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HDF5DataFile: Save radial integration result

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This commit is contained in:
leonarski_f
2023-05-06 12:13:22 +02:00
parent 116fb8091b
commit 70a10c594c
4 changed files with 69 additions and 13 deletions
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tests/HDF5WritingTest.cpp
+36 -2
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@@ -3,13 +3,13 @@
#include <catch2/catch.hpp>
#include <iostream>
#include <bitshuffle/bitshuffle.h>
#include "../common/DiffractionExperiment.h"
#include "../writer/HDF5Objects.h"
#include "../writer/HDF5Writer.h"
#include "../writer/HDF5NXmx.h"
#include "../compression/JFJochCompressor.h"
#include "../image_analysis/RadialIntegrationProfile.h"
using namespace std::literals::chrono_literals;
@@ -195,6 +195,41 @@ TEST_CASE("HDF5Writer_Spots", "[HDF5][Full]") {
REQUIRE (H5Fget_obj_count(H5F_OBJ_ALL, H5F_OBJ_ALL) == 0);
}
TEST_CASE("HDF5Writer_Rad_Int_Profile", "[HDF5][Full]") {
{
RegisterHDF5Filter();
DiffractionExperiment x(DetectorGeometry(8, 2, 8, 36));
x.DetectorDistance_mm(50).BeamX_pxl(1000).BeamY_pxl(1000);
x.QSpacingForRadialInt_recipA(0.1).LowQForRadialInt_recipA(0.1).HighQForRadialInt_recipA(4);
RadialIntegrationMapping mapping(x);
RadialIntegrationProfile profile(mapping);
std::vector<float> rad_int_profile(mapping.GetBinNumber(), 4.0);
std::vector<float> rad_int_avg(mapping.GetBinNumber(), 0.33);
x.FilePrefix("test02_1p10_spots").ImagesPerTrigger(5).DataFileCount(2).Compression(JFJochProtoBuf::NO_COMPRESSION);
StartMessage start_message;
x.FillMessage(start_message);
start_message.rad_int_bin_to_q = mapping.GetBinToQ();
HDF5Writer file_set(start_message);
std::vector<uint16_t> image(x.GetPixelsNum());
for (int i = 0; i < x.GetImageNum(); i++) {
DataMessage message{};
message.image.data = (uint8_t *) image.data();
message.image.size = x.GetPixelsNum() * x.GetPixelDepth();
message.rad_int_profile = std::vector<float>(mapping.GetBinNumber(), i);
message.number = i;
REQUIRE_NOTHROW(file_set.Write(message));
}
}
// No leftover HDF5 objects
REQUIRE (H5Fget_obj_count(H5F_OBJ_ALL, H5F_OBJ_ALL) == 0);
}
TEST_CASE("HDF5Writer_VDS", "[HDF5][Full]") {
DiffractionExperiment x(DetectorGeometry(1));
@@ -345,7 +380,6 @@ TEST_CASE("HDF5Objects_ExtractFilename", "[HDF5]") {
REQUIRE(ExtractFilename("dir1/dir2/filename_data_000001.h5") == "filename_data_000001.h5");
}
TEST_CASE("HDF5DataType", "[HDF5]") {
HDF5DataType type1(1,true);
REQUIRE(type1.GetElemSize() == 1);