Remove sample identities from the repository; document the rule
Datasets may be confidential; sample names and measured unit cells committed to the repo can leak outside the group working on them. Scrub existing occurrences and add a "No sample identities in the repository" section to CLAUDE.md (forbidden: sample/dataset names, internal codes, measured cells tied to a sample; fine: space group / lattice / twinning descriptors). - Comments: replace internal dataset codes and protein names with the crystallographic situation they illustrate (centred vs pseudo-symmetric, holohedral, cubic, F-cubic/hexagonal, ...). - Docs: same, in the analysis/writer/stream references and example configs. - Tests: rename sample-named identifiers, TEST_CASE names, file prefixes and asserted labels to neutral crystallographic names (e.g. tetragonal_uc); behaviour unchanged. Reduce the CrystFEL reference PDB to a bare CRYST1 cell file (cell.pdb) and rename the reference data file. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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@@ -366,7 +366,7 @@ TEST_CASE("ZstdHuff_MaskLike", "[ZSTD]") {
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RequireHuffRoundTrip(image);
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}
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TEST_CASE("ZstdHuff_LysoImage", "[ZSTD]") {
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TEST_CASE("ZstdHuff_BenchmarkImage", "[ZSTD]") {
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RegisterHDF5Filter(); // bitshuffle filter, needed to read the compressed benchmark dataset
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HDF5ReadOnlyFile data("../../tests/test_data/compression_benchmark.h5");
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HDF5DataSet dataset(data, "/entry/data/data");
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