(read_be64(image.GetCompressed()) == experiment.GetPixelsNum() * experiment.GetByteDepthImage());
REQUIRE(read_be32(image.GetCompressed() + 8) == JFJochBitShuffleCompressor::DefaultBlockSize *
REQUIRE(read_be32(image.GetCompressed() + 8) == JFJochBitShuffleCompressor::BlockSize(experiment.GetCompressionAlgorithm(),
experiment.GetByteDepthImage()) *
experiment.GetByteDepthImage());
std::vector<uint32_t> output;
@@ -481,7 +486,8 @@ TEST_CASE("FrameTransformation_Converted_bshuf_zstd_8bit" ,"") {
auto image = transformation.GetCompressedImage();
REQUIRE(read_be64(image.GetCompressed()) == experiment.GetPixelsNum() * experiment.GetByteDepthImage());
REQUIRE(read_be32(image.GetCompressed() + 8) == JFJochBitShuffleCompressor::DefaultBlockSize *
REQUIRE(read_be32(image.GetCompressed() + 8) == JFJochBitShuffleCompressor::BlockSize(experiment.GetCompressionAlgorithm(),
experiment.GetByteDepthImage()) *
experiment.GetByteDepthImage());
std::vector<int8_t> output;
@@ -548,7 +554,8 @@ TEST_CASE("FrameTransformation_Converted_bshuf_zstd_unsigned_16bit" ,"") {
auto image = transformation.GetCompressedImage();
REQUIRE(read_be64(image.GetCompressed()) == experiment.GetPixelsNum() * experiment.GetByteDepthImage());
REQUIRE(read_be32(image.GetCompressed() + 8) == JFJochBitShuffleCompressor::DefaultBlockSize *
REQUIRE(read_be32(image.GetCompressed() + 8) == JFJochBitShuffleCompressor::BlockSize(experiment.GetCompressionAlgorithm(),
experiment.GetByteDepthImage()) *
experiment.GetByteDepthImage());
std::vector<uint16_t> output;