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Improve release/versioning of Jungfraujoch repository

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leonarski_f
2024-05-15 11:29:01 +02:00
parent 3693cae440
commit 91fd44bff7
282 changed files with 17360 additions and 27117 deletions
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tests/JFJochReceiverProcessingTest.cpp
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@@ -1,6 +1,6 @@
// Copyright (2019-2024) Paul Scherrer Institute
#include <catch2/catch.hpp>
#include <catch2/catch_all.hpp>
#include <fstream>
@@ -188,73 +188,6 @@ TEST_CASE("GenerateResolutionMap") {
experiment.GetYPixelsNum(), 4);
}
TEST_CASE("JFJochIntegrationTest_ZMQ_lysozyme_resolution", "[JFJochReceiver]") {
Logger logger("JFJochIntegrationTest_ZMQ_lysozyme_resolution");
RegisterHDF5Filter();
const uint16_t nthreads = 4;
DiffractionExperiment experiment(DetectorGeometry(8,2,8,36));
experiment.ImagesPerTrigger(5).NumTriggers(1).UseInternalPacketGenerator(true)
.FilePrefix("lyso_test_resolution").ConversionOnFPGA(false)
.DetectorDistance_mm(75).BeamY_pxl(1136).BeamX_pxl(1090).PhotonEnergy_keV(12.4)
.SetUnitCell(UnitCell{.a = 36.9, .b = 78.95, .c = 78.95, .alpha =90, .beta = 90, .gamma = 90})
.NeuralNetModelPath("../../resonet/traced_resnet_model.pt");
// Load example image
HDF5ReadOnlyFile data("../../tests/test_data/compression_benchmark.h5");
HDF5DataSet dataset(data, "/entry/data/data");
HDF5DataSpace file_space(dataset);
REQUIRE(file_space.GetDimensions()[2] == experiment.GetXPixelsNum());
REQUIRE(file_space.GetDimensions()[1] == experiment.GetYPixelsNum());
std::vector<int16_t> image_conv (file_space.GetDimensions()[1] * file_space.GetDimensions()[2]);
std::vector<hsize_t> start = {4,0,0};
std::vector<hsize_t> file_size = {1, file_space.GetDimensions()[1], file_space.GetDimensions()[2]};
dataset.ReadVector(image_conv, start, file_size);
std::vector<int16_t> image_raw_geom(experiment.GetModulesNum() * RAW_MODULE_SIZE);
ConvertedToRawGeometry(experiment, image_raw_geom.data(), image_conv.data());
logger.Info("Loaded image");
// Setup acquisition device
AcquisitionDeviceGroup aq_devices;
std::unique_ptr<HLSSimulatedDevice> test = std::make_unique<HLSSimulatedDevice>(0, 64);
for (int m = 0; m < experiment.GetModulesNum(); m++)
test->SetInternalGeneratorFrame((uint16_t *) image_raw_geom.data() + m * RAW_MODULE_SIZE, m);
aq_devices.Add(std::move(test));
ZMQContext context;
ZMQStream2Pusher pusher(context, "ipc://*");
StreamWriter writer(context, logger, pusher.GetAddress());
auto writer_future = std::async(std::launch::async, &StreamWriter::Run, &writer);
context.NumThreads(4);
JFJochReceiverService service(aq_devices, logger, pusher);
service.NumThreads(nthreads);
SpotFindingSettings settings = DiffractionExperiment::DefaultDataProcessingSettings();
settings.signal_to_noise_threshold = 2.5;
settings.photon_count_threshold = 5;
settings.min_pix_per_spot = 1;
settings.max_pix_per_spot = 200;
service.SetSpotFindingSettings(settings);
service.Start(experiment, nullptr);
auto receiver_out = service.Stop();
CHECK(receiver_out.efficiency == 1.0);
CHECK(receiver_out.status.indexing_rate == 1.0);
CHECK(receiver_out.status.images_sent == experiment.GetImageNum());
CHECK(!receiver_out.status.cancelled);
REQUIRE_NOTHROW(writer_future.get());
}
TEST_CASE("JFJochIntegrationTest_ZMQ_ROI", "[JFJochReceiver]") {
Logger logger("JFJochIntegrationTest_ZMQ_ROI");