From a867b1c596b30bfab24bd97bef54a7ee0c037f9e Mon Sep 17 00:00:00 2001 From: Filip Leonarski Date: Tue, 9 May 2023 14:03:59 +0200 Subject: [PATCH] DiffractionExperiment: solid angle correction --- common/DiffractionExperiment.cpp | 24 ++- common/DiffractionExperiment.h | 3 + grpc/jfjoch.proto | 1 + image_analysis/RadialIntegrationProfile.cpp | 13 +- image_analysis/RadialIntegrationProfile.h | 4 +- python/jfjoch_pb2.py | 204 ++++++++++---------- receiver/JFJochReceiver.cpp | 10 +- tests/DiffractionExperimentTest.cpp | 15 +- tests/HDF5WritingTest.cpp | 4 +- tests/RadialIntegrationTest.cpp | 2 +- 10 files changed, 163 insertions(+), 117 deletions(-) diff --git a/common/DiffractionExperiment.cpp b/common/DiffractionExperiment.cpp index 03a34eb5..33b287bb 100644 --- a/common/DiffractionExperiment.cpp +++ b/common/DiffractionExperiment.cpp @@ -48,6 +48,7 @@ DiffractionExperiment::DiffractionExperiment(const DetectorSetup& det_setup) { dataset.set_images_per_trigger(1); dataset.set_summation(1); dataset.set_space_group_number(0); // not set + dataset.set_rad_int_solid_angle_corr(false); dataset.set_compression(JFJochProtoBuf::BSHUF_LZ4); @@ -766,6 +767,17 @@ float DiffractionExperiment::ResToPxl(float resolution) const { return tan_2theta * GetDetectorDistance_mm() / GetPixelSize_mm(); } +float DiffractionExperiment::CalcRadIntSolidAngleCorr(float q) const { + if (!GetSolidAngleCorrection()) + return 1.0f; + + float sin_theta = q * GetWavelength_A() / (4 * static_cast(M_PI)); + float theta = asinf(sin_theta); + float cos_two_theta = cosf(2 * theta); + float cos_two_theta_3 = cos_two_theta * cos_two_theta * cos_two_theta; + return cos_two_theta_3; +} + Coord DiffractionExperiment::LabCoord(float detector_x, float detector_y) const { // Assumes planar detector, 90 deg towards beam return {(detector_x - GetBeamX_pxl()) * GetPixelSize_mm() , @@ -1173,4 +1185,14 @@ void DiffractionExperiment::GetDetectorModuleHostname(std::vector & std::string DiffractionExperiment::GetDetectorDescription() const { return internal.detector().description(); -} \ No newline at end of file +} + +bool DiffractionExperiment::GetSolidAngleCorrection() const { + return dataset.rad_int_solid_angle_corr(); +} + +DiffractionExperiment &DiffractionExperiment::RadIntSolidAngleCorr(bool input) { + dataset.set_rad_int_solid_angle_corr(input); + return *this; +} + diff --git a/common/DiffractionExperiment.h b/common/DiffractionExperiment.h index 9920ec94..cd78ab36 100644 --- a/common/DiffractionExperiment.h +++ b/common/DiffractionExperiment.h @@ -93,6 +93,7 @@ public: DiffractionExperiment& InstrumentNameShort(std::string input); DiffractionExperiment& Binning2x2(bool input); DiffractionExperiment& ApplyPixelMaskInFPGA(bool input); + DiffractionExperiment& RadIntSolidAngleCorr(bool input); operator JFJochProtoBuf::JungfraujochSettings() const; operator JFJochProtoBuf::DetectorInput() const; @@ -187,6 +188,7 @@ public: float ResToPxl(float resolution) const; Coord LabCoord(float detector_x, float detector_y) const; float PxlToRes(float detector_x, float detector_y) const; + float CalcRadIntSolidAngleCorr(float q) const; float GetLowQForRadialInt_recipA() const; float GetHighQForRadialInt_recipA() const; @@ -207,6 +209,7 @@ public: bool GetApplyPixelMaskInFPGA() const; float GetPixelSize_mm() const; bool GetBinning2x2() const; + bool GetSolidAngleCorrection() const; std::string GetSourceName() const; std::string GetSourceNameShort() const; diff --git a/grpc/jfjoch.proto b/grpc/jfjoch.proto index e4a32d0d..dbf2290b 100644 --- a/grpc/jfjoch.proto +++ b/grpc/jfjoch.proto @@ -100,6 +100,7 @@ message DatasetSettings { bool apply_pixel_mask = 16; bool binning2x2 = 17; + bool rad_int_solid_angle_corr = 18; } message DetectorSettings { diff --git a/image_analysis/RadialIntegrationProfile.cpp b/image_analysis/RadialIntegrationProfile.cpp index 7b3c654a..46bc6dbe 100644 --- a/image_analysis/RadialIntegrationProfile.cpp +++ b/image_analysis/RadialIntegrationProfile.cpp @@ -23,19 +23,24 @@ void RadialIntegrationProfile::Add(const std::vector &in_sum, const std throw JFJochException(JFJochExceptionCategory::InputParameterInvalid, "Mismatch in size of sum/count datasets"); } -std::vector RadialIntegrationProfile::GetResult() const { +std::vector RadialIntegrationProfile::GetResult(const DiffractionExperiment &experiment) const { std::vector rad_int_profile(sum.size(), 0); for (int i = 0; i < sum.size(); i++) { + float tmp = 0; if (count[i] > 0) - rad_int_profile[i] = static_cast(sum[i]) / static_cast(count[i]); + tmp = static_cast(sum[i]) / static_cast(count[i]); + if (experiment.GetSolidAngleCorrection()) + tmp /= experiment.CalcRadIntSolidAngleCorr(bin_to_q[i]); + rad_int_profile[i] = tmp; } return rad_int_profile; } -void RadialIntegrationProfile::GetPlot(JFJochProtoBuf::Plot &plot) const { + +void RadialIntegrationProfile::GetPlot(JFJochProtoBuf::Plot &plot, const DiffractionExperiment &experiment) const { std::unique_lock ul(m); - std::vector rad_int_profile = GetResult(); + std::vector rad_int_profile = GetResult(experiment); *plot.mutable_x() = {bin_to_q.begin(), bin_to_q.end()}; *plot.mutable_y() = {rad_int_profile.begin(), rad_int_profile.end()}; diff --git a/image_analysis/RadialIntegrationProfile.h b/image_analysis/RadialIntegrationProfile.h index 0961345f..4a74faf7 100644 --- a/image_analysis/RadialIntegrationProfile.h +++ b/image_analysis/RadialIntegrationProfile.h @@ -18,8 +18,8 @@ class RadialIntegrationProfile { public: explicit RadialIntegrationProfile(RadialIntegrationMapping &mapping); void Add(const std::vector &sum, const std::vector &count); - std::vector GetResult() const; - void GetPlot(JFJochProtoBuf::Plot &plot) const; + std::vector GetResult(const DiffractionExperiment &experiment) const; + void GetPlot(JFJochProtoBuf::Plot &plot, const DiffractionExperiment &experiment) const; }; #endif //JUNGFRAUJOCH_RADIALINTEGRATIONPROFILE_H diff --git a/python/jfjoch_pb2.py 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_GRPC_JFJOCHDETECTOR._serialized_start=9973 + _GRPC_JFJOCHDETECTOR._serialized_end=10359 + _GRPC_JFJOCHBROKER._serialized_start=10362 + _GRPC_JFJOCHBROKER._serialized_end=11951 # @@protoc_insertion_point(module_scope) diff --git a/receiver/JFJochReceiver.cpp b/receiver/JFJochReceiver.cpp index ffc30349..c7f4ff7e 100644 --- a/receiver/JFJochReceiver.cpp +++ b/receiver/JFJochReceiver.cpp @@ -588,9 +588,11 @@ void JFJochReceiver::FinalizeMeasurement() { message.write_master_file = true; if (rad_int_profile) - message.rad_int_result["dataset"] = rad_int_profile->GetResult(); + message.rad_int_result["dataset"] + = rad_int_profile->GetResult(experiment); for (int i = 0; i < rad_int_profile_per_file.size(); i++) - message.rad_int_result["file" + std::to_string(i)] = rad_int_profile_per_file[i]->GetResult(); + message.rad_int_result["file" + std::to_string(i)] + = rad_int_profile_per_file[i]->GetResult(experiment); image_pusher.EndDataCollection(message); logger.Info("Disconnected from writers"); @@ -646,10 +648,10 @@ JFJochProtoBuf::Plot JFJochReceiver::GetPlots(const JFJochProtoBuf::PlotRequest case JFJochProtoBuf::RAD_INT: if (request.has_file_number()) { if (request.file_number() < rad_int_profile_per_file.size()) - rad_int_profile_per_file[request.file_number()]->GetPlot(ret); + rad_int_profile_per_file[request.file_number()]->GetPlot(ret, experiment); } else { if (rad_int_profile) - rad_int_profile->GetPlot(ret); + rad_int_profile->GetPlot(ret, experiment); } break; case JFJochProtoBuf::SPOT_COUNT: diff --git a/tests/DiffractionExperimentTest.cpp b/tests/DiffractionExperimentTest.cpp index dd1ed4e6..63530adf 100644 --- a/tests/DiffractionExperimentTest.cpp +++ b/tests/DiffractionExperimentTest.cpp @@ -967,4 +967,17 @@ TEST_CASE("DiffractionExperiment_DetectorModuleHostname","[DiffractionExperiment REQUIRE(h == h_out); REQUIRE_NOTHROW(det_cfg = x.DetectorConfig(net_cfg)); -} \ No newline at end of file +} + +TEST_CASE("DiffractionExperiment_SolidAngleCorrection","[DiffractionExperiment]") { + DiffractionExperiment x; + x.PhotonEnergy_keV(WVL_1A_IN_KEV); + x.RadIntSolidAngleCorr(false); + + REQUIRE (x.CalcRadIntSolidAngleCorr(0.0) == 1.0f); + REQUIRE (x.CalcRadIntSolidAngleCorr(1.0) == 1.0f); + + x.RadIntSolidAngleCorr(true); + REQUIRE(x.CalcRadIntSolidAngleCorr(0.0) == 1.0f); + REQUIRE(x.CalcRadIntSolidAngleCorr(2*M_PI) == Approx(0.5f*0.5f*0.5f)); +} diff --git a/tests/HDF5WritingTest.cpp b/tests/HDF5WritingTest.cpp index d115a8c0..6c6a6700 100644 --- a/tests/HDF5WritingTest.cpp +++ b/tests/HDF5WritingTest.cpp @@ -155,8 +155,8 @@ TEST_CASE("HDF5MasterFile_RadInt", "[HDF5][Full]") { start_message.rad_int_bin_to_q = mapping.GetBinToQ(); EndMessage end_message; end_message.number_of_images = x.GetImageNum(); - end_message.rad_int_result["avg1"] = profile.GetResult(); - end_message.rad_int_result["avg2"] = profile.GetResult(); + end_message.rad_int_result["avg1"] = profile.GetResult(x); + end_message.rad_int_result["avg2"] = profile.GetResult(x); REQUIRE_NOTHROW(HDF5Metadata::NXmx(start_message, end_message)); } diff --git a/tests/RadialIntegrationTest.cpp b/tests/RadialIntegrationTest.cpp index f3189756..f361efea 100644 --- a/tests/RadialIntegrationTest.cpp +++ b/tests/RadialIntegrationTest.cpp @@ -100,7 +100,7 @@ TEST_CASE("RadialIntegrationProfile","[RadialIntegration]") { REQUIRE_THROWS(profile.Add(sum_wr, count)); JFJochProtoBuf::Plot plot; - profile.GetPlot(plot); + profile.GetPlot(plot, x); REQUIRE(plot.x_size() == mapping.GetBinNumber()); REQUIRE(plot.y_size() == mapping.GetBinNumber());