Pinned host memory from a process-wide pool; the compressed chunk uploaded from pinned staging
The GPU engines are built per worker per step, and each took its page-locked host buffers with cudaHostAlloc / cudaHostRegister and gave them back with cudaFreeHost / cudaHostUnregister. Those calls map and lock pages under the process's memory-map lock, so all workers queue behind each other: on the 5080 workstation a myoglobin run made ~3400 of them (6-22 thread-s, depending on the load), 9gdj ~10400 (124 thread-s); on a four-socket host they cost 20-30 ms each. - CudaHostPtr takes its memory from a pool: a freed buffer is kept in a power-of-two size class for the next engine, up to 512 MiB in all; a buffer above 64 MiB is never kept. Rugnux::Run hands the pool back at its end. - PinnedVector (std::vector with the pool's allocator) replaces the registered vectors of AdaptiveSpotFinderGPU and ImagePreprocessorGPU; the Bragg predictors download into a pooled pinned buffer and copy into their output, instead of registering it. - BSLZ4DecoderGPU copies the compressed chunk into a pooled pinned buffer before the upload, so it is one DMA instead of the driver's pageable staging (9gdj: 163 GB pageable H2D, 52 s of copy time, -> 147 GB pinned, 13 s). Measured with nsys on the workstation: myob 3398 -> 1396 calls (674 of them the release at the end), cytc 2986 -> 1270, 9gdj 10428 -> 1748 (124 -> 3.7 thread-s). Output identical (p.hkl md5 on myob, cytc, 9gdj; CI tier battery). Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01EizBKhTqrAYago9KJG3dA3
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@@ -62,6 +62,10 @@ class BSLZ4DecoderGPU {
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std::shared_ptr<CudaStream> stream;
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CudaDevicePtr<uint8_t> gpu_compressed;
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// The chunk is copied here before it is uploaded. The reader's buffer is pageable, and the driver
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// uploads pageable memory through small staging buffers of its own, a piece at a time - at a few
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// GB/s on a host whose memory is far from the card. Copied here, the upload is one DMA at the link rate.
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CudaHostPtr<uint8_t> host_compressed;
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CudaDevicePtr<uint8_t> gpu_shuffled; // LZ4 output, still bitshuffled
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CudaDevicePtr<BSLZ4BlockDesc> gpu_desc;
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CudaHostPtr<BSLZ4BlockDesc> host_desc; // pinned, so the descriptor upload is truly async
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