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jfjoch_writer: Handle writing properly when not indexing

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leonarski_f
2025-11-23 12:56:18 +01:00
parent ff3596a639
commit 35bdc425ac
1 changed files with 15 additions and 11 deletions
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26
writer/HDF5DataFilePluginMX.cpp
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@@ -114,13 +114,14 @@ void HDF5DataFilePluginMX::Write(const DataMessage &msg, uint64_t image_number)
spot_x[max_spots * image_number + i] = msg.spots[i].x;
spot_y[max_spots * image_number + i] = msg.spots[i].y;
spot_int[max_spots * image_number + i] = msg.spots[i].intensity;
if (indexing)
if (indexing) {
spot_indexed[max_spots * image_number + i] = msg.spots[i].indexed;
spot_ice_ring[max_spots * image_number + i] = msg.spots[i].ice_ring;
spot_h[max_spots * image_number + i] = msg.spots[i].h;
spot_k[max_spots * image_number + i] = msg.spots[i].k;
spot_l[max_spots * image_number + i] = msg.spots[i].l;
spot_h[max_spots * image_number + i] = msg.spots[i].h;
spot_k[max_spots * image_number + i] = msg.spots[i].k;
spot_l[max_spots * image_number + i] = msg.spots[i].l;
spot_dist_ewald[max_spots * image_number + i] = msg.spots[i].dist_ewald_sphere;
}
spot_ice_ring[max_spots * image_number + i] = msg.spots[i].ice_ring;
}
npeaks[image_number] = spot_cnt;
@@ -165,17 +166,20 @@ void HDF5DataFilePluginMX::WriteFinal(HDF5File &data_file) {
data_file.SaveVector("/entry/MX/peakXPosRaw", spot_x, {(hsize_t) (max_image_number + 1), max_spots});
data_file.SaveVector("/entry/MX/peakYPosRaw", spot_y, {(hsize_t) (max_image_number + 1), max_spots});
data_file.SaveVector("/entry/MX/peakTotalIntensity", spot_int, {(hsize_t) (max_image_number + 1), max_spots});
data_file.SaveVector("/entry/MX/peakIndexed", spot_indexed, {(hsize_t) (max_image_number + 1), max_spots});
data_file.SaveVector("/entry/MX/peakIceRingRes", spot_ice_ring, {(hsize_t) (max_image_number + 1), max_spots});
data_file.SaveVector("/entry/MX/nPeaks", npeaks.vec());
data_file.SaveVector("/entry/MX/peakH", spot_h, {(hsize_t) (max_image_number + 1), max_spots});
data_file.SaveVector("/entry/MX/peakK", spot_k, {(hsize_t) (max_image_number + 1), max_spots});
data_file.SaveVector("/entry/MX/peakL", spot_l, {(hsize_t) (max_image_number + 1), max_spots});
data_file.SaveVector("/entry/MX/peakDistEwaldSphere", spot_dist_ewald,
{(hsize_t) (max_image_number + 1), max_spots});
if (indexing) {
data_file.SaveVector("/entry/MX/peakH", spot_h, {(hsize_t) (max_image_number + 1), max_spots});
data_file.SaveVector("/entry/MX/peakK", spot_k, {(hsize_t) (max_image_number + 1), max_spots});
data_file.SaveVector("/entry/MX/peakL", spot_l, {(hsize_t) (max_image_number + 1), max_spots});
data_file.SaveVector("/entry/MX/peakDistEwaldSphere", spot_dist_ewald,
{(hsize_t) (max_image_number + 1), max_spots});
data_file.SaveVector("/entry/MX/peakIndexed", spot_indexed, {(hsize_t) (max_image_number + 1), max_spots});
}
}
if (!strong_pixel_count.empty())
data_file.SaveVector("/entry/MX/strongPixels", strong_pixel_count.vec());