v1.0.0-rc.104 (#9)

This is an UNSTABLE release.

jfjoch_writer: Fix and improve the way grid scan geometry is saved (non-NXmx extension makes it way easier)
jfjoch_viewer: Display grid scan results in 2D (work in progress)
jfjoch_viewer: Improve auto-scaling on start of images (work in progress)
jfjoch_viewer: Add B-factor and resolution estimate to the dataset info plots

Reviewed-on: #9
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>

tests/GridScanSettingsTest.cpp

@@ -420,3 +420,116 @@ TEST_CASE("GridScanSettings::Rearrange functionality tests", "[gridscan][rearran
         }
     }
 }
+
+TEST_CASE("GridScanSettings GetXContainer_m", "[GridScanSettings][container]") {
+    // Standard horizontal scan, step +2um X, +3um Y, 4 fast, 3 slow (12 total)
+    GridScanSettings grid_horiz(4, 2.0f, 3.0f, false, false);
+    grid_horiz.ImageNum(12); // 3 rows of 4
+
+    auto x_m = grid_horiz.GetXContainer_m(12);
+
+    REQUIRE(x_m.size() == 12);
+
+    // 0..3 should be X=0,2,4,6 um, Y=0
+    REQUIRE(x_m[0] == Catch::Approx(0.0));
+    REQUIRE(x_m[1] == Catch::Approx(2.0e-6));
+    REQUIRE(x_m[2] == Catch::Approx(4.0e-6));
+    REQUIRE(x_m[3] == Catch::Approx(6.0e-6));
+
+    // 4..7 should be X=0,2,4,6 um, Y=3 um
+    REQUIRE(x_m[4] == Catch::Approx(0.0));
+    REQUIRE(x_m[7] == Catch::Approx(6.0e-6));
+
+    // Last row
+    REQUIRE(x_m[8] == Catch::Approx(0.0));
+    REQUIRE(x_m[11] == Catch::Approx(6.0e-6));
+
+    // Snake raster test (horizontal, 3x2, fast +1um, slow +10um)
+    GridScanSettings grid_snake(3, 1.0f, 10.0f, true, false);
+    grid_snake.ImageNum(6); // 2 rows of 3
+    auto x_snake = grid_snake.GetXContainer_m(6);
+    // 0,1,2: left-to-right, 3,4,5: right-to-left
+    REQUIRE(x_snake[0] == Catch::Approx(0.0e-6));
+    REQUIRE(x_snake[1] == Catch::Approx(1.0e-6));
+    REQUIRE(x_snake[2] == Catch::Approx(2.0e-6));
+    REQUIRE(x_snake[3] == Catch::Approx(2.0e-6));
+    REQUIRE(x_snake[4] == Catch::Approx(1.0e-6));
+    REQUIRE(x_snake[5] == Catch::Approx(0.0e-6));
+
+    // Vertical scan, step X = 20um, fast Y = 5um, 2 fast, 3 slow (6 total)
+    GridScanSettings grid_vert(3, 20.0f, 5.0f, false, true);
+    grid_vert.ImageNum(6); // 2 columns, 3 rows (vertical fast)
+    auto x_vert = grid_vert.GetXContainer_m(6);
+    // First col: X=0, Y=0,5,10
+    REQUIRE(x_vert[0] == Catch::Approx(0.0));
+    REQUIRE(x_vert[1] == Catch::Approx(0.0));
+    REQUIRE(x_vert[2] == Catch::Approx(0.0));
+    // Second col: X=20um, Y=0,5,10
+    REQUIRE(x_vert[3] == Catch::Approx(20.0e-6));
+    REQUIRE(x_vert[5] == Catch::Approx(20.0e-6));
+
+    // Negative steps test
+    GridScanSettings grid_neg(3, -2.0f, -7.5f, false, false);
+    grid_neg.ImageNum(6); // 2 rows of 3
+    auto x_neg = grid_neg.GetXContainer_m(6);
+    REQUIRE(x_neg[0] == Catch::Approx(4.0e-6)); // 2*(3-1)
+    REQUIRE(x_neg[1] == Catch::Approx(2.0e-6));
+    REQUIRE(x_neg[2] == Catch::Approx(0.0));
+}
+
+
+TEST_CASE("GridScanSettings GetYContainer_m", "[GridScanSettings][container]") {
+    // Standard horizontal scan, step +2um X, +3um Y, 4 fast, 3 slow (12 total)
+    GridScanSettings grid_horiz(4, 2.0f, 3.0f, false, false);
+    grid_horiz.ImageNum(12); // 3 rows of 4
+
+    auto y_m = grid_horiz.GetYContainer_m(12);
+
+    REQUIRE(y_m.size() == 12);
+
+    for (int i = 0; i < 4; ++i)
+        REQUIRE(y_m[i] == Catch::Approx(0.0));
+
+    // 4..7 should be X=0,2,4,6 um, Y=3 um
+    REQUIRE(y_m[4] == Catch::Approx(3.0e-6));
+    REQUIRE(y_m[7] == Catch::Approx(3.0e-6));
+
+    // Last row
+    REQUIRE(y_m[8] == Catch::Approx(6.0e-6));
+    REQUIRE(y_m[11] == Catch::Approx(6.0e-6));
+
+    // Snake raster test (horizontal, 3x2, fast +1um, slow +10um)
+    GridScanSettings grid_snake(3, 1.0f, 10.0f, true, false);
+    grid_snake.ImageNum(6); // 2 rows of
+    auto y_snake = grid_snake.GetYContainer_m(6);
+    // 0,1,2: left-to-right, 3,4,5: right-to-left
+
+    // Both rows Y
+    for (int i = 0; i < 3; ++i)
+        REQUIRE(y_snake[i] == Catch::Approx(0.0));
+    for (int i = 3; i < 6; ++i)
+        REQUIRE(y_snake[i] == Catch::Approx(10.0e-6));
+
+    // Vertical scan, step X = 20um, fast Y = 5um, 2 fast, 3 slow (6 total)
+    GridScanSettings grid_vert(3, 20.0f, 5.0f, false, true);
+    grid_vert.ImageNum(6); // 2 columns, 3 rows (vertical fast)
+    auto y_vert = grid_vert.GetYContainer_m(6);
+    // First col: X=0, Y=0,5,10
+    REQUIRE(y_vert[0] == Catch::Approx(0.0));
+    REQUIRE(y_vert[1] == Catch::Approx(5.0e-6));
+    REQUIRE(y_vert[2] == Catch::Approx(10.0e-6));
+    // Second col: X=20um, Y=0,5,10
+    REQUIRE(y_vert[3] == Catch::Approx(0.0));
+    REQUIRE(y_vert[5] == Catch::Approx(10.0e-6));
+
+    // Negative steps test
+    GridScanSettings grid_neg(3, -2.0f, -7.5f, false, false);
+    grid_neg.ImageNum(6); // 2 rows of 3
+    auto y_neg = grid_neg.GetYContainer_m(6);
+    REQUIRE(y_neg[0] == Catch::Approx(7.5e-6));
+    REQUIRE(y_neg[1] == Catch::Approx(7.5e-6));
+    REQUIRE(y_neg[2] == Catch::Approx(7.5e-6));
+    REQUIRE(y_neg[3] == Catch::Approx(0.0));
+    REQUIRE(y_neg[4] == Catch::Approx(0.0));
+    REQUIRE(y_neg[5] == Catch::Approx(0.0));
+}