v1.0.0-rc.178 (#88)
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* Rugnux: Processes serial crystallography data from XFELs - SACLA (MPCCD), PAL-XFEL and European XFEL (CXI), LCLS (XTC) and SwissFEL Alvra (JUNGFRAU with a CrystFEL module geometry) - with several files or Jungfraujoch master files merged in one run (`rugnux *_master.h5`). * Rugnux: Stills processing takes a known unit cell and space group as a starting point, finds the beam centre (and, with a cell, the detector distance) from the images, detects the saturation level in other facilities' files and refines the placement of individual detector panels. * Rugnux: The stills report gives R_split and CC1/2 from frame half-sets, comparable with CrystFEL. * jfjoch_viewer: Opens the same XFEL file formats. * Validation: A stills battery checks Rugnux against deposited structures from SACLA, PAL-XFEL, LCLS, European XFEL and SwissFEL. * Rugnux: More reliable convergence of rotation scaling, and live molecular replacement starts as soon as the model is uploaded. * jfjoch_broker: Initialize clears the previous dataset's bearer tokens, image buffer and live Rugnux status, and a slow CUDA JIT cache is reported at start. Reviewed-on: #88 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
This commit was merged in pull request #88.
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@@ -259,19 +259,32 @@ void JFJochViewerMenu::acknowledgementsSelected() {
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}
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void JFJochViewerMenu::openSelected() {
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QString fileName = QFileDialog::getOpenFileName(
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// Several files are one dataset: the files of a serial XFEL run (SACLA HDF5, CXI, XTC), opened as
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// rugnux opens them, with a CrystFEL geometry file among them taken as their module geometry.
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const QStringList fileNames = QFileDialog::getOpenFileNames(
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this,
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"Open File", // Dialog title
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"Open File(s)", // Dialog title
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"", // Default folder
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// A CBF is one frame per file: picking any frame opens the sweep it belongs to.
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"HDF5 Master Files (*_master.h5 *_process.h5);; HDF5 Files (*.h5);; CBF Images (*.cbf *.cbf.gz);; CCD Images (*.img *.mccd *.smv);;All Files (*)"
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"HDF5 Master Files (*_master.h5 *_process.h5);; HDF5 Files (*.h5);; CBF Images (*.cbf *.cbf.gz);; CCD Images (*.img *.mccd *.smv);; XFEL Stills (*.h5 *.cxi *.xtc *.geom);;All Files (*)"
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);
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if (!fileName.isEmpty())
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if (!fileNames.isEmpty()) {
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// Qt returns '/'-separated paths even on Windows, but HDF5's H5Fopen needs native separators
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// to recognise a UNC path (\\host\share, e.g. the WSL2 filesystem): '//host/share' is rejected,
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// while 'C:/...' still works, which is exactly the reported symptom. No-op on Linux.
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emit fileOpenSelected(QDir::toNativeSeparators(fileName), 0, 1, false);
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QStringList native;
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for (const auto &f: fileNames)
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native << QDir::toNativeSeparators(f);
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emit fileListSelected(native);
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QString first = native.front();
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for (const auto &f: native)
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if (!f.endsWith(".geom")) {
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first = f;
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break;
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}
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emit fileOpenSelected(first, 0, 1, false);
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}
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}
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void JFJochViewerMenu::closeSelected() {
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