jfjoch_writer: Reserve all metadata vectors when opening file
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@@ -5,10 +5,9 @@
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#include "../include/spdlog/fmt/fmt.h"
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#include "../common/Reflection.h"
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void HDF5DataFilePluginReflection::OpenFile(HDF5File &data_file, const DataMessage &msg) {
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void HDF5DataFilePluginReflection::OpenFile(HDF5File &data_file, const DataMessage &msg, size_t images_per_file) {
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reflection_group = std::make_unique<HDF5Group>(data_file, "/entry/reflections");
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reflection_group->NXClass("NXcollection");
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}
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void HDF5DataFilePluginReflection::Write(const DataMessage &msg, uint64_t image_number) {
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@@ -19,6 +18,21 @@ void HDF5DataFilePluginReflection::Write(const DataMessage &msg, uint64_t image_
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std::vector<float> I, sigma, d, lp;
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std::vector<float> image, phi, pred_x, pred_y, bkg, partiality, zeta;
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h.reserve(msg.reflections.size());
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k.reserve(msg.reflections.size());
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l.reserve(msg.reflections.size());
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I.reserve(msg.reflections.size());
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sigma.reserve(msg.reflections.size());
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d.reserve(msg.reflections.size());
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pred_x.reserve(msg.reflections.size());
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pred_y.reserve(msg.reflections.size());
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bkg.reserve(msg.reflections.size());
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lp.reserve(msg.reflections.size());
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partiality.reserve(msg.reflections.size());
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image.reserve(msg.reflections.size());
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phi.reserve(msg.reflections.size());
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zeta.reserve(msg.reflections.size());
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for (const auto &refl : msg.reflections) {
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image.emplace_back(refl.image_number);
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h.emplace_back(refl.h);
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