image analysis: two per-image detection scores say whether there is protein and whether there is ice

proteinScore and iceScore are saturating scores in [0,1] that answer presence, not quality: a superb
crystal and a barely-diffracting one both read near 1, and neither the spot count nor the resolution
enters either of them as a term. iceRingScore already reports a magnitude - a ratio, unbounded - which
is not a number that can be thresholded; these are.

The protein score counts distinct d SHELLS above 5 A rather than spots, so a parasitic ring in the
low-resolution band cannot accumulate evidence, and weights each spot against the frame's own median
so a scattering of the weakest detections cannot fill a shell either. The ice score carries two
channels and takes the stronger: a radial one over the azimuthal profile, which runs the hexagonal
and the CUBIC phase as separate hypotheses and decides between them at the end (flash-cooled loops
show cubic or stacking-disordered ice at least as often as hexagonal, the two share only three
lines, and dropping the cubic hypothesis costs about 5 pp on iced loops), and a spot one that reads
an excess on the ice radii against the same band slid to every ice-free offset, which is what
catches ice arriving as discrete crystallites and leaving the radial profile flat.

Both read d out of the geometry, so both move with a beam-centre error; the centre is not fitted
here, and the one they were computed with is written beside them as scoreBeamCenterX/Y so a later
rescoring can tell an algorithm disagreement from a geometry one.

Ported from validated prototypes and checked against them frame by frame on stored data: mean
absolute difference 2.7e-5 (protein), 1.3e-8 (ice radial) and 3.4e-4 (ice spots). On a 41-loop
battery the protein score reaches 98.4% of confirmed-protein frames and 0.00% of water frames, and
finds no cluster on any water or ice raster. Cost is 0.01 ms/frame for the protein score and
0.08-0.32 ms/frame for the ice score.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01EFEJG6WBQv8th4UJFNe53N
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leonarski_fandClaude Opus 5 committed 2026-09-07 23:59:46 +02:00
1 parent 680c36c20d
commit 62ca2b24f6
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@@ -820,6 +820,10 @@ namespace {
message.bkg_estimate = GetCBORFloat(value);
else if (key == "ice_ring_score")
message.ice_ring_score = GetCBORFloat(value);
else if (key == "protein_score")
message.protein_score = GetCBORFloat(value);
else if (key == "ice_score")
message.ice_score = GetCBORFloat(value);
else if (key == "adu_histogram")
GetCBORUInt64Array(value, message.adu_histogram);
else if (key == "beam_corr_x")
@@ -1493,6 +1497,14 @@ namespace {
GetCBORUInt8Array(value, message.image_indexed);
else if (key == "v_bkg_estimate")
GetCBORFloatArray(value, message.v_bkg_estimate);
else if (key == "v_protein_score")
GetCBORFloatArray(value, message.v_protein_score);
else if (key == "v_ice_score")
GetCBORFloatArray(value, message.v_ice_score);
else if (key == "protein_score")
message.protein_score = GetCBORFloat(value);
else if (key == "ice_score")
message.ice_score = GetCBORFloat(value);
else if (key == "ice_ring_score")
GetCBORFloatArray(value, message.ice_ring_score);
else if (key == "spot_count_ice_control")