Move the atomic-model code to image_analysis/structure_refinement/ and WriteModel to writer/

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A pure move. ModelValidation, RigidBodyRefine, RigidBodyGPU, ModelFFT, ModelGrid,
ModelScaling, ModelMaskGPU, ModelScaleGPU and SigmaA - everything that works on an
atomic model - become the JFJochStructureRefinement library, linked by
JFJochImageAnalysis. WriteModel (the placed-model mmCIF/PDB writer) goes to writer/
as its own small JFJochModelWriter target, so JFJochWriter, which a writer-only build
compiles, does not gain a gemmi dependency. Only include paths and CMake lists change.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SVmAWnzCmRKAXVUCdc4iNi

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leonarski_f

2026-10-07 14:05:37 +02:00

co-authored by Claude Opus 5.5

parent 08ca1d5764

commit 9ad92b6bfe

34 changed files with 73 additions and 69 deletions

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image_analysis/structure_refinement/ModelValidation.cpp

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