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v1.0.0-rc.72

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This commit is contained in:
leonarski_f
2025-09-08 20:28:59 +02:00
parent 6c88c6902e
commit c67337cfe1
275 changed files with 7525 additions and 1039 deletions
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69
frame_serialize/CBORStream2Deserializer.cpp
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@@ -410,8 +410,14 @@ namespace {
s.ice_ring = GetCBORBool(map_value);
else if (key == "indexed")
s.indexed = GetCBORBool(map_value);
else if (key == "angle")
s.angle_from_ewald_sphere = GetCBORFloat(map_value);
else if (key == "h")
s.h = GetCBORInt(map_value);
else if (key == "k")
s.k = GetCBORInt(map_value);
else if (key == "l")
s.l = GetCBORInt(map_value);
else if (key == "dist_ewald")
s.dist_ewald_sphere = GetCBORFloat(map_value);
else
cbor_value_advance(&map_value);
}
@@ -429,6 +435,49 @@ namespace {
cborErr(cbor_value_leave_container(&value, &array_value));
}
Reflection GetReflection(CborValue &value) {
Reflection r{};
CborValue map_value;
cborErr(cbor_value_enter_container(&value, &map_value));
while (!cbor_value_at_end(&map_value)) {
auto key = GetCBORString(map_value);
if (key == "h")
r.h = GetCBORInt(map_value);
else if (key == "k")
r.k = GetCBORInt(map_value);
else if (key == "l")
r.l = GetCBORInt(map_value);
else if (key == "center_x_pxl")
r.predicted_x = GetCBORFloat(map_value);
else if (key == "center_y_pxl")
r.predicted_y = GetCBORFloat(map_value);
else if (key == "d")
r.d = GetCBORFloat(map_value);
else if (key == "I")
r.I = GetCBORFloat(map_value);
else if (key == "bkg")
r.bkg = GetCBORFloat(map_value);
else if (key == "sigma")
r.sigma = GetCBORFloat(map_value);
else if (key == "image")
r.image_number = GetCBORFloat(map_value);
else
cbor_value_advance(&map_value);
}
cborErr(cbor_value_leave_container(&value, &map_value));
return r;
}
void GetCBORReflections(DataMessage &message, CborValue &value) {
size_t array_len = GetCBORArrayLen(value);
CborValue array_value;
cborErr(cbor_value_enter_container(&value, &array_value));
for (int i = 0; i < array_len; i++)
message.reflections.push_back(GetReflection(array_value));
cborErr(cbor_value_leave_container(&value, &array_value));
}
CBORImageType DecodeType(CborValue &value) {
if (cbor_value_at_end(&value))
throw JFJochException(JFJochExceptionCategory::CBORError, "Message empty");
@@ -528,6 +577,8 @@ namespace {
}
} else if (key == "spots")
GetCBORSpots(message, value);
else if (key == "reflections")
GetCBORReflections(message, value);
else if (key == "spot_count")
message.spot_count = GetCBORUInt(value);
else if (key == "spot_count_low_res")
@@ -548,8 +599,8 @@ namespace {
message.indexing_time_s = GetCBORFloat(value);
else if (key == "processing_time")
message.processing_time_s = GetCBORFloat(value);
else if (key == "mosaicity")
message.mosaicity = GetCBORFloat(value);
else if (key == "profile_radius")
message.profile_radius = GetCBORFloat(value);
else if (key == "b_factor")
message.b_factor = GetCBORFloat(value);
else if (key == "indexing_unit_cell")
@@ -590,10 +641,10 @@ namespace {
message.bkg_estimate = GetCBORFloat(value);
else if (key == "adu_histogram")
GetCBORUInt64Array(value, message.adu_histogram);
else if (key == "beam_center_x")
message.beam_center_x = GetCBORFloat(value);
else if (key == "beam_center_y")
message.beam_center_y = GetCBORFloat(value);
else if (key == "beam_corr_x")
message.beam_corr_x = GetCBORFloat(value);
else if (key == "beam_corr_y")
message.beam_corr_y = GetCBORFloat(value);
else if (key == "roi_integrals")
ProcessROIElementMap(message, value);
else {
@@ -896,7 +947,7 @@ namespace {
if (j["geom_refinement_algorithm"] == "beam_center")
message.geom_refinement_algorithm = GeomRefinementAlgorithmEnum::BeamCenter;
else if (j["geom_refinement_algorithm"] == "beam_center_tetragonal")
message.geom_refinement_algorithm = GeomRefinementAlgorithmEnum::BeamCenterTetragonal;
message.geom_refinement_algorithm = GeomRefinementAlgorithmEnum::BeamCenterSymmetry;
else
message.geom_refinement_algorithm = GeomRefinementAlgorithmEnum::None;
}