Remove sample identities from the repository; document the rule
Datasets may be confidential; sample names and measured unit cells committed to the repo can leak outside the group working on them. Scrub existing occurrences and add a "No sample identities in the repository" section to CLAUDE.md (forbidden: sample/dataset names, internal codes, measured cells tied to a sample; fine: space group / lattice / twinning descriptors). - Comments: replace internal dataset codes and protein names with the crystallographic situation they illustrate (centred vs pseudo-symmetric, holohedral, cubic, F-cubic/hexagonal, ...). - Docs: same, in the analysis/writer/stream references and example configs. - Tests: rename sample-named identifiers, TEST_CASE names, file prefixes and asserted labels to neutral crystallographic names (e.g. tetragonal_uc); behaviour unchanged. Reduce the CrystFEL reference PDB to a bare CRYST1 cell file (cell.pdb) and rename the reference data file. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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@@ -40,8 +40,8 @@ TEST_CASE("CBORSerialize_Start", "[CBOR]") {
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.storage_cell_delay_ns = 15345,
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.pixel_mask_enabled = true,
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.arm_date = "abc",
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.sample_name = "lyso",
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.file_prefix = "lyso1/dir/file",
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.sample_name = "test_sample",
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.file_prefix = "test_sample/dir/file",
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.images_per_file = 12345,
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.channels = {"default", "sc2"},
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.detector_description = "EIGER 16M",
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