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jfjoch_writer: Reserve all metadata vectors when opening file
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This commit is contained in:
leonarski_f
2026-03-04 20:15:54 +01:00
parent 99e252bc72
commit 2be7780bc4
16 changed files with 108 additions and 56 deletions
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63
writer/HDF5DataFilePluginMX.cpp
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@@ -2,7 +2,6 @@
// SPDX-License-Identifier: GPL-3.0-only
#include "HDF5DataFilePluginMX.h"
#define RESERVE_IMAGES 1000
inline std::string to_bravais_code(const std::optional<LatticeMessage> &lm_opt) {
if (!lm_opt.has_value()) return "";
@@ -50,38 +49,50 @@ HDF5DataFilePluginMX::HDF5DataFilePluginMX(const StartMessage &msg)
: max_spots(msg.max_spot_count), indexing(msg.indexing_algorithm != IndexingAlgorithmEnum::None) {
}
void HDF5DataFilePluginMX::OpenFile(HDF5File &data_file, const DataMessage &msg) {
bkg_estimate.reserve(RESERVE_IMAGES);
void HDF5DataFilePluginMX::OpenFile(HDF5File &data_file, const DataMessage &msg, size_t images_per_file) {
bkg_estimate.reserve(images_per_file);
if (max_spots == 0)
return;
spot_x.reserve(max_spots * RESERVE_IMAGES);
spot_y.reserve(max_spots * RESERVE_IMAGES);
spot_int.reserve(max_spots * RESERVE_IMAGES);
spot_indexed.reserve(max_spots * RESERVE_IMAGES);
spot_ice_ring.reserve(max_spots * RESERVE_IMAGES);
spot_h.reserve(max_spots * RESERVE_IMAGES);
spot_k.reserve(max_spots * RESERVE_IMAGES);
spot_l.reserve(max_spots * RESERVE_IMAGES);
spot_dist_ewald.reserve(max_spots * RESERVE_IMAGES);
spot_x.reserve(max_spots * images_per_file);
spot_y.reserve(max_spots * images_per_file);
spot_int.reserve(max_spots * images_per_file);
spot_indexed.reserve(max_spots * images_per_file);
spot_ice_ring.reserve(max_spots * images_per_file);
spot_h.reserve(max_spots * images_per_file);
spot_k.reserve(max_spots * images_per_file);
spot_l.reserve(max_spots * images_per_file);
spot_dist_ewald.reserve(max_spots * images_per_file);
beam_corr_x.reserve(RESERVE_IMAGES);
beam_corr_y.reserve(RESERVE_IMAGES);
spot_x.reserve(max_spots * images_per_file);
spot_y.reserve(max_spots * images_per_file);
spot_int.reserve(max_spots * images_per_file);
spot_ice_ring.reserve(max_spots * images_per_file);
spot_h.reserve(max_spots * images_per_file);
spot_k.reserve(max_spots * images_per_file);
spot_l.reserve(max_spots * images_per_file);
spot_dist_ewald.reserve(max_spots * images_per_file);
if (indexing)
spot_indexed.reserve(max_spots * images_per_file);
if (indexing)
indexed_lattice.reserve(images_per_file * 9);
npeaks.reserve(RESERVE_IMAGES);
strong_pixel_count.reserve(RESERVE_IMAGES);
indexed.reserve(RESERVE_IMAGES);
profile_radius.reserve(RESERVE_IMAGES);
mosaicity_deg.reserve(RESERVE_IMAGES);
b_factor.reserve(RESERVE_IMAGES);
indexed_lattice.reserve(9 * RESERVE_IMAGES);
resolution_estimate.reserve(RESERVE_IMAGES);
beam_corr_x.reserve(images_per_file);
beam_corr_y.reserve(images_per_file);
spot_count_total.reserve(RESERVE_IMAGES);
spot_count_ice.reserve(RESERVE_IMAGES);
spot_count_indexed.reserve(RESERVE_IMAGES);
spot_count_low_res.reserve(RESERVE_IMAGES);
npeaks.reserve(images_per_file);
strong_pixel_count.reserve(images_per_file);
indexed.reserve(images_per_file);
profile_radius.reserve(images_per_file);
mosaicity_deg.reserve(images_per_file);
b_factor.reserve(images_per_file);
resolution_estimate.reserve(images_per_file);
spot_count_total.reserve(images_per_file);
spot_count_ice.reserve(images_per_file);
spot_count_indexed.reserve(images_per_file);
spot_count_low_res.reserve(images_per_file);
}
void HDF5DataFilePluginMX::Write(const DataMessage &msg, uint64_t image_number) {