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Updates March 2023

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This commit is contained in:
leonarski_f
2024-03-14 20:26:03 +01:00
parent affb8d1380
commit 59aacf516d
59 changed files with 1637 additions and 792 deletions
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receiver/JFJochReceiverTest.cpp
+17 -60
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@@ -7,38 +7,6 @@
#define STORAGE_CELL_FOR_TEST 11
JFJochReceiverOutput RunJFJochReceiverTest(AcquisitionDeviceGroup &aq_devices, ImagePusher &pusher,
const DiffractionExperiment &x,
Logger &logger, JFCalibration &calib,
uint16_t nthreads, bool abort,
ZMQStream2PreviewPublisher *in_preview_writer,
const std::string &numa_policy) {
ZMQContext context;
context.NumThreads(4);
JFJochReceiverService service(aq_devices, logger, pusher);
service.PreviewPublisher(in_preview_writer).NumThreads(nthreads).NUMAPolicy(numa_policy);
SpotFindingSettings settings = DiffractionExperiment::DefaultDataProcessingSettings();
settings.signal_to_noise_threshold = 2.5;
settings.photon_count_threshold = 5;
settings.min_pix_per_spot = 1;
settings.max_pix_per_spot = 200;
service.SetSpotFindingSettings(settings);
service.Start(x, &calib);
if (x.GetImageNum() > 0) {
// Initial communication
if (abort) {
std::this_thread::sleep_for(std::chrono::seconds(60));
service.Cancel(false);
}
}
return service.Stop();
}
static JFCalibration GeneratePedestalCalibration(const DiffractionExperiment &x) {
JFCalibration ret(x);
@@ -66,7 +34,7 @@ static JFCalibration GeneratePedestalCalibration(const DiffractionExperiment &x)
bool JFJochReceiverTest(JFJochReceiverOutput &output, Logger &logger,
AcquisitionDeviceGroup &aq_devices, const DiffractionExperiment &x,
uint16_t nthreads, bool abort,
uint16_t nthreads,
ZMQStream2PreviewPublisher *in_preview_writer,
const std::string &numa_policy) {
@@ -75,38 +43,16 @@ bool JFJochReceiverTest(JFJochReceiverOutput &output, Logger &logger,
for (int i = 0; i < raw_expected_image.size(); i++)
raw_expected_image[i] = i % 65536;
return JFJochReceiverTest(output, logger, aq_devices, x,
raw_expected_image, nthreads, abort,
in_preview_writer, numa_policy);
return JFJochReceiverTest(output, logger, aq_devices, x, raw_expected_image, nthreads, in_preview_writer, numa_policy);
}
bool JFJochReceiverTest(JFJochReceiverOutput &output, Logger &logger,
AcquisitionDeviceGroup &aq_devices, const DiffractionExperiment &x,
const std::vector<uint16_t> &raw_expected_image,
uint16_t nthreads, bool abort,
uint16_t nthreads,
ZMQStream2PreviewPublisher *in_preview_writer,
const std::string &numa_policy) {
if (raw_expected_image.size() != RAW_MODULE_SIZE * x.GetModulesNum())
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
"Size of input array with raw expected image is wrong");
for (int i = 0; i < x.GetDataStreamsNum(); i++) {
uint32_t module0 = x.GetFirstModuleOfDataStream(i);
if (x.GetDetectorSetup().GetDetectorType() == DetectorType::JUNGFRAU) {
for (int m = 0; m < x.GetModulesNum(i); m++)
aq_devices[i].SetInternalGeneratorFrame(raw_expected_image.data() + (module0 + m) * RAW_MODULE_SIZE, m);
} else if (x.GetDetectorSetup().GetDetectorType() == DetectorType::EIGER) {
std::vector<uint16_t> tmp(RAW_MODULE_SIZE);
for (int m = 0; m < x.GetModulesNum(i); m++) {
RawToEigerInput(tmp.data(), raw_expected_image.data() + (module0 + m) * RAW_MODULE_SIZE);
aq_devices[i].SetInternalGeneratorFrame(tmp.data(), m);
}
} else
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid, "Detector not supported");
}
JFCalibration calib = GeneratePedestalCalibration(x);
int64_t image_number = x.GetImageNum() - 1;
@@ -118,12 +64,23 @@ bool JFJochReceiverTest(JFJochReceiverOutput &output, Logger &logger,
TestImagePusher pusher(image_number);
output = RunJFJochReceiverTest(aq_devices, pusher, x, logger, calib, nthreads, abort,
in_preview_writer, numa_policy);
JFJochReceiverService service(aq_devices, logger, pusher);
service.PreviewPublisher(in_preview_writer).NumThreads(nthreads).NUMAPolicy(numa_policy);
service.LoadInternalGeneratorImage(x, raw_expected_image, 0);
SpotFindingSettings settings = DiffractionExperiment::DefaultDataProcessingSettings();
settings.signal_to_noise_threshold = 2.5;
settings.photon_count_threshold = 5;
settings.min_pix_per_spot = 1;
settings.max_pix_per_spot = 200;
service.SetSpotFindingSettings(settings);
service.Start(x, &calib);
output = service.Stop();
bool no_errors = true;
if ((x.GetImageNum() > 0) && (!abort)) {
if (x.GetImageNum() > 0) {
no_errors = pusher.CheckImage(x, raw_expected_image, calib, logger);
if (output.efficiency != 1.0) {