From 07fa788fe27bdadd379c9399fb7a2a4ab421d6f1 Mon Sep 17 00:00:00 2001
From: Filip Leonarski <filip.leonarski@psi.ch>
Date: Fri, 30 Jan 2026 11:28:15 +0100
Subject: [PATCH] ColorScale: Add magma and inferno colormaps

---
 broker/OpenAPIConvert.cpp                     | 25 +++++++++++------
 broker/jfjoch_api.yaml                        |  6 +++-
 broker/redoc-static.html                      |  4 +--
 common/ColorScale.cpp                         |  4 +++
 common/ColorScale.h                           | 28 +++++++++++++------
 docs/ACKNOWLEDGEMENT.md                       |  2 +-
 frontend/package-lock.json                    |  4 +--
 frontend/src/components/PreviewImage.tsx      |  4 +++
 frontend/src/openapi/models/color_scale.ts    |  4 +++
 .../src/openapi/services/DefaultService.ts    |  2 +-
 viewer/toolbar/JFJochViewerToolbarDisplay.cpp |  6 ++--
 11 files changed, 63 insertions(+), 26 deletions(-)

diff --git a/broker/OpenAPIConvert.cpp b/broker/OpenAPIConvert.cpp
index b7a6b86b..a769b669 100644
--- a/broker/OpenAPIConvert.cpp
+++ b/broker/OpenAPIConvert.cpp
@@ -872,20 +872,27 @@ PlotType ConvertPlotType(const std::optional<std::string>& input) {
                           "Plot type not recognized");
 }
 
-ColorScaleEnum ConvertColorScale(const std::optional<std::string>& input) {
-   std::string color = input.value_or("indigo");
+ColorScaleEnum ConvertColorScale(const std::optional<std::string> &input) {
+    std::string color = input.value_or("indigo");
 
     if (color == "viridis")
         return ColorScaleEnum::Viridis;
-    else if (color == "bw")
+    if (color == "bw")
         return ColorScaleEnum::BW;
-    else if (color == "heat")
-       return ColorScaleEnum::Heat;
-    else if (color == "indigo")
+    if (color == "wb")
+        return ColorScaleEnum::WB;
+    if (color == "green")
+        return ColorScaleEnum::Green3;
+    if (color == "heat")
+        return ColorScaleEnum::Heat;
+    if (color == "indigo")
         return ColorScaleEnum::Indigo;
-    else
-        throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
-                              "Color scale unknown");
+    if (color == "magma")
+        return ColorScaleEnum::Magma;
+    if (color == "inferno")
+        return ColorScaleEnum::Inferno;
+    throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
+                          "Color scale unknown");
 }
 
 IndexingSettings Convert(const org::openapitools::server::model::Indexing_settings &input) {
diff --git a/broker/jfjoch_api.yaml b/broker/jfjoch_api.yaml
index 1391efa3..57b1445c 100644
--- a/broker/jfjoch_api.yaml
+++ b/broker/jfjoch_api.yaml
@@ -221,14 +221,18 @@ components:
     color_scale:
       in: query
       name: color
-      description: "Color scale for preview image: 0 - indigo, 1 - viridis, 2 - B/W, 3 - heat"
+      description: "Color scale for preview image"
       schema:
         type: string
         enum:
           - "indigo"
           - "viridis"
           - "bw"
+          - "wb"
+          - "green"
           - "heat"
+          - "magma"
+          - "inferno"
         default: "indigo"
   schemas:
     grid_scan:
diff --git a/broker/redoc-static.html b/broker/redoc-static.html
index 5e42adec..426aa7e7 100644
--- a/broker/redoc-static.html
+++ b/broker/redoc-static.html
@@ -1376,7 +1376,7 @@ This format doesn&#x27;t transmit information about X-axis, only values, so it i
 " class="sc-eVqvcJ sc-fszimp kIppRw drqpJr"><p>Quality of JPEG image (100 - highest; 0 - lowest)</p>
 </div></div></div></td></tr><tr class=""><td kind="field" title="show_res_ring" class="sc-kCuUfV sc-fbQrwq gdmNWp dFOJWJ"><span class="sc-hwddKA cteAyA"></span><span class="property-name">show_res_ring</span></td><td class="sc-gGKoUb ixGaBD"><div><div><span class="sc-bEjUoa sc-boKDdR lhyyLL jYezsP"></span><span class="sc-bEjUoa sc-fOOuSg lhyyLL dbKJYq">number</span><span class="sc-bEjUoa sc-fOOuSg lhyyLL dbKJYq"> <!-- -->&lt;<!-- -->float<!-- -->&gt;<!-- --> </span><span> <span class="sc-bEjUoa sc-goiVcJ lhyyLL bDfgbe"> <!-- -->[ 0.1 .. 100 ]<!-- --> </span></span></div><div><span class="sc-bEjUoa lhyyLL"> <!-- -->Default:<!-- --> </span> <span class="sc-bEjUoa sc-dTWiOz lhyyLL kMQdIk">0.1</span></div> <div><div html="&lt;p&gt;Show resolution ring, provided in Angstrom&lt;/p&gt;
 " class="sc-eVqvcJ sc-fszimp kIppRw drqpJr"><p>Show resolution ring, provided in Angstrom</p>
-</div></div></div></td></tr><tr class=""><td kind="field" title="color" class="sc-kCuUfV sc-fbQrwq gdmNWp dFOJWJ"><span class="sc-hwddKA cteAyA"></span><span class="property-name">color</span></td><td class="sc-gGKoUb ixGaBD"><div><div><span class="sc-bEjUoa sc-boKDdR lhyyLL jYezsP"></span><span class="sc-bEjUoa sc-fOOuSg lhyyLL dbKJYq">string</span></div><div><span class="sc-bEjUoa lhyyLL"> <!-- -->Default:<!-- --> </span> <span class="sc-bEjUoa sc-dTWiOz lhyyLL kMQdIk">&quot;indigo&quot;</span></div><div><span class="sc-bEjUoa lhyyLL"> <!-- -->Enum<!-- -->:</span> <span class="sc-bEjUoa sc-dTWiOz lhyyLL kMQdIk">&quot;indigo&quot;</span> <span class="sc-bEjUoa sc-dTWiOz lhyyLL kMQdIk">&quot;viridis&quot;</span> <span class="sc-bEjUoa sc-dTWiOz lhyyLL kMQdIk">&quot;bw&quot;</span> <span class="sc-bEjUoa sc-dTWiOz lhyyLL kMQdIk">&quot;heat&quot;</span> </div> <div><div html="&lt;p&gt;Color scale for preview image: 0 - indigo, 1 - viridis, 2 - B/W, 3 - heat&lt;/p&gt;
+</div></div></div></td></tr><tr class=""><td kind="field" title="color" class="sc-kCuUfV sc-fbQrwq gdmNWp dFOJWJ"><span class="sc-hwddKA cteAyA"></span><span class="property-name">color</span></td><td class="sc-gGKoUb ixGaBD"><div><div><span class="sc-bEjUoa sc-boKDdR lhyyLL jYezsP"></span><span class="sc-bEjUoa sc-fOOuSg lhyyLL dbKJYq">string</span></div><div><span class="sc-bEjUoa lhyyLL"> <!-- -->Default:<!-- --> </span> <span class="sc-bEjUoa sc-dTWiOz lhyyLL kMQdIk">&quot;indigo&quot;</span></div><div><span class="sc-bEjUoa lhyyLL"> <!-- -->Enum<!-- -->:</span> <span class="sc-bEjUoa sc-dTWiOz lhyyLL kMQdIk">&quot;indigo&quot;</span> <span class="sc-bEjUoa sc-dTWiOz lhyyLL kMQdIk">&quot;viridis&quot;</span> <span class="sc-bEjUoa sc-dTWiOz lhyyLL kMQdIk">&quot;bw&quot;</span> <span class="sc-bEjUoa sc-dTWiOz lhyyLL kMQdIk">&quot;wb&quot;</span> <span class="sc-bEjUoa sc-dTWiOz lhyyLL kMQdIk">&quot;green&quot;</span> <span class="sc-bEjUoa sc-dTWiOz lhyyLL kMQdIk">&quot;heat&quot;</span> <span class="sc-bEjUoa sc-dTWiOz lhyyLL kMQdIk">&quot;magma&quot;</span> <span class="sc-bEjUoa sc-dTWiOz lhyyLL kMQdIk">&quot;inferno&quot;</span> </div> <div><div html="&lt;p&gt;Color scale for preview image: 0 - indigo, 1 - viridis, 2 - B/W, 3 - heat&lt;/p&gt;
 " class="sc-eVqvcJ sc-fszimp kIppRw drqpJr"><p>Color scale for preview image: 0 - indigo, 1 - viridis, 2 - B/W, 3 - heat</p>
 </div></div></div></td></tr><tr class="last "><td kind="field" title="show_res_est" class="sc-kCuUfV sc-fbQrwq gdmNWp dFOJWJ"><span class="sc-hwddKA cteAyA"></span><span class="property-name">show_res_est</span></td><td class="sc-gGKoUb ixGaBD"><div><div><span class="sc-bEjUoa sc-boKDdR lhyyLL jYezsP"></span><span class="sc-bEjUoa sc-fOOuSg lhyyLL dbKJYq">boolean</span></div><div><span class="sc-bEjUoa lhyyLL"> <!-- -->Default:<!-- --> </span> <span class="sc-bEjUoa sc-dTWiOz lhyyLL kMQdIk">false</span></div> <div><div html="&lt;p&gt;Show resolution estimation as a ring&lt;/p&gt;
 " class="sc-eVqvcJ sc-fszimp kIppRw drqpJr"><p>Show resolution estimation as a ring</p>
@@ -1424,7 +1424,7 @@ then image might be replaced in the buffer between calling /images and /image.cb
 " class="sc-eVqvcJ sc-fszimp kIppRw drqpJr"><p>Test Jungfraujoch system</p>
 </div><div tabindex="0" role="button"><div class="sc-xKhEK okJpy"><span>http://localhost:5232</span>/version</div></div></div></div></div></div></div></div></div><div class="sc-evkzZa iZqpqg"></div></div></div>
       <script>
-      const __redoc_state = {"menu":{"activeItemIdx":-1},"spec":{"data":{"openapi":"3.0.3","info":{"title":"Jungfraujoch","description":"API to control Jungfraujoch developed by the Paul Scherrer Institute (Switzerland).\nJungfraujoch is a data acquisition and analysis system for pixel array detectors, primarly PSI JUNGFRAU.\nJungfraujoch uses FPGA boards to acquire data at high data rates.\n\n# License Clarification\n\nWhile this API definition is licensed under GPL-3.0, **the GPL copyleft provisions do not apply**\nwhen this file is used solely to generate OpenAPI clients or when implementing applications that\ninteract with the API. Generated client code and applications using this API definition are not\nsubject to the GPL license requirements and may be distributed under terms of your choosing.\n\nThis exception is similar in spirit to the Linux Kernel's approach to userspace API headers and\nthe GCC Runtime Library Exception. The Linux Kernel developers have explicitly stated that\nuser programs that merely use the kernel interfaces (syscalls, ioctl definitions, etc.) are not\nderivative works of the kernel and are not subject to the terms of the GPL.\n\nThis exception is intended to allow wider use of this API specification without imposing GPL\nrequirements on applications that merely interact with the API, regardless of whether they\ncommunicate through network calls or other mechanisms.\n","version":"1.0.0-rc.123","contact":{"name":"Filip Leonarski (Paul Scherrer Institute)","email":"filip.leonarski@psi.ch"},"license":{"name":"GPL-3.0","url":"https://www.gnu.org/licenses/gpl-3.0.html"}},"servers":[{"url":"http://localhost:5232","description":"Test Jungfraujoch system"}],"components":{"parameters":{"binning":{"in":"query","name":"binning","required":false,"schema":{"default":1,"type":"integer"},"description":"Binning of frames for the plot (0 = default binning)"},"compression":{"in":"query","name":"compression","required":false,"schema":{"type":"boolean","default":false},"description":"Enable DEFLATE compression of output data."},"experimental_coord":{"in":"query","name":"experimental_coord","required":false,"schema":{"type":"boolean","default":false},"description":"If measurement has goniometer axis defined, plot X-axis will represent rotation angle\nIf measurement has grid scan defined, plot X-axis and Y-axis will represent grid position, Z will be used as the final value\nFor still measurement the number is ignored\n"},"azint_unit":{"in":"query","name":"azint_unit","required":false,"schema":{"type":"string","enum":["Q_recipA","d_A","two_theta_deg"],"default":"Q_recipA"},"description":"Unit used for azim int.\n"},"fill_value":{"in":"query","name":"fill","required":false,"schema":{"type":"number","format":"float"},"description":"Fill value for elements that were missed during data collection\n"},"plot_type":{"in":"query","name":"type","required":true,"description":"Type of requested plot","schema":{"type":"string","enum":["bkg_estimate","azint","azint_1d","spot_count","spot_count_low_res","spot_count_indexed","spot_count_ice","indexing_rate","indexing_time","indexing_unit_cell_length","indexing_unit_cell_angle","profile_radius","mosaicity","b_factor","error_pixels","saturated_pixels","image_collection_efficiency","receiver_delay","receiver_free_send_buf","strong_pixels","roi_sum","roi_mean","roi_max_count","roi_pixels","roi_weighted_x","roi_weighted_y","packets_received","max_pixel_value","resolution_estimate","pixel_sum","processing_time","beam_center_x","beam_center_y"]}},"roi":{"in":"query","name":"roi","required":false,"schema":{"type":"string","minLength":1},"description":"Name of ROI for which plot is requested"},"image_id":{"in":"query","name":"id","required":false,"schema":{"type":"integer","format":"int64","default":-1,"minimum":-2},"description":"Image ID in the image buffer. Special values: -1 - last image in the buffer, -2: last indexed image in the buffer"},"saturation":{"in":"query","name":"saturation","required":false,"schema":{"type":"number","format":"float","minimum":-32767,"maximum":32767},"description":"Saturation value to set contrast in the preview image; if not provided, then autocontrast procedure is used"},"background":{"in":"query","name":"background","required":false,"schema":{"type":"number","format":"float","default":0,"minimum":-32767,"maximum":32767},"description":"Background value to set contrast in the preview image"},"show_spots":{"in":"query","name":"show_spots","schema":{"type":"boolean","default":true},"description":"Show spot finding results on the image"},"show_beam_center":{"in":"query","name":"show_beam_center","schema":{"type":"boolean","default":true},"description":"Show beam center on the image"},"show_roi":{"in":"query","name":"show_roi","schema":{"type":"boolean","default":false},"description":"Show ROI areas on the image"},"jpeg_quality":{"in":"query","name":"jpeg_quality","description":"Quality of JPEG image (100 - highest; 0 - lowest)","schema":{"type":"integer","format":"int64","default":100,"minimum":0,"maximum":100}},"show_user_mask":{"in":"query","name":"show_user_mask","schema":{"type":"boolean","default":false},"description":"Show user mask"},"resolution_ring":{"in":"query","name":"show_res_ring","description":"Show resolution ring, provided in Angstrom","schema":{"type":"number","format":"float","default":0.1,"minimum":0.1,"maximum":100}},"resolution_estimate":{"in":"query","name":"show_res_est","description":"Show resolution estimation as a ring","schema":{"type":"boolean","default":false}},"color_scale":{"in":"query","name":"color","description":"Color scale for preview image: 0 - indigo, 1 - viridis, 2 - B/W, 3 - heat","schema":{"type":"string","enum":["indigo","viridis","bw","heat"],"default":"indigo"}}},"schemas":{"grid_scan":{"description":"Definition of a grid scan (mutually exclusive with `rotation_axis`)","type":"object","required":["n_fast","step_x_um","step_y_um"],"properties":{"n_fast":{"type":"integer","format":"int64","minimum":1,"example":20,"description":"Number of elements in the fast direction"},"step_x_um":{"type":"number","format":"float","example":5,"description":"Step in grid along the fast direction. Can be negative. \nPositive number: left to right\nNegative number: right to left\n"},"step_y_um":{"type":"number","format":"float","example":-3,"description":"Step in grid along the slow direction. Can be negative. \nPositive number: top to bottom\nNegative number: bottom to top\n"},"vertical":{"type":"boolean","default":false,"description":"If disabled: fast direction = X, slow direction = Y\nIf enabled: fast direction = Y, slow direction = X\n"},"snake":{"type":"boolean","default":false,"description":"Flip fast direction for every second row\n"}}},"rotation_axis":{"description":"Definition of a crystal rotation axis","type":"object","required":["step","vector"],"properties":{"name":{"type":"string","default":"omega","minLength":1,"description":"Name of rotation axis (e.g., omega, phi)"},"step":{"type":"number","format":"float","example":0.1,"description":"Angle step (per image) in degrees"},"start":{"type":"number","format":"float","example":50,"description":"Start angle in degrees","default":0},"vector":{"type":"array","description":"Rotation axis","example":[1,0,0],"items":{"type":"number","format":"float"},"minItems":3,"maxItems":3},"helical_step_um":{"type":"array","description":"Translation (per image) for helical scan","example":[-5,-2,0],"items":{"type":"number","format":"float"},"minItems":3,"maxItems":3},"screening_wedge_deg":{"type":"number","format":"float","description":"Wedge angle value; used if rotation per image is smaller than increment between images (so particularly in screening)"}}},"indexing_algorithm":{"type":"string","description":"Selection of an indexing algorithm used by Jungfraujoch\n","enum":["FFBIDX","FFT","FFTW","Auto","None"],"default":"FFBIDX"},"geom_refinement_algorithm":{"type":"string","description":"Selection of an post-indexing detector geometry refinement algorithm used by Jungfraujoch.\nThis option is using non-linear least squares optimization to find unit cell and beam center.\n","enum":["BeamCenter","None"]},"dataset_settings":{"type":"object","required":["beam_x_pxl","beam_y_pxl","detector_distance_mm","incident_energy_keV"],"properties":{"images_per_trigger":{"type":"integer","format":"int64","minimum":1,"default":1,"description":"For standard synchrotron data collection - this is number of images collected per one TTL trigger\nFor XFEL (pulsed source) - this number is ignored and set to 1\nFor storage cell mode - this number is ignored and set to number of storage cells\n"},"ntrigger":{"type":"integer","format":"int64","default":1,"minimum":1,"description":"Number of TTL trigger that the detector is expected to receive during data collection\n"},"image_time_us":{"type":"integer","format":"int64","minimum":0,"description":"Image time. \nIf not provided (or zero value) the frame time is assumed as default.\nFor JUNGFRAU image time must be multiple of frame time and max value is 256 * frame_time.            \nIn XFEL mode: summation happens for frames collected with multiple triggers.\nIgnored for storage cells and if raw data are saved.\n"},"beam_x_pxl":{"type":"number","format":"float","description":"/entry/detector/beam_center_x in NXmx\nBeam center in X direction [pixels]\n"},"beam_y_pxl":{"type":"number","format":"float","description":"/entry/detector/beam_center_y in NXmx\nBeam center in X direction [pixels]\n"},"detector_distance_mm":{"type":"number","format":"float","minimum":0,"description":"/entry/detector/distance in NXmx Detector distance [mm]"},"incident_energy_keV":{"type":"number","format":"float","minimum":0.001,"maximum":500,"description":"Used to calculate /entry/beam/incident_wavelength in NXmx\nIncident particle (photon, electron) energy in keV\n"},"file_prefix":{"type":"string","default":"","description":"Prefix for filenames. If left empty, no file will be saved."},"images_per_file":{"type":"integer","format":"int64","minimum":0,"default":1000,"description":"Number of files in a single HDF5 data file (0 = write all images to a single data file)."},"space_group_number":{"type":"integer","format":"int64","minimum":1,"maximum":194,"description":"Number of space group for the crystal. Currently used solely as metadata, not relevant for image processing done in Jungfraujoch."},"sample_name":{"type":"string","default":"","description":"/entry/sample/name in NXmx\nSample name\n"},"compression":{"type":"string","enum":["bslz4","bszstd","bszstd_rle","none"],"default":"bslz4","description":"Compression type for the images transferred over ZeroMQ and saved to HDF5 file.\n"},"total_flux":{"type":"number","format":"float","description":"/entry/beam/total_flux in NXmx\nFlux incident on beam plane in photons per second. In other words this is the flux integrated over area. [photons/s]\n"},"transmission":{"type":"number","format":"float","minimum":0,"maximum":1,"description":"/entry/instrument/attenuator/attenuator_transmission\nTransmission of attenuator (filter) [no units]\n"},"goniometer":{"$ref":"#/components/schemas/rotation_axis"},"grid_scan":{"$ref":"#/components/schemas/grid_scan"},"header_appendix":{"description":"Header appendix, added as user_data/user to start ZeroMQ message (can be any valid JSON)\nIn general, it is not saved in HDF5 file.\n\nHowever, if values are placed in \"hdf5\" object, `jfjoch_writer` will write them in /entry/data of the HDF5 file. \nThis applies solely to string and number (double floating-point). No arrays/sub-objects is allowed.\nFor example {\"hdf5\": {\"val1\":1, \"val2\":\"xyz\"}}, will write /entry/user/val1 and /entry/user/val2.\n"},"image_appendix":{"description":"Image appendix, added as user_data to image ZeroMQ message (can be any valid JSON)\nNot saved in HDF5 file\n"},"data_reduction_factor_serialmx":{"type":"number","format":"float","default":1,"minimum":0,"maximum":1,"description":"Rate at which non-indexed images are accepted to be forwarded to writer. \nValue of 1.0 (default) means that all images are written.\nValues below zero mean that non-indexed images will be accepted with a given probability.\n"},"pixel_value_low_threshold":{"type":"integer","format":"int64","minimum":0,"description":"Set all counts lower than the value to zero. \nWhen the value is set, negative numbers other than error pixel value are always set to zero.\nSetting to zero is equivalent to turning the option off.\n"},"run_number":{"type":"integer","format":"int64","minimum":0,"description":"Number of run within an experimental session. \nTransferred over CBOR stream as \"series ID\", though not saved in HDF5 file.\nIt is highly recommended to keep this number unique for each data collection during experimental series.\nIf not provided, the number will be automatically incremented.\n"},"run_name":{"type":"string","description":"Unique ID of run.\nTransferred over CBOR stream as \"unique series ID\", though not saved in HDF5 file.\nIt is highly recommended to keep this name unique for each data collection during experimental series.\nIf not provided, the name will be automatically generated as number + colon + file_prefix.\n"},"experiment_group":{"type":"string","description":"Name of group owning the data (e.g. p-group or proposal number). \nTransferred over CBOR stream, though not saved in HDF5 file.\n"},"poisson_compression":{"type":"integer","format":"int64","minimum":0,"maximum":16,"description":"Enable lossy compression of pixel values that preserves Poisson statistics. \nRequires to provide a numerical factor SQ.\nPixel value P will be transformed to round(sqrt(P) * SQ), with rounding to the closest integer.\nCompression is turned off if the value is missing or it is set to zero.\n"},"write_nxmx_hdf5_master":{"type":"boolean","default":true,"description":"Write NXmx formatted HDF5 master file. Recommended to use for macromolecular crystallography experiments\nand to turn off for other experiments.\n"},"save_calibration":{"type":"boolean","description":"Forward image calibration (at the moment pedestal and pedestal RMS for JUNGFRAU) using the ZeroMQ stream to writer.\nIf parameter is not provided calibration will be saved only if more than 4 images are recorded.\n"},"polarization_factor":{"type":"number","description":"Polarization factor for integration; 1.0 is horizontal polarization; -1.0 is vertical polarization","format":"float","minimum":-1,"maximum":1},"ring_current_mA":{"type":"number","format":"float","description":"Ring current at the beginning of the data collection","minimum":0},"sample_temperature_K":{"type":"number","format":"float","description":"Sample temperature in Kelvin","minimum":0},"poni_rot1_rad":{"type":"number","description":"PONI angle rot1 (see PyFAI documentation for details) in radians","format":"float","minimum":-6.28318530718,"maximum":6.28318530718,"default":0},"poni_rot2_rad":{"type":"number","description":"PONI angle rot2 (see PyFAI documentation for details) in radians","format":"float","minimum":-6.28318530718,"maximum":6.28318530718,"default":0},"poni_rot3_rad":{"type":"number","description":"PONI angle rot3 (see PyFAI documentation for details) in radians","format":"float","minimum":-6.28318530718,"maximum":6.28318530718,"default":0},"unit_cell":{"$ref":"#/components/schemas/unit_cell"},"spot_finding":{"type":"boolean","description":"Enable spot finding and save spots","default":true},"max_spot_count":{"type":"integer","minimum":10,"maximum":2000,"default":250,"description":"Maximum number of spots that are saved/used for indexing; spots with highest intensity are selected"},"detect_ice_rings":{"type":"boolean","description":"Flag spots as ice rings and reduce their effect on indexing"},"xray_fluorescence_spectrum":{"type":"object","required":["energy_eV","data"],"properties":{"energy_eV":{"type":"array","items":{"type":"number","format":"float"},"description":"X-ray fluorescence scan energy for each measurement point"},"data":{"type":"array","items":{"type":"number","format":"float"},"description":"X-ray fluorescence scan result in arbitrary units; must be exactly the same length, as energy_eV"}}}}},"crystal_lattice":{"type":"array","items":{"type":"number","format":"float"},"minItems":9,"maxItems":9,"description":"Real-space crystal lattice 3D vectors in Angstrom.\nOrder is 1st vector (x,y,z), 2nd vector (x,y,z) and 3rd vector (x,y,z)\n"},"unit_cell":{"type":"object","description":"Unit cell parameters. Necessary to run indexing. Units of angstrom and degree","required":["a","b","c","alpha","beta","gamma"],"properties":{"a":{"type":"number","format":"float","example":37,"minimum":0},"b":{"type":"number","format":"float","example":37,"minimum":0},"c":{"type":"number","format":"float","example":78,"minimum":0},"alpha":{"type":"number","format":"float","example":90,"minimum":0,"maximum":360},"beta":{"type":"number","format":"float","example":90,"minimum":0,"maximum":360},"gamma":{"type":"number","format":"float","example":90,"minimum":0,"maximum":360}}},"file_writer_format":{"type":"string","enum":["None","NXmxLegacy","NXmxVDS","CBF","TIFF","NoFileWritten"],"default":"NXmxLegacy","description":"None - no master file written\nNXmxLegacy - legacy format with soft links to data files in the master file; necessary for DECTRIS Albula 4.0 and DECTRIS Neggia  \nNXmxVDS - newer format with virtual dataset linking data files in the master file, also includes better metadata handling\n"},"file_writer_settings":{"type":"object","properties":{"overwrite":{"type":"boolean","default":false,"description":"Inform jfjoch_write to overwrite existing files. Otherwise files would be saved with .h5.{timestamp}.tmp suffix.\n"},"format":{"$ref":"#/components/schemas/file_writer_format"}}},"pixel_mask_statistics":{"type":"object","properties":{"user_mask":{"description":"Number of pixels masked using the user mask","type":"integer","format":"int64","minimum":0},"too_high_pedestal_rms":{"description":"Number of pixels with G0 pedestal RMS higher than provided threshold","type":"integer","format":"int64","minimum":0},"wrong_gain":{"description":"Number of pixels that show wrong gain level during the pedestal procedure","type":"integer","format":"int64","minimum":0}}},"image_buffer_status":{"type":"object","required":["image_numbers","total_slots","available_slots","max_image_number","min_image_number"],"properties":{"min_image_number":{"type":"integer","format":"int64","minimum":0,"description":"Smallest image number available in the buffer"},"max_image_number":{"type":"integer","format":"int64","minimum":0,"description":"Largest image number available in the buffer"},"image_numbers":{"type":"array","description":"Image numbers currently present in the buffer.","items":{"type":"integer","format":"int64"}},"total_slots":{"type":"integer","format":"int64","description":"Number of slots in the image buffer. 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NXmx gives a fixed dictionary, though Jungfraujoch is not enforcing compliance. \nhttps://manual.nexusformat.org/classes/base_classes/NXsource.html#nxsource\nNXsource allows the following:\n\nSpallation Neutron Source\nPulsed Reactor Neutron Source\nReactor Neutron Source\nSynchrotron X-ray Source\nPulsed Muon Source\nRotating Anode X-ray\nFixed Tube X-ray\nUV Laser\nFree-Electron Laser\nOptical Laser\nIon Source\nUV Plasma Source\nMetal Jet X-ray\n","example":"Synchrotron X-ray Source","default":""},"instrument_name":{"type":"string","example":"CristallinaMX"},"pulsed_source":{"type":"boolean","description":"Settings specific to XFEL (e.g., every image has to come from TTL trigger, save pulse ID and event code)\n","default":false},"electron_source":{"type":"boolean","description":"Settings specific to electron source (e.g., wavelength definition)\n","default":false}}},"detector_module_direction":{"type":"string","enum":["Xp","Xn","Yp","Yn"]},"detector_type":{"type":"string","enum":["EIGER","JUNGFRAU","DECTRIS"]},"image_pusher_type":{"type":"string","default":"None","enum":["ZeroMQ","HDF5","CBOR","None"]},"standard_detector_geometry":{"type":"object","description":"Regular rectangular geometry, first module is in the bottom left corner of the detector","required":["nmodules"],"properties":{"nmodules":{"type":"integer","minimum":1,"description":"Number of modules in the detector"},"gap_x":{"type":"integer","default":8,"minimum":0,"description":"Gap size in X direction [pixels]"},"gap_y":{"type":"integer","minimum":0,"default":36,"description":"Gap size in Y direction [pixels]"},"modules_in_row":{"type":"integer","minimum":1,"default":1,"description":"Number of modules in one row"}}},"detector_module":{"type":"object","required":["x0","y0","fast_axis","slow_axis"],"properties":{"x0":{"type":"number"},"y0":{"type":"number"},"fast_axis":{"$ref":"#/components/schemas/detector_module_direction"},"slow_axis":{"$ref":"#/components/schemas/detector_module_direction"}}},"detector":{"type":"object","required":["description"],"properties":{"description":{"type":"string","minLength":1},"serial_number":{"type":"string","default":"Unknown","minLength":1},"type":{"$ref":"#/components/schemas/detector_type"},"high_voltage_V":{"type":"integer","format":"int64","minimum":0,"maximum":200,"default":0},"udp_interface_count":{"type":"integer","format":"int64","minimum":1,"maximum":2,"default":1},"module_sync":{"type":"boolean","default":true,"description":"Use module 0 as master for timing. Only applies to JUNGFRAU detector (this cannot be turned off for EIGER)."},"sensor_thickness_um":{"type":"number","format":"float","minimum":0,"default":320},"readout_time_us":{"type":"integer","format":"int64","minimum":1,"description":"Minimum difference between frame time and count time in microseconds\nDefaults are 3 us for EIGER and 20 us for JUNGFRAU\n"},"minimum_count_time_us":{"type":"integer","format":"int64","minimum":0,"description":"Minimum count time available for the detector."},"minimum_frame_time_us":{"type":"integer","format":"int64","minimum":0,"description":"Minimum frame time available for the detector."},"calibration_file":{"type":"array","description":"Can be empty for all detectors - default calibration used.\nFor JUNGFRAU: list of gain files, one entry per module.\nFor EIGER: one directory (with detector settings) or list of trim bit files, one entry per half-module.\n","items":{"type":"string"}},"hostname":{"type":"array","description":"Hostname for detector module. One entry per module\nOne entry per module. Either empty or number of module entries.\n","items":{"type":"string"}},"sensor_material":{"type":"string","default":"Si"},"tx_delay":{"type":"array","items":{"type":"integer","format":"int64"}},"base_data_ipv4_address":{"type":"string","example":"10.10.10.50"},"standard_geometry":{"$ref":"#/components/schemas/standard_detector_geometry"},"custom_geometry":{"type":"array","items":{"$ref":"#/components/schemas/detector_module"}},"roi_mode":{"type":"string","default":"","description":"ROI setting for DECTRIS detectors"},"mirror_y":{"type":"boolean","default":true,"description":"Mirror detector in Y direction to account for MX convention of (0,0) point in top left corner"},"temp_thresold_degC":{"type":"integer","format":"int64","description":"Temperature threshold for JUNGFRAU detector modules","minimum":40,"maximum":70,"default":55},"default_settings":{"$ref":"#/components/schemas/detector_settings"}}},"zeromq_settings":{"type":"object","description":"ZeroMQ configuration for Jungfraujoch software.\nThis structure is used to provide default settings using configuration JSON file and is not used in HTTP.\n","properties":{"send_watermark":{"type":"integer","format":"int64","minimum":2,"maximum":16384,"default":100,"description":"Watermark for ZeroMQ send queue (number of outstanding messages queued on Jungfraujoch server per queue)"},"send_buffer_size":{"type":"integer","format":"int64","description":"Send buffer size for ZeroMQ socket"},"image_socket":{"type":"array","items":{"type":"string"},"example":["tcp://1.2.3.4:5000","tcp://1.2.3.4:5001"],"description":"PUSH ZeroMQ socket for images. In case multiple sockets are provided, images are streamed over multiple sockets.  \nImages are serialized using CBOR.\nAddress follows ZeroMQ convention for sockets - in practice ipc://<socket file> and tpc://<IP address>:<port> sockets are OK.\n0.0.0.0 instead of IP address is accepted and means listening on all network interfaces.\n"},"writer_notification_socket":{"type":"string","example":"tcp://1.3.4.6:7000","description":"PULL ZeroMQ socket for notifications from writer that it finished operation. \nThis allows Jungfraujoch to operate in a synchronous manner, with end of acquisition being also end of writing.\nAddress follows ZeroMQ convention for sockets - in practice ipc://<socket file> and tpc://<IP address>:<port> sockets are OK.\n0.0.0.0 instead of IP address should be avoided, as this socket address is forwarded to the writer process via START ZerOMQ message and in case of multiple ineterfaces the address might be ambigous.\nUsing * (star) instead of port number is allowed and it means a random free port number.\n"}}},"pcie_devices":{"type":"array","minLength":1,"items":{"type":"object","required":["block_device"],"properties":{"blk":{"type":"string","example":"/dev/jfjoch0","description":"Block device name"},"ipv4":{"type":"string","example":"10.1.1.7","description":"IPv4 address of the block device"}}}},"jfjoch_settings":{"type":"object","required":["detector","frontend_directory","image_pusher"],"description":"Default settings for Jungfraujoch software. \nThis structure is used to provide default settings using configuration JSON file and is not used in HTTP.\n","properties":{"pcie":{"$ref":"#/components/schemas/pcie_devices"},"zeromq":{"$ref":"#/components/schemas/zeromq_settings"},"instrument":{"$ref":"#/components/schemas/instrument_metadata"},"file_writer":{"$ref":"#/components/schemas/file_writer_settings"},"detector":{"type":"array","minLength":1,"items":{"$ref":"#/components/schemas/detector"}},"indexing":{"$ref":"#/components/schemas/indexing_settings"},"detector_settings":{"$ref":"#/components/schemas/detector_settings"},"azim_int":{"$ref":"#/components/schemas/azim_int_settings"},"image_format":{"$ref":"#/components/schemas/image_format_settings"},"image_buffer_MiB":{"type":"integer","minimum":128,"default":2048,"description":"Size of internal buffer in MiB for images before they are sent to a stream"},"verbose":{"type":"boolean","default":false,"description":"Print extra debug information"},"receiver_threads":{"type":"integer","minimum":1,"maximum":512,"default":64,"description":"Number of threads used by the receiver"},"numa_policy":{"type":"string","description":"NUMA policy to bind CPUs"},"frontend_directory":{"type":"string","description":"Location of built JavaScript web frontend"},"ssl":{"type":"object","required":["certificate","key"],"properties":{"certificate":{"type":"string","minLength":1,"example":"server.crt"},"key":{"type":"string","minLength":1,"example":"server.key"}}},"spot_finding":{"$ref":"#/components/schemas/spot_finding_settings"},"image_pusher":{"$ref":"#/components/schemas/image_pusher_type"},"zeromq_preview":{"$ref":"#/components/schemas/zeromq_preview_settings"},"zeromq_metadata":{"$ref":"#/components/schemas/zeromq_metadata_settings"},"dark_mask":{"$ref":"#/components/schemas/dark_mask_settings"}}},"zeromq_metadata_settings":{"type":"object","required":["enabled","period_ms"],"properties":{"enabled":{"type":"boolean","default":true,"description":"ZeroMQ metadata socket is enabled."},"period_ms":{"type":"integer","format":"int64","minimum":1,"default":1000,"description":"Period for generating metadata package sent to the ZeroMQ interface in milliseconds.\n"},"socket_address":{"type":"string","description":"PUB ZeroMQ socket for image metadata information.\nImage metadata are serialized using CBOR.\nAddress follows ZeroMQ convention for sockets - in practice ipc://<socket file> and tcp://<IP address>:<port> sockets are OK.\n0.0.0.0 instead of IP address is accepted and means listening on all network interfaces.\n"}}},"zeromq_preview_settings":{"type":"object","required":["enabled","period_ms"],"properties":{"enabled":{"type":"boolean","default":true,"description":"ZeroMQ preview socket is enabled."},"period_ms":{"type":"integer","format":"int64","default":1000,"description":"Period for generating preview image sent to the ZeroMQ interface in milliseconds. Default is 1 second. \nIf set to zero, all images will be sent ZeroMQ (should be used only in case of relatively slow data collection).\nThis has no effect on HTTP based preview, which updates always at rate of 1 second.\n"},"socket_address":{"type":"string","description":"PUB ZeroMQ socket for preview images. This socket operates at a reduced frame rate.\nImages are serialized using CBOR.\nAddress follows ZeroMQ convention for sockets - in practice ipc://<socket file> and tcp://<IP address>:<port> sockets are OK.\n0.0.0.0 instead of IP address is accepted and means listening on all network interfaces.\n"}}}}},"paths":{"/initialize":{"post":{"summary":"Initialize detector and data acquisition","description":"Should be used in two cases:\n  - Detector is in `Inactive` state\n  - Detector is in `Error` state\nX-ray shutter must be closed. \nThis operation will reconfigure network interface of the detector. \nDuring operation of the detector it is recommended to use the `POST /pedestal` operation instead.\nIf storage cells are used, the execution time might be few minutes.\n\nThis is async function - one needs to use `POST /wait_till_done` to ensure operation is done.\n","responses":{"200":{"description":"Initialization started"},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/pedestal":{"post":{"summary":"Collect dark current for the detector","description":"Updates calibration of the JUNGFRAU detector. Must be in `Idle` state.\n\nX-ray shutter must be closed. Recommended to run once per hour for long integration times (> 100 us).\n\nThis is async function - one needs to use `POST /wait_till_done` to ensure operation is done.\n","responses":{"200":{"description":"Everything OK"},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/start":{"post":{"summary":"Start detector","description":"Start data acquisition.\nDetector must be in `Idle` state.\nDoesn't run calibration procedure.\nWhen the function returns, detector is ready to accept soft/TTL triggers.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/dataset_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/wait_till_done":{"post":{"summary":"Wait for acquisition done","parameters":[{"in":"query","name":"timeout","required":false,"schema":{"type":"integer","default":60,"minimum":0,"maximum":3600},"description":"Timeout in seconds (0 == immediate response)"}],"description":"Block execution of external script till initialization, data collection or pedestal is finished.\nRunning this command does not affect (cancel) running data collection, it is only to ensure synchronous execution of other software.\n\nTo not block web server for a indefinite period of time, the procedure is provided with a timeout.\nExtending timeout is possible, but requires to ensure safety that client will not close the connection and retry the connection.\n","responses":{"200":{"description":"Detector in `Idle` state, another data collection can start immediately"},"400":{"description":"Timeout parameter out of bounds"},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}},"502":{"description":"Detector is inactive mode"},"504":{"description":"Timeout reached, need to restart operation"}}}},"/trigger":{"post":{"summary":"Send soft trigger to the detector","description":"Generate soft trigger","responses":{"200":{"description":"Trigger sent"}}}},"/cancel":{"post":{"summary":"Cancel running data collection","description":"Command will inform FPGA network card to stop pedestal or data collection at the current stage.\nAny frame that is currently being processed by CPU will be finished and sent to writer.\nGiven the command is making sure to gracefully stop data acquisition and detector, it might take some time to switch back after command finished to `Idle` state.\n\nIf data collection is not running, the command has no effect.\n","responses":{"200":{"description":"Cancel request sent to FPGAs (or ignored, as data collection is not running)"}}}},"/deactivate":{"post":{"summary":"Prepare detector to turn off","description":"Should be in `Idle` or `Error` state.\nCommand deactivates data acquisition and turns off detector high voltage and ASIC.\nShould be used always before turning off power from the detector.\n","responses":{"200":{"description":"Detector ready to turn off"},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/config/detector":{"put":{"summary":"Change detector configuration","description":"Detector settings are ones that have effect on calibration, i.e., pedestal has to be collected again after changing these settings.\nThis can only be done when detector is `Idle`, `Error` or `Inactive` states.\nIf detector is in `Idle` state , pedestal procedure will be executed automatically - there must be no X-rays on the detector during the operation.\nIf detector is in `Inactive` or `Error` states, new settings will be saved, but no calibration will be executed.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/detector_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get detector configuration","description":"Can be done anytime","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/detector_settings"}}}}}}},"/config/indexing":{"put":{"summary":"Change indexing algorithm settings","description":"This can only be done when detector is `Idle`, `Error` or `Inactive` states.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/indexing_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get indexing configuration","description":"Can be done anytime","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/indexing_settings"}}}}}}},"/config/file_writer":{"put":{"summary":"Change file writer settings","description":"This can only be done when detector is `Idle`, `Error` or `Inactive` states.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/file_writer_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get file writer settings","description":"Can be done anytime","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/file_writer_settings"}}}}}}},"/config/instrument":{"put":{"summary":"Change instrument metadata","description":"This can only be done when detector is `Idle`, `Error` or `Inactive` states.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/instrument_metadata"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get instrument metadata","description":"Can be done anytime","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/instrument_metadata"}}}}}}},"/config/image_format":{"put":{"summary":"Change image output format","description":"This can only be done when detector is `Idle`, `Error` or `Inactive` states.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/image_format_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get image output format","description":"Can be done anytime","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/image_format_settings"}}}}}}},"/config/image_format/raw":{"post":{"summary":"Configure format for raw data collection","description":"This can only be done when detector is `Idle`, `Error` or `Inactive` states.\n","responses":{"200":{"description":"Everything OK"},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/config/image_format/conversion":{"post":{"summary":"Configure format for data collection with full conversion","description":"This can only be done when detector is `Idle`, `Error` or `Inactive` states.\n","responses":{"200":{"description":"Everything OK"},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/config/spot_finding":{"put":{"summary":"Configure spot finding","description":"Can be done anytime, also while data collection is running","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/spot_finding_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}}}},"get":{"summary":"Get data processing configuration","description":"Can be done anytime","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/spot_finding_settings"}}}}}}},"/config/azim_int":{"put":{"summary":"Configure azimuthal integration","description":"Can be done when detector is Inactive or Idle","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/azim_int_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get azimuthal integration configuration","description":"Can be done anytime","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/azim_int_settings"}}}}}}},"/config/internal_generator_image":{"put":{"summary":"Load binary image for internal FPGA generator","description":"Load image for internal FPGA generator. This can only happen in Idle state of the detector.\nRequires binary blob with 16-bit integer numbers of size of detector in raw/converted coordinates \n(depending on detector settings).\n","parameters":[{"name":"id","in":"query","description":"Image id to upload","required":false,"schema":{"type":"integer","format":"int64","minimum":0,"maximum":127}}],"requestBody":{"content":{"application/octet-stream":{"schema":{"type":"string","format":"binary"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}}}}},"/config/internal_generator_image.tiff":{"put":{"summary":"Load TIFF image for internal FPGA generator","description":"Load image for internal FPGA generator. This can only happen in Idle state of the detector.\nRequires TIFF with 16-bit integer numbers of size of detector in raw/converted coordinates \n(depending on detector settings).\n","parameters":[{"in":"query","name":"id","description":"Image ID to upload","required":false,"schema":{"type":"integer","minimum":0,"maximum":127}}],"requestBody":{"content":{"image/tiff":{"schema":{"type":"string","format":"binary"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}}}}},"/config/select_detector":{"put":{"summary":"Select detector","description":"Jungfraujoch allows to control multiple detectors and/or region-of-interests.\nThe command allows to choose one detector from the list (ID has to be consistent with one provided by GET response).\nChanging detector will set detector to `Inactive` state and will require reinitialization.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/detector_selection"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"List available detectors","description":"Configured detectors that can be selected by used","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/detector_list"}}}}}}},"/config/zeromq_preview":{"put":{"summary":"Set ZeroMQ preview settings","description":"Jungfraujoch can generate preview message stream on ZeroMQ SUB socket.\nHere settings of the socket can be adjusted.\nWhile the data structure contains also socket_address, this cannot be changed via HTTP and is ignore in PUT request.\nOptions set with this PUT request have no effect on HTTP based preview.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/zeromq_preview_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get ZeroMQ preview settings","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/zeromq_preview_settings"}}}}}}},"/config/zeromq_metadata":{"put":{"summary":"Set ZeroMQ metadata settings","description":"Jungfraujoch can generate metadata message stream on ZeroMQ PUB socket. This stream covers all images.\nHere settings of the socket can be adjusted.\nWhile the data structure contains also socket_address, this cannot be changed via HTTP and is ignore in PUT request.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/zeromq_metadata_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get ZeroMQ metadata socket settings","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/zeromq_metadata_settings"}}}}}}},"/config/dark_mask":{"put":{"summary":"Set configuration for dark data collection to calculate mask","description":"This is only possible when operating DECTRIS detectors at the moment; it will be also available for PSI EIGER at some point.\nThis can only be done when detector is `Idle`, `Error` or `Inactive` states.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/dark_mask_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get settings for dark data collection to calculate mask","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/dark_mask_settings"}}}}}}},"/status":{"get":{"summary":"Get Jungfraujoch status","description":"Status of the data acquisition","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/broker_status"}}}}}}},"/fpga_status":{"get":{"summary":"Get status of FPGA devices","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/fpga_status"}}}}}}},"/xfel/pulse_id":{"get":{"summary":"Return XFEL pulse IDs for the current data acquisition","description":"Return array of XFEL pulse IDs - (-1) if image not recorded","responses":{"200":{"description":"Pulse ID collected","content":{"application/json":{"schema":{"type":"array","items":{"type":"integer","format":"int64"}}}}},"404":{"description":"Not in XFEL mode or no acquisition recorded"}}}},"/xfel/event_code":{"get":{"summary":"Return XFEL event codes for the current data acquisition","description":"Return array of XFEL event codes","responses":{"200":{"description":"Event codes collected","content":{"application/json":{"schema":{"type":"array","items":{"type":"integer","format":"int64"}}}}},"404":{"description":"Not in XFEL mode or no acquisition recorded"}}}},"/detector/status":{"get":{"summary":"Get detector status","description":"Status of the JUNGFRAU detector","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/detector_status"}}}},"404":{"description":"Running in \"simulator\" mode - no detector present"},"500":{"description":"Error encountered when trying to read status","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}}}}},"/config/roi":{"get":{"summary":"Get ROI definitions","responses":{"200":{"description":"OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/roi_definitions"}}}}}},"put":{"summary":"Upload ROI definitions","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/roi_definitions"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/statistics":{"get":{"summary":"Get general statistics","parameters":[{"$ref":"#/components/parameters/compression"}],"responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/jfjoch_statistics"}}}}}}},"/statistics/data_collection":{"get":{"summary":"Get data collection statistics","description":"Results of the last data collection","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/measurement_statistics"}}}},"404":{"description":"No data collection performed so far"}}}},"/statistics/calibration":{"get":{"summary":"Get calibration statistics","description":"Statistics are provided for each module/storage cell separately","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/calibration_statistics"}}}}}}},"/config/mask":{"get":{"summary":"Get mask of the detector (binary)","description":"Detector must be Initialized.\nGet full pixel mask of the detector.\nSee NXmx standard for meaning of pixel values.\n","responses":{"200":{"description":"Binary array (4 byte; 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adjusted\n"},"geometry_transform":{"type":"boolean","description":"Place module read-out into their location on composed detector and extend multipixels\n"},"jungfrau_conversion":{"type":"boolean","description":"Convert pixel value in ADU to photon counts/energy\nOnly affects JUNGFRAU detector\n"},"jungfrau_conversion_factor_keV":{"type":"number","format":"float","minimum":0.001,"maximum":500,"description":"Used to convert energy deposited into pixel to counts\nIf not provided incident_energy_keV is used\n"},"bit_depth_image":{"type":"integer","format":"int64","enum":[8,16,32],"description":"Bit depth of resulting image (it doesn't affect the detector read-out value)\nIf not provided value is adjusted automatically\n"},"signed_output":{"type":"boolean","description":"Controls if pixels have signed output\nIf not provided value is adjusted automatically\n"},"mask_module_edges":{"type":"boolean","default":true,"description":"Mask 1 pixel on the module 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connected"]},"detector_status":{"type":"object","required":["state","powerchip","server_version","number_of_triggers_left","fpga_temp_degC","high_voltage_V"],"properties":{"state":{"$ref":"#/components/schemas/detector_state"},"powerchip":{"$ref":"#/components/schemas/detector_power_state"},"server_version":{"type":"string","description":"Detector server (on read-out boards) version"},"number_of_triggers_left":{"type":"integer","format":"int64","description":"Remaining triggers to the detector (max of all modules)"},"fpga_temp_degC":{"type":"array","description":"Temperature of detector FPGAs","items":{"type":"integer","format":"int64"}},"high_voltage_V":{"type":"array","description":"High voltage for detector modules","items":{"type":"integer","format":"int64"}}}},"detector_timing":{"type":"string","enum":["auto","trigger","burst","gated"],"default":"trigger"},"detector_settings":{"type":"object","required":["frame_time_us"],"properties":{"frame_time_us":{"type":"integer","description":"Interval between consecutive frames.\nThis is internal frame time for the JUNGFRAU detector, image time has to be integer multiply of this number.\nFor EIGER detector this is default frame time, not used otherwise\n","format":"int64","minimum":1},"count_time_us":{"type":"integer","description":"Integration time of the detector. \nIf not provided count time will be set to maximum value for a given frame time.\n","format":"int64"},"internal_frame_generator":{"type":"boolean","default":false,"description":"Use internal frame generator in FPGA instead of getting data from a real detector"},"internal_frame_generator_images":{"type":"integer","format":"int64","default":1,"minimum":1,"maximum":64,"description":"Number of images stored in the internal frame generator."},"detector_trigger_delay_ns":{"type":"integer","format":"int64","minimum":0,"default":0,"description":"Delay between TTL trigger and acquisition start [ns]"},"timing":{"$ref":"#/components/schemas/detector_timing"},"eiger_threshold_keV":{"type":"number","format":"float","minimum":1,"maximum":100,"description":"Threshold for the PSI EIGER detector and all DECTRIS detectors.\nIf value is provided, it will be used for all subsequent acquisitions, irrespective of beam energy.\nIf value is not provided, threshold will be determined on start of acquisition as half of incident energy. \nThis might lead to increased start time.\n"},"eiger_bit_depth":{"type":"integer","format":"int64","enum":[8,16,32],"description":"Bit depth of PSI EIGER read-out. 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This is temporary setting, i.e. can be changed anytime during data collection. \nEven if disabled spot finding information will still be send and written, though always with zero spots.\n"},"indexing":{"type":"boolean","default":true,"description":"Enable indexing. This is temporary setting, i.e. can be changed anytime during data collection.\n"},"signal_to_noise_threshold":{"type":"number","format":"float","minimum":0},"photon_count_threshold":{"type":"integer","format":"int64","minimum":0},"min_pix_per_spot":{"type":"integer","format":"int64","minimum":1},"max_pix_per_spot":{"type":"integer","format":"int64","minimum":1},"high_resolution_limit":{"type":"number","format":"float","description":"High resolution limit for spot finding [Angstrom]"},"low_resolution_limit":{"type":"number","format":"float","description":"Low resolution limit for spot finding [Angstrom]"},"high_resolution_limit_for_spot_count_low_res":{"type":"number","format":"float","description":"High resolution threshold to consider spot \"low resolution\" [Angstrom]","minimum":2,"maximum":8},"quick_integration":{"type":"boolean","default":false,"description":"Quick integration of Bragg spots in diffraction images.\nIf enabled it will likely reduce performance of Jungfraujoch for datasets with a very high indexing rate.\n(experimental feature)\n"},"ice_ring_width_q_recipA":{"type":"number","format":"float","minimum":0,"maximum":1,"default":0.02,"description":"Width of ice ring in q-space in reciprocal space"},"high_res_gap_Q_recipA":{"type":"number","format":"float","minimum":0.1,"maximum":5,"default":1.5,"description":"This parameter is used to remove spurious spots at a very high resolution, that sometimes appear due to very low background close to the edge of the detector.\nIf there is a gap in (1/d)-space between spots of at least this size, spots on the side of the gap with high resolution will be discarded. 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This socket operates at a reduced frame rate.\nImages are serialized using CBOR.\nAddress follows ZeroMQ convention for sockets - in practice ipc://<socket file> and tcp://<IP address>:<port> sockets are OK.\n0.0.0.0 instead of IP address is accepted and means listening on all network interfaces.\n"}}}}},"paths":{"/initialize":{"post":{"summary":"Initialize detector and data acquisition","description":"Should be used in two cases:\n  - Detector is in `Inactive` state\n  - Detector is in `Error` state\nX-ray shutter must be closed. \nThis operation will reconfigure network interface of the detector. \nDuring operation of the detector it is recommended to use the `POST /pedestal` operation instead.\nIf storage cells are used, the execution time might be few minutes.\n\nThis is async function - one needs to use `POST /wait_till_done` to ensure operation is done.\n","responses":{"200":{"description":"Initialization started"},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/pedestal":{"post":{"summary":"Collect dark current for the detector","description":"Updates calibration of the JUNGFRAU detector. Must be in `Idle` state.\n\nX-ray shutter must be closed. Recommended to run once per hour for long integration times (> 100 us).\n\nThis is async function - one needs to use `POST /wait_till_done` to ensure operation is done.\n","responses":{"200":{"description":"Everything OK"},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/start":{"post":{"summary":"Start detector","description":"Start data acquisition.\nDetector must be in `Idle` state.\nDoesn't run calibration procedure.\nWhen the function returns, detector is ready to accept soft/TTL triggers.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/dataset_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/wait_till_done":{"post":{"summary":"Wait for acquisition done","parameters":[{"in":"query","name":"timeout","required":false,"schema":{"type":"integer","default":60,"minimum":0,"maximum":3600},"description":"Timeout in seconds (0 == immediate response)"}],"description":"Block execution of external script till initialization, data collection or pedestal is finished.\nRunning this command does not affect (cancel) running data collection, it is only to ensure synchronous execution of other software.\n\nTo not block web server for a indefinite period of time, the procedure is provided with a timeout.\nExtending timeout is possible, but requires to ensure safety that client will not close the connection and retry the connection.\n","responses":{"200":{"description":"Detector in `Idle` state, another data collection can start immediately"},"400":{"description":"Timeout parameter out of bounds"},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}},"502":{"description":"Detector is inactive mode"},"504":{"description":"Timeout reached, need to restart operation"}}}},"/trigger":{"post":{"summary":"Send soft trigger to the detector","description":"Generate soft trigger","responses":{"200":{"description":"Trigger sent"}}}},"/cancel":{"post":{"summary":"Cancel running data collection","description":"Command will inform FPGA network card to stop pedestal or data collection at the current stage.\nAny frame that is currently being processed by CPU will be finished and sent to writer.\nGiven the command is making sure to gracefully stop data acquisition and detector, it might take some time to switch back after command finished to `Idle` state.\n\nIf data collection is not running, the command has no effect.\n","responses":{"200":{"description":"Cancel request sent to FPGAs (or ignored, as data collection is not running)"}}}},"/deactivate":{"post":{"summary":"Prepare detector to turn off","description":"Should be in `Idle` or `Error` state.\nCommand deactivates data acquisition and turns off detector high voltage and ASIC.\nShould be used always before turning off power from the detector.\n","responses":{"200":{"description":"Detector ready to turn off"},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/config/detector":{"put":{"summary":"Change detector configuration","description":"Detector settings are ones that have effect on calibration, i.e., pedestal has to be collected again after changing these settings.\nThis can only be done when detector is `Idle`, `Error` or `Inactive` states.\nIf detector is in `Idle` state , pedestal procedure will be executed automatically - there must be no X-rays on the detector during the operation.\nIf detector is in `Inactive` or `Error` states, new settings will be saved, but no calibration will be executed.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/detector_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get detector configuration","description":"Can be done anytime","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/detector_settings"}}}}}}},"/config/indexing":{"put":{"summary":"Change indexing algorithm settings","description":"This can only be done when detector is `Idle`, `Error` or `Inactive` states.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/indexing_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get indexing configuration","description":"Can be done anytime","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/indexing_settings"}}}}}}},"/config/file_writer":{"put":{"summary":"Change file writer settings","description":"This can only be done when detector is `Idle`, `Error` or `Inactive` states.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/file_writer_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get file writer settings","description":"Can be done anytime","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/file_writer_settings"}}}}}}},"/config/instrument":{"put":{"summary":"Change instrument metadata","description":"This can only be done when detector is `Idle`, `Error` or `Inactive` states.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/instrument_metadata"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get instrument metadata","description":"Can be done anytime","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/instrument_metadata"}}}}}}},"/config/image_format":{"put":{"summary":"Change image output format","description":"This can only be done when detector is `Idle`, `Error` or `Inactive` states.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/image_format_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get image output format","description":"Can be done anytime","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/image_format_settings"}}}}}}},"/config/image_format/raw":{"post":{"summary":"Configure format for raw data collection","description":"This can only be done when detector is `Idle`, `Error` or `Inactive` states.\n","responses":{"200":{"description":"Everything OK"},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/config/image_format/conversion":{"post":{"summary":"Configure format for data collection with full conversion","description":"This can only be done when detector is `Idle`, `Error` or `Inactive` states.\n","responses":{"200":{"description":"Everything OK"},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/config/spot_finding":{"put":{"summary":"Configure spot finding","description":"Can be done anytime, also while data collection is running","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/spot_finding_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}}}},"get":{"summary":"Get data processing configuration","description":"Can be done anytime","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/spot_finding_settings"}}}}}}},"/config/azim_int":{"put":{"summary":"Configure azimuthal integration","description":"Can be done when detector is Inactive or Idle","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/azim_int_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get azimuthal integration configuration","description":"Can be done anytime","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/azim_int_settings"}}}}}}},"/config/internal_generator_image":{"put":{"summary":"Load binary image for internal FPGA generator","description":"Load image for internal FPGA generator. This can only happen in Idle state of the detector.\nRequires binary blob with 16-bit integer numbers of size of detector in raw/converted coordinates \n(depending on detector settings).\n","parameters":[{"name":"id","in":"query","description":"Image id to upload","required":false,"schema":{"type":"integer","format":"int64","minimum":0,"maximum":127}}],"requestBody":{"content":{"application/octet-stream":{"schema":{"type":"string","format":"binary"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}}}}},"/config/internal_generator_image.tiff":{"put":{"summary":"Load TIFF image for internal FPGA generator","description":"Load image for internal FPGA generator. This can only happen in Idle state of the detector.\nRequires TIFF with 16-bit integer numbers of size of detector in raw/converted coordinates \n(depending on detector settings).\n","parameters":[{"in":"query","name":"id","description":"Image ID to upload","required":false,"schema":{"type":"integer","minimum":0,"maximum":127}}],"requestBody":{"content":{"image/tiff":{"schema":{"type":"string","format":"binary"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}}}}},"/config/select_detector":{"put":{"summary":"Select detector","description":"Jungfraujoch allows to control multiple detectors and/or region-of-interests.\nThe command allows to choose one detector from the list (ID has to be consistent with one provided by GET response).\nChanging detector will set detector to `Inactive` state and will require reinitialization.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/detector_selection"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"List available detectors","description":"Configured detectors that can be selected by used","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/detector_list"}}}}}}},"/config/zeromq_preview":{"put":{"summary":"Set ZeroMQ preview settings","description":"Jungfraujoch can generate preview message stream on ZeroMQ SUB socket.\nHere settings of the socket can be adjusted.\nWhile the data structure contains also socket_address, this cannot be changed via HTTP and is ignore in PUT request.\nOptions set with this PUT request have no effect on HTTP based preview.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/zeromq_preview_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get ZeroMQ preview settings","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/zeromq_preview_settings"}}}}}}},"/config/zeromq_metadata":{"put":{"summary":"Set ZeroMQ metadata settings","description":"Jungfraujoch can generate metadata message stream on ZeroMQ PUB socket. This stream covers all images.\nHere settings of the socket can be adjusted.\nWhile the data structure contains also socket_address, this cannot be changed via HTTP and is ignore in PUT request.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/zeromq_metadata_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get ZeroMQ metadata socket settings","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/zeromq_metadata_settings"}}}}}}},"/config/dark_mask":{"put":{"summary":"Set configuration for dark data collection to calculate mask","description":"This is only possible when operating DECTRIS detectors at the moment; it will be also available for PSI EIGER at some point.\nThis can only be done when detector is `Idle`, `Error` or `Inactive` states.\n","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/dark_mask_settings"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}},"get":{"summary":"Get settings for dark data collection to calculate mask","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/dark_mask_settings"}}}}}}},"/status":{"get":{"summary":"Get Jungfraujoch status","description":"Status of the data acquisition","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/broker_status"}}}}}}},"/fpga_status":{"get":{"summary":"Get status of FPGA devices","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/fpga_status"}}}}}}},"/xfel/pulse_id":{"get":{"summary":"Return XFEL pulse IDs for the current data acquisition","description":"Return array of XFEL pulse IDs - (-1) if image not recorded","responses":{"200":{"description":"Pulse ID collected","content":{"application/json":{"schema":{"type":"array","items":{"type":"integer","format":"int64"}}}}},"404":{"description":"Not in XFEL mode or no acquisition recorded"}}}},"/xfel/event_code":{"get":{"summary":"Return XFEL event codes for the current data acquisition","description":"Return array of XFEL event codes","responses":{"200":{"description":"Event codes collected","content":{"application/json":{"schema":{"type":"array","items":{"type":"integer","format":"int64"}}}}},"404":{"description":"Not in XFEL mode or no acquisition recorded"}}}},"/detector/status":{"get":{"summary":"Get detector status","description":"Status of the JUNGFRAU detector","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/detector_status"}}}},"404":{"description":"Running in \"simulator\" mode - no detector present"},"500":{"description":"Error encountered when trying to read status","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}}}}},"/config/roi":{"get":{"summary":"Get ROI definitions","responses":{"200":{"description":"OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/roi_definitions"}}}}}},"put":{"summary":"Upload ROI definitions","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/roi_definitions"}}}},"responses":{"200":{"description":"Everything OK"},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/statistics":{"get":{"summary":"Get general statistics","parameters":[{"$ref":"#/components/parameters/compression"}],"responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/jfjoch_statistics"}}}}}}},"/statistics/data_collection":{"get":{"summary":"Get data collection statistics","description":"Results of the last data collection","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/measurement_statistics"}}}},"404":{"description":"No data collection performed so far"}}}},"/statistics/calibration":{"get":{"summary":"Get calibration statistics","description":"Statistics are provided for each module/storage cell separately","responses":{"200":{"description":"Everything OK","content":{"application/json":{"schema":{"$ref":"#/components/schemas/calibration_statistics"}}}}}}},"/config/mask":{"get":{"summary":"Get mask of the detector (binary)","description":"Detector must be Initialized.\nGet full pixel mask of the detector.\nSee NXmx standard for meaning of pixel values.\n","responses":{"200":{"description":"Binary array (4 byte; unsigned)","content":{"application/octet-stream":{"schema":{"type":"string","format":"binary"}}}}}}},"/config/user_mask":{"get":{"summary":"Detector must be Initialized.\nGet user mask of the detector (binary)\n","description":"Get user pixel mask of the detector in the actual detector coordinates: 0 - good pixel, 1 - masked","responses":{"200":{"description":"User mask in binary format (4 byte; unsigned)","content":{"application/octet-stream":{"schema":{"type":"string","format":"binary"}}}}}},"put":{"summary":"Upload user mask of the detector (binary)","description":"Should be in `Idle` state.\nUpload user mask of the detector - this is for example to account for beam stop shadow or misbehaving regions.\nIf detector is conversion mode the mask can be both in raw (1024x512; stacked modules) or converted coordinates.\nIn the latter case - module gaps are ignored and don't need to be assigned value.\nMask is expected as binary array (4-byte; unsigned).\n0 - good pixel, other value - masked\nUser mask is stored in NXmx pixel mask (bit 8), as well as used in spot finding and azimuthal integration.\n","requestBody":{"content":{"application/octet-stream":{"schema":{"type":"string","format":"binary"}}}},"responses":{"200":{"description":"All good"},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/config/mask.tiff":{"get":{"summary":"Get mask of the detector (TIFF)","description":"Should be in `Idle` state.\nGet full pixel mask of the detector\nSee NXmx standard for meaning of pixel values\n","responses":{"200":{"description":"Pixel mask in TIFF format (4 byte; unsigned)","content":{"image/tiff":{"schema":{"type":"string","format":"binary"}}}}}}},"/config/user_mask.tiff":{"get":{"summary":"Detector must be Initialized.\nGet user mask of the detector (TIFF)\n","description":"Get user pixel mask of the detector in the actual detector coordinates: 0 - good pixel, 1 - masked","responses":{"200":{"description":"User mask in TIFF format (4 byte; unsigned)","content":{"image/tiff":{"schema":{"type":"string","format":"binary"}}}}}},"put":{"summary":"Upload user mask of the detector","description":"Should be in `Idle` state.\nUpload user mask of the detector - this is for example to account for beam stop shadow or misbehaving regions.\nIf detector is conversion mode the mask can be both in raw (1024x512; stacked modules) or converted coordinates.\nIn the latter case - module gaps are ignored and don't need to be assigned value.\nMask is expected as TIFF (4-byte; unsigned).\n0 - good pixel, other value - masked\nUser mask is stored in NXmx pixel mask (bit 8), as well as used in spot finding and azimuthal integration. \nUser mask is not automatically applied - i.e. pixels with user mask will have a valid pixel value in the images.\n","requestBody":{"content":{"image/tiff":{"schema":{"type":"string","format":"binary"}}}},"responses":{"200":{"description":"All good"},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/preview/pedestal.tiff":{"get":{"parameters":[{"in":"query","name":"gain_level","required":true,"schema":{"type":"integer"},"description":"Gain level (0, 1, 2)"},{"in":"query","name":"sc","schema":{"type":"integer"},"description":"Storage cell number"}],"summary":"Get pedestal in TIFF format","responses":{"200":{"description":"Calibration image","content":{"image/tiff":{"schema":{"type":"string","format":"binary"}}}},"404":{"description":"No calibration recorded so far"}}}},"/preview/plot":{"get":{"summary":"Generate 1D plot from Jungfraujoch","parameters":[{"$ref":"#/components/parameters/binning"},{"$ref":"#/components/parameters/compression"},{"$ref":"#/components/parameters/plot_type"},{"$ref":"#/components/parameters/fill_value"},{"$ref":"#/components/parameters/experimental_coord"},{"$ref":"#/components/parameters/azint_unit"}],"responses":{"200":{"description":"Everything OK.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/plots"}}}},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}}}}},"/preview/plot.bin":{"get":{"summary":"Generate 1D plot from Jungfraujoch and send in raw binary format.\nData are provided as (32-bit) float binary array.\nThis format doesn't transmit information about X-axis, only values, so it is of limited use for azimuthal integration.\n","parameters":[{"$ref":"#/components/parameters/plot_type"},{"$ref":"#/components/parameters/roi"}],"responses":{"200":{"description":"Everything OK.","content":{"application/octet-stream":{"schema":{"type":"string","format":"binary"}}}},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}}}}},"/result/scan":{"get":{"summary":"Get full scan result","responses":{"200":{"description":"Everything OK.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/scan_result"}}}},"404":{"description":"No grid scan recorded"},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/image_buffer/start.cbor":{"get":{"summary":"Get Start message in CBOR format","description":"Contains metadata for a dataset (e.g., experimental geometry)","responses":{"200":{"description":"Return start message","content":{"application/cbor":{"schema":{"type":"string","format":"binary"}}}},"404":{"description":"No measurement so far"},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/image_buffer/image.cbor":{"get":{"summary":"Get image message in CBOR format","description":"Contains full image data and metadata. The image must come from the latest data collection.","parameters":[{"$ref":"#/components/parameters/image_id"}],"responses":{"200":{"description":"Return image message","content":{"application/cbor":{"schema":{"type":"string","format":"binary"}}}},"404":{"description":"Image not present in the buffer - either not yet measured or already replaced by a next image."},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/image_buffer/image.jpeg":{"get":{"summary":"Get preview image in JPEG format using custom settings","parameters":[{"$ref":"#/components/parameters/image_id"},{"$ref":"#/components/parameters/show_user_mask"},{"$ref":"#/components/parameters/show_roi"},{"$ref":"#/components/parameters/show_spots"},{"$ref":"#/components/parameters/show_beam_center"},{"$ref":"#/components/parameters/saturation"},{"$ref":"#/components/parameters/jpeg_quality"},{"$ref":"#/components/parameters/resolution_ring"},{"$ref":"#/components/parameters/color_scale"},{"$ref":"#/components/parameters/resolution_estimate"}],"responses":{"200":{"description":"Preview image","content":{"image/jpeg":{"schema":{"type":"string","format":"binary"}}}},"400":{"description":"Input parsing or validation error","content":{"text/plain":{"schema":{"type":"string","description":"Exception error"}}}},"404":{"description":"Image not present in the buffer - either not yet measured or already replaced by a next image."},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/image_buffer/image.tiff":{"get":{"summary":"Get preview image in TIFF format","parameters":[{"$ref":"#/components/parameters/image_id"}],"responses":{"200":{"description":"Preview image","content":{"image/tiff":{"schema":{"type":"string","format":"binary"}}}},"404":{"description":"No preview image recorded so far"}}}},"/image_buffer/clear":{"post":{"summary":"Clear image buffer","description":"Turns off image buffer for the last data collection. Can be only run when Jungfraujoch is not collecting data.","responses":{"200":{"description":"Done"},"500":{"description":"Error within Jungfraujoch code - see output message.","content":{"application/json":{"schema":{"$ref":"#/components/schemas/error_message"}}}}}}},"/image_buffer/status":{"get":{"summary":"Get status of the image buffers","description":"Can be run at any stage of Jungfraujoch operation, including during data collection.\nThe status of the image buffer is volatile during data collection - if data collection goes for more images than available buffer slots,\nthen image might be replaced in the buffer between calling /images and /image.cbor.\n","responses":{"200":{"description":"Done","content":{"application/json":{"schema":{"$ref":"#/components/schemas/image_buffer_status"}}}},"500":{"description":"Error within Jungfraujoch code - see output 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
       var container = document.getElementById('redoc');
       Redoc.hydrate(__redoc_state, container);
diff --git a/common/ColorScale.cpp b/common/ColorScale.cpp
index dd30897a..117388b3 100644
--- a/common/ColorScale.cpp
+++ b/common/ColorScale.cpp
@@ -61,6 +61,10 @@ void ColorScale::CalcLUT() const {
         case ColorScaleEnum::Green3:
             map = &green_colormap;
             break;
+        case ColorScaleEnum::Magma:
+            map = &magma_colormap; break;
+        case ColorScaleEnum::Inferno:
+            map = &inferno_colormap; break;
         default:
             throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
                                   "Color scale unknown");
diff --git a/common/ColorScale.h b/common/ColorScale.h
index af862232..e0395937 100644
--- a/common/ColorScale.h
+++ b/common/ColorScale.h
@@ -18,14 +18,16 @@ struct rgb {
 float luminance(rgb input);
 
 enum class ColorScaleEnum : int {
-    Viridis = 0,
-    Heat = 1,
-    Indigo = 2,
-    BW = 3,
-    WB = 4,
-    Green1 = 5,
-    Green2 = 6,
-    Green3 = 7
+    Indigo = 0,
+    Viridis = 1,
+    Magma = 2,
+    Inferno = 3,
+    Heat = 4,
+    BW = 5,
+    WB = 6,
+    Green1 = 7,
+    Green2 = 8,
+    Green3 = 9
 };
 
 enum class ColorScaleSpecial {
@@ -59,6 +61,16 @@ class ColorScale {
         {0, 0, 0}, {0, 255, 0}
     };
 
+    const std::vector<rgb> magma_colormap = {
+        {0, 0, 4}, {28, 16, 68}, {79, 18, 123}, {129, 37, 129},
+        {181, 54, 122}, {229, 80, 100}, {251, 135, 97}, {252, 191, 125}, {252, 253, 191}
+    };
+
+    const std::vector<rgb> inferno_colormap = {
+        {0, 0, 4}, {31, 12, 72}, {85, 15, 109}, {136, 34, 106},
+        {186, 54, 85}, {227, 89, 51}, {249, 140, 10}, {252, 195, 63}, {252, 255, 164}
+    };
+
     ColorScaleEnum current = ColorScaleEnum::Indigo;
 
     rgb gap = {.r = 190, .g = 190, .b = 190}; // Gray
diff --git a/docs/ACKNOWLEDGEMENT.md b/docs/ACKNOWLEDGEMENT.md
index 52f520b8..56807b32 100644
--- a/docs/ACKNOWLEDGEMENT.md
+++ b/docs/ACKNOWLEDGEMENT.md
@@ -7,4 +7,4 @@ The project is supported by :
 * ETH Domain via Open Research Data Contribute project (Jan - Dec 2023)
 * AMD University Program with donation of licenses of Ethernet IP cores and Vivado software
 
-This software uses Viridis colormap from Matplotlib under its BSD-compatible license
+This software uses Viridis, Magma and Inferno colormaps from Matplotlib under its BSD-compatible license
diff --git a/frontend/package-lock.json b/frontend/package-lock.json
index 0e2f8c4c..83908720 100644
--- a/frontend/package-lock.json
+++ b/frontend/package-lock.json
@@ -1,12 +1,12 @@
 {
   "name": "jungfraujoch-frontend",
-  "version": "1.0.0-rc.122",
+  "version": "1.0.0-rc.123",
   "lockfileVersion": 3,
   "requires": true,
   "packages": {
     "": {
       "name": "jungfraujoch-frontend",
-      "version": "1.0.0-rc.122",
+      "version": "1.0.0-rc.123",
       "license": "GPL-3.0",
       "dependencies": {
         "@emotion/react": "^11.10.4",
diff --git a/frontend/src/components/PreviewImage.tsx b/frontend/src/components/PreviewImage.tsx
index fe58bccf..de732a9a 100644
--- a/frontend/src/components/PreviewImage.tsx
+++ b/frontend/src/components/PreviewImage.tsx
@@ -405,7 +405,11 @@ class PreviewImage extends Component<MyProps, MyState> {
                                     <MenuItem value={color_scale.INDIGO}>Indigo/white</MenuItem>
                                     <MenuItem value={color_scale.HEAT}>Heat</MenuItem>
                                     <MenuItem value={color_scale.VIRIDIS}>Viridis</MenuItem>
+                                    <MenuItem value={color_scale.MAGMA}>Magma</MenuItem>
+                                    <MenuItem value={color_scale.INFERNO}>Inferno</MenuItem>
                                     <MenuItem value={color_scale.BW}>Black/white</MenuItem>
+                                    <MenuItem value={color_scale.WB}>White/black</MenuItem>
+                                    <MenuItem value={color_scale.GREEN}>Green</MenuItem>
                                 </Select>
                             </FormControl>
                             <Stack spacing={3} direction="row" sx={{width:"83%"}}>
diff --git a/frontend/src/openapi/models/color_scale.ts b/frontend/src/openapi/models/color_scale.ts
index 72e82d7e..500c0d56 100644
--- a/frontend/src/openapi/models/color_scale.ts
+++ b/frontend/src/openapi/models/color_scale.ts
@@ -10,5 +10,9 @@ export enum color_scale {
     INDIGO = 'indigo',
     VIRIDIS = 'viridis',
     BW = 'bw',
+    WB = 'wb',
+    GREEN = 'green',
     HEAT = 'heat',
+    MAGMA = 'magma',
+    INFERNO = 'inferno',
 }
diff --git a/frontend/src/openapi/services/DefaultService.ts b/frontend/src/openapi/services/DefaultService.ts
index be9754c1..ecf059db 100644
--- a/frontend/src/openapi/services/DefaultService.ts
+++ b/frontend/src/openapi/services/DefaultService.ts
@@ -1122,7 +1122,7 @@ export class DefaultService {
         saturation?: number,
         jpegQuality: number = 100,
         showResRing: number = 0.1,
-        color: 'indigo' | 'viridis' | 'bw' | 'heat' = 'indigo',
+        color: 'indigo' | 'viridis' | 'bw' | 'wb' | 'green' | 'heat' | 'magma' | 'inferno' = 'indigo',
         showResEst: boolean = false,
     ): CancelablePromise<Blob> {
         return __request(OpenAPI, {
diff --git a/viewer/toolbar/JFJochViewerToolbarDisplay.cpp b/viewer/toolbar/JFJochViewerToolbarDisplay.cpp
index a907c335..7d60f8be 100644
--- a/viewer/toolbar/JFJochViewerToolbarDisplay.cpp
+++ b/viewer/toolbar/JFJochViewerToolbarDisplay.cpp
@@ -22,9 +22,11 @@ JFJochViewerToolbarDisplay::JFJochViewerToolbarDisplay(QWidget *parent)
 
     // Initialize QComboBox with the options
     color_map_select = new QComboBox(this);
-    color_map_select->addItem("Viridis", static_cast<int>(ColorScaleEnum::Viridis));
-    color_map_select->addItem("Heat", static_cast<int>(ColorScaleEnum::Heat));
     color_map_select->addItem("Indigo", static_cast<int>(ColorScaleEnum::Indigo));
+    color_map_select->addItem("Viridis", static_cast<int>(ColorScaleEnum::Viridis));
+    color_map_select->addItem("Magma", static_cast<int>(ColorScaleEnum::Magma));
+    color_map_select->addItem("Inferno", static_cast<int>(ColorScaleEnum::Inferno));
+    color_map_select->addItem("Heat", static_cast<int>(ColorScaleEnum::Heat));
     color_map_select->addItem("Black on white", static_cast<int>(ColorScaleEnum::BW));
     color_map_select->addItem("White on black", static_cast<int>(ColorScaleEnum::WB));
     color_map_select->addItem("Green (gamma)", static_cast<int>(ColorScaleEnum::Green1));