v1.0.0-rc.178 (#88)
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* Rugnux: Processes serial crystallography data from XFELs - SACLA (MPCCD), PAL-XFEL and European XFEL (CXI), LCLS (XTC) and SwissFEL Alvra (JUNGFRAU with a CrystFEL module geometry) - with several files or Jungfraujoch master files merged in one run (`rugnux *_master.h5`).
* Rugnux: Stills processing takes a known unit cell and space group as a starting point, finds the beam centre (and, with a cell, the detector distance) from the images, detects the saturation level in other facilities' files and refines the placement of individual detector panels.
* Rugnux: The stills report gives R_split and CC1/2 from frame half-sets, comparable with CrystFEL.
* jfjoch_viewer: Opens the same XFEL file formats.
* Validation: A stills battery checks Rugnux against deposited structures from SACLA, PAL-XFEL, LCLS, European XFEL and SwissFEL.
* Rugnux: More reliable convergence of rotation scaling, and live molecular replacement starts as soon as the model is uploaded.
* jfjoch_broker: Initialize clears the previous dataset's bearer tokens, image buffer and live Rugnux status, and a slow CUDA JIT cache is reported at start.

Reviewed-on: #88
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
This commit was merged in pull request #88.
This commit is contained in:
leonarski_f authored and leonarski_f committed 2026-10-21 11:20:01 +02:00
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commit afbe844b20
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@@ -259,19 +259,32 @@ void JFJochViewerMenu::acknowledgementsSelected() {
}
void JFJochViewerMenu::openSelected() {
QString fileName = QFileDialog::getOpenFileName(
// Several files are one dataset: the files of a serial XFEL run (SACLA HDF5, CXI, XTC), opened as
// rugnux opens them, with a CrystFEL geometry file among them taken as their module geometry.
const QStringList fileNames = QFileDialog::getOpenFileNames(
this,
"Open File", // Dialog title
"Open File(s)", // Dialog title
"", // Default folder
// A CBF is one frame per file: picking any frame opens the sweep it belongs to.
"HDF5 Master Files (*_master.h5 *_process.h5);; HDF5 Files (*.h5);; CBF Images (*.cbf *.cbf.gz);; CCD Images (*.img *.mccd *.smv);;All Files (*)"
"HDF5 Master Files (*_master.h5 *_process.h5);; HDF5 Files (*.h5);; CBF Images (*.cbf *.cbf.gz);; CCD Images (*.img *.mccd *.smv);; XFEL Stills (*.h5 *.cxi *.xtc *.geom);;All Files (*)"
);
if (!fileName.isEmpty())
if (!fileNames.isEmpty()) {
// Qt returns '/'-separated paths even on Windows, but HDF5's H5Fopen needs native separators
// to recognise a UNC path (\\host\share, e.g. the WSL2 filesystem): '//host/share' is rejected,
// while 'C:/...' still works, which is exactly the reported symptom. No-op on Linux.
emit fileOpenSelected(QDir::toNativeSeparators(fileName), 0, 1, false);
QStringList native;
for (const auto &f: fileNames)
native << QDir::toNativeSeparators(f);
emit fileListSelected(native);
QString first = native.front();
for (const auto &f: native)
if (!f.endsWith(".geom")) {
first = f;
break;
}
emit fileOpenSelected(first, 0, 1, false);
}
}
void JFJochViewerMenu::closeSelected() {