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v1.0.0-rc.70

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leonarski_f
2025-08-27 06:21:10 +02:00
parent 06978efe6b
commit bb32f27635
229 changed files with 2446 additions and 399 deletions
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40
image_analysis/MXAnalyzer.cpp
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@@ -2,10 +2,11 @@
// SPDX-License-Identifier: GPL-3.0-only
#include "MXAnalyzer.h"
#include "CPUSpotFinder.h"
#include "spot_finding/DetModuleSpotFinder_cpu.h"
#include "../common/CUDAWrapper.h"
#include "indexing/IndexerFactory.h"
#include "SpotAnalysis.h"
#include "spot_finding/SpotAnalysis.h"
#include "geom_refinement/XtalOptimizer.h"
double stddev(const std::vector<float> &v) {
if (v.size() <= 1)
@@ -139,11 +140,38 @@ void MXAnalyzer::Process(DataMessage &message, const SpotFindingSettings& settin
if (indexer && settings.indexing) {
auto latt = indexer->Run(experiment, message).get();
if (latt && settings.quick_integration) {
auto res = BraggIntegrate2D(experiment, message.image, latt.value());
if (latt) {
DiffractionExperiment experiment_copy(experiment);
XtalOptimizerData data{
.geom = experiment_copy.GetDiffractionGeometry(),
.latt = latt.value()
};
switch (experiment.GetIndexingSettings().GetGeomRefinementAlgorithm()) {
case GeomRefinementAlgorithmEnum::None:
break;
case GeomRefinementAlgorithmEnum::BeamCenter:
XtalOptimizer(data, message.spots, false);
experiment_copy.BeamX_pxl(data.geom.GetBeamX_pxl()).BeamY_pxl(data.geom.GetBeamY_pxl());
message.beam_center_x = data.geom.GetBeamX_pxl();
message.beam_center_y = data.geom.GetBeamY_pxl();
message.indexing_lattice = data.latt;
latt = data.latt;
break;
case GeomRefinementAlgorithmEnum::BeamCenterTetragonal:
XtalOptimizer(data, message.spots, true);
experiment_copy.BeamX_pxl(data.geom.GetBeamX_pxl()).BeamY_pxl(data.geom.GetBeamY_pxl());
message.beam_center_x = data.geom.GetBeamX_pxl();
message.beam_center_y = data.geom.GetBeamY_pxl();
message.indexing_lattice = data.latt;
latt = data.latt;
break;
}
message.reflections = res.reflections;
message.b_factor = res.b_factor;
if (settings.quick_integration) {
auto res = BraggIntegrate2D(experiment_copy, message.image, latt.value());
message.reflections = res.reflections;
message.b_factor = res.b_factor;
}
}
}
}