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HDF5DataFile: Save radial integration result

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This commit is contained in:
leonarski_f
2023-05-06 12:13:22 +02:00
parent 116fb8091b
commit 70a10c594c
4 changed files with 69 additions and 13 deletions
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33
writer/HDF5DataFile.cpp
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@@ -5,9 +5,10 @@
#include "../compression/JFJochCompressor.h"
HDF5DataFile::HDF5DataFile(const std::string &in_filename, int64_t width, int64_t height,
int64_t pixel_depth_byte, bool is_signed, CompressionAlgorithm compression,
int64_t pixel_depth_byte, bool is_signed, const std::vector<float>& in_rad_int_bin_to_q,
CompressionAlgorithm compression,
size_t in_max_spots) : data_type(pixel_depth_byte, is_signed),
max_spots(in_max_spots) {
max_spots(in_max_spots), rad_int_bin_to_q(in_rad_int_bin_to_q) {
max_image_number = 0;
nimages = 0;
@@ -27,14 +28,17 @@ HDF5DataFile::~HDF5DataFile() {
data_set.reset();
if (!spot_count.empty()) {
HDF5Group group(*data_file, "/entry/result");
group.NXClass("NXcollection");
std::vector<hsize_t> dims = {spot_count.size(), max_spots};
group.SaveVector("nPeaks", spot_count);
group.SaveVector("peakXPosRaw", spot_x, dims, CompressionAlgorithm::BSHUF_LZ4);
group.SaveVector("peakYPosRaw", spot_y, dims, CompressionAlgorithm::BSHUF_LZ4);
group.SaveVector("peakTotalIntensity", spot_intensity, dims, CompressionAlgorithm::BSHUF_LZ4);
group.SaveVector("indexingResult", indexing_result);
result_group->SaveVector("nPeaks", spot_count);
result_group->SaveVector("peakXPosRaw", spot_x, dims, CompressionAlgorithm::BSHUF_LZ4);
result_group->SaveVector("peakYPosRaw", spot_y, dims, CompressionAlgorithm::BSHUF_LZ4);
result_group->SaveVector("peakTotalIntensity", spot_intensity, dims, CompressionAlgorithm::BSHUF_LZ4);
result_group->SaveVector("indexingResult", indexing_result);
if (!rad_int_bin_to_q.empty())
rad_int_group->SaveVector("bin_to_q", rad_int_bin_to_q);
if (!rad_int_file_avg.empty() && (rad_int_file_avg.size() == rad_int_bin_to_q.size()))
rad_int_group->SaveVector("file_avg", rad_int_file_avg);
HDF5Group group_exp(*data_file, "/entry/jungfrau");
group_exp.NXClass("NXcollection");
@@ -42,7 +46,8 @@ HDF5DataFile::~HDF5DataFile() {
group_exp.SaveVector("info", jf_info);
group_exp.SaveVector("timestamp", timestamp);
}
rad_int_group.reset();
result_group.reset();
data_file.reset();
}
@@ -51,6 +56,11 @@ void HDF5DataFile::CreateFile() {
HDF5Group(*data_file, "/entry").NXClass("NXentry");
HDF5Group(*data_file, "/entry/data").NXClass("NXdata");
result_group = std::make_unique<HDF5Group>(*data_file, "/entry/result");
result_group->NXClass("NXcollection");
rad_int_group = std::make_unique<HDF5Group>(*data_file, "/entry/result/rad_int");
HDF5DataSpace data_space({1, ypixel, xpixel},{H5S_UNLIMITED, ypixel, xpixel});
data_set = std::make_unique<HDF5DataSet>(*data_file, "/entry/data/data", data_type, data_space, dcpl);
@@ -99,6 +109,9 @@ void HDF5DataFile::Write(const DataMessage &msg, uint64_t image_number) {
bunch_id[image_number] = msg.bunch_id;
jf_info[image_number] = msg.jf_info;
timestamp[image_number] = msg.timestamp;
if (!msg.rad_int_profile.empty() && (msg.rad_int_profile.size() == rad_int_bin_to_q.size()))
rad_int_group->SaveVector("img" + std::to_string(image_number), msg.rad_int_profile);
}
HDF5DataFileStatistics HDF5DataFile::GetStatistics() const {