diff --git a/broker/JFJochStateMachine.cpp b/broker/JFJochStateMachine.cpp index 306e4a3e..bbaf27dc 100644 --- a/broker/JFJochStateMachine.cpp +++ b/broker/JFJochStateMachine.cpp @@ -326,20 +326,18 @@ void JFJochStateMachine::SetFullMeasurementOutput(JFJochProtoBuf::BrokerFullStat tmp.set_bkg_estimate(output.receiver().bkg_estimate()); } + double writer_perf = 0.0; + int64_t images_written = 0; if (last_receiver_output.writer_size() > 0) { - double writer_perf = 0.0; - int64_t images_written = 0; - for (const auto &i: output.writer()) { writer_perf += i.performance_mbs(); images_written += i.nimages(); for (const auto &f: i.file_statistics()) *tmp.add_file_statistics() = f; } - - tmp.set_writer_performance_mbs(writer_perf); - tmp.set_images_written(images_written); } + tmp.set_writer_performance_mbs(writer_perf); + tmp.set_images_written(images_written); measurement_statistics = tmp; } @@ -507,12 +505,9 @@ JFJochProtoBuf::BrokerStatus JFJochStateMachine::GetStatus() const { try { auto rcv_status = services.GetReceiverStatus(); - if (rcv_status.has_progress()) - ret.set_progress(rcv_status.progress()); - if (rcv_status.has_indexing_rate()) - ret.set_indexing_rate(rcv_status.indexing_rate()); - if (rcv_status.has_send_buffers_avail()) - ret.set_receiver_send_buffers_avail(rcv_status.send_buffers_avail()); + ret.set_progress(rcv_status.progress()); + ret.set_indexing_rate(rcv_status.indexing_rate()); + ret.set_receiver_send_buffers_avail(rcv_status.send_buffers_avail()); } catch (JFJochException &e) {} // ignore exception in getting receiver status (don't really care, e.g. if receiver is down) return ret; diff --git a/common/DiffractionExperiment.cpp b/common/DiffractionExperiment.cpp index a6441b8f..a3f0f020 100644 --- a/common/DiffractionExperiment.cpp +++ b/common/DiffractionExperiment.cpp @@ -914,14 +914,14 @@ void DiffractionExperiment::CheckDataProcessingSettings(const JFJochProtoBuf::Da check_min("Maximum pixels per spot", settings.max_pix_per_spot(), settings.min_pix_per_spot() + 1); check_min("Local background size", settings.local_bkg_size(), 2); check_max("Local background size", settings.local_bkg_size(), 7); - if (settings.has_high_resolution_limit()) { + if (settings.high_resolution_limit() > 0) { check_min("Spot finding high resolution limit", settings.high_resolution_limit(), 0.5); check_max("Spot finding high resolution limit", settings.high_resolution_limit(), 50.0); - if (settings.has_low_resolution_limit()) { + if (settings.low_resolution_limit() > 0) { check_min("Spot finding low resolution limit", settings.low_resolution_limit(), settings.high_resolution_limit()); } - } else if (settings.has_low_resolution_limit()) { + } else if (settings.low_resolution_limit() > 0) { check_min("Spot finding low resolution limit", settings.low_resolution_limit(), 1.0); check_max("Spot finding low resolution limit", settings.low_resolution_limit(), 50.0); } diff --git a/grpc/jfjoch.proto b/grpc/jfjoch.proto index 2813ad49..c675ddda 100644 --- a/grpc/jfjoch.proto +++ b/grpc/jfjoch.proto @@ -243,9 +243,9 @@ message ReceiverNetworkConfig { } message ReceiverStatus { - optional float progress = 1; - optional float indexing_rate = 3; - optional float send_buffers_avail = 4; + float progress = 1; + float indexing_rate = 3; + float send_buffers_avail = 4; } enum PlotType { @@ -342,8 +342,8 @@ message DataProcessingSettings { int64 min_pix_per_spot = 3; // Minimum pixels per spot int64 max_pix_per_spot = 4; // Maximum pixels per spot int64 local_bkg_size = 5; // NBX/NBY parameter - optional float high_resolution_limit = 6; - optional float low_resolution_limit = 7; + float high_resolution_limit = 6; + float low_resolution_limit = 7; float bkg_estimate_low_q = 8; float bkg_estimate_high_q = 9; bool preview_indexed_only = 10; @@ -388,8 +388,8 @@ message MeasurementStatistics { bool cancelled = 6; int64 max_receive_delay = 7; - optional float writer_performance_MBs = 8; - optional int64 images_written = 9; + float writer_performance_MBs = 8; + int64 images_written = 9; float indexing_rate = 10; @@ -404,9 +404,9 @@ message MeasurementStatistics { message BrokerStatus { State broker_state = 1; - optional float progress = 2; - optional float indexing_rate = 3; - optional float receiver_send_buffers_avail = 4; + float progress = 2; + float indexing_rate = 3; + float receiver_send_buffers_avail = 4; } message BrokerFullStatus { diff --git a/image_analysis/StrongPixelSet.cpp b/image_analysis/StrongPixelSet.cpp index 5aeebaa9..da355d46 100644 --- a/image_analysis/StrongPixelSet.cpp +++ b/image_analysis/StrongPixelSet.cpp @@ -100,8 +100,8 @@ void StrongPixelSet::FindSpots(const DiffractionExperiment &experiment, const JF if ((spot.PixelCount() <= settings.max_pix_per_spot()) && (spot.PixelCount() >= settings.min_pix_per_spot()) - && (!settings.has_low_resolution_limit() || (d <= settings.low_resolution_limit())) - && (!settings.has_high_resolution_limit() || (d >= settings.high_resolution_limit()))) + && ((settings.low_resolution_limit() < 0) || (d <= settings.low_resolution_limit())) + && ((settings.high_resolution_limit() < 0) || (d >= settings.high_resolution_limit()))) spots_map.insert(std::make_pair(-static_cast(d), spot)); } diff --git a/python/jfjoch_pb2.py b/python/jfjoch_pb2.py index 24c545e1..9a00a9c8 100644 --- a/python/jfjoch_pb2.py +++ b/python/jfjoch_pb2.py @@ -13,25 +13,25 @@ _sym_db = _symbol_database.Default() -DESCRIPTOR = _descriptor_pool.Default().AddSerializedFile(b'\n\x0cjfjoch.proto\x12\x0eJFJochProtoBuf\"\x07\n\x05\x45mpty\"W\n\x08UnitCell\x12\t\n\x01\x61\x18\x01 \x01(\x02\x12\t\n\x01\x62\x18\x02 \x01(\x02\x12\t\n\x01\x63\x18\x03 \x01(\x02\x12\r\n\x05\x61lpha\x18\x04 \x01(\x02\x12\x0c\n\x04\x62\x65ta\x18\x05 \x01(\x02\x12\r\n\x05gamma\x18\x06 \x01(\x02\")\n\x06Vector\x12\t\n\x01x\x18\x01 \x01(\x02\x12\t\n\x01y\x18\x02 \x01(\x02\x12\t\n\x01z\x18\x03 \x01(\x02\"|\n\x10RotationSettings\x12\x17\n\x0fstart_angle_deg\x18\x01 \x01(\x02\x12 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_builder.BuildMessageAndEnumDescriptors(DESCRIPTOR, globals()) _builder.BuildTopDescriptorsAndMessages(DESCRIPTOR, 'jfjoch_pb2', globals()) if _descriptor._USE_C_DESCRIPTORS == False: DESCRIPTOR._options = None - _COMPRESSION._serialized_start=6865 - _COMPRESSION._serialized_end=6949 - _DETECTORMODE._serialized_start=6951 - _DETECTORMODE._serialized_end=7041 - _FPGAFIFOSTATUSENUM._serialized_start=7043 - _FPGAFIFOSTATUSENUM._serialized_end=7097 - _STATE._serialized_start=7099 - _STATE._serialized_end=7193 - _FPGAPIXELOUTPUT._serialized_start=7195 - _FPGAPIXELOUTPUT._serialized_end=7268 - _PLOTTYPE._serialized_start=7270 - _PLOTTYPE._serialized_end=7393 + _COMPRESSION._serialized_start=6600 + _COMPRESSION._serialized_end=6684 + _DETECTORMODE._serialized_start=6686 + _DETECTORMODE._serialized_end=6776 + _FPGAFIFOSTATUSENUM._serialized_start=6778 + _FPGAFIFOSTATUSENUM._serialized_end=6832 + _STATE._serialized_start=6834 + _STATE._serialized_end=6928 + _FPGAPIXELOUTPUT._serialized_start=6930 + _FPGAPIXELOUTPUT._serialized_end=7003 + _PLOTTYPE._serialized_start=7005 + _PLOTTYPE._serialized_end=7128 _EMPTY._serialized_start=32 _EMPTY._serialized_end=39 _UNITCELL._serialized_start=41 @@ -72,58 +72,58 @@ if _descriptor._USE_C_DESCRIPTORS == False: _RECEIVERNETWORKCONFIGDEVICE._serialized_end=3416 _RECEIVERNETWORKCONFIG._serialized_start=3418 _RECEIVERNETWORKCONFIG._serialized_end=3502 - _RECEIVERSTATUS._serialized_start=3505 - _RECEIVERSTATUS._serialized_end=3659 - _PLOTREQUEST._serialized_start=3661 - _PLOTREQUEST._serialized_end=3731 - _RADIALINTEGRATIONPROFILE._serialized_start=3733 - _RADIALINTEGRATIONPROFILE._serialized_end=3810 - _RADIALINTEGRATIONPROFILES._serialized_start=3812 - _RADIALINTEGRATIONPROFILES._serialized_end=3899 - _WRITERINPUT._serialized_start=3901 - _WRITERINPUT._serialized_end=3963 - _DATAFILESTATISTICS._serialized_start=3965 - _DATAFILESTATISTICS._serialized_end=4016 - _WRITEROUTPUT._serialized_start=4019 - _WRITEROUTPUT._serialized_end=4160 - _DETECTORMODULECONFIG._serialized_start=4163 - _DETECTORMODULECONFIG._serialized_end=4421 - _DETECTORCONFIG._serialized_start=4423 - _DETECTORCONFIG._serialized_end=4548 - _DETECTORINPUT._serialized_start=4551 - _DETECTORINPUT._serialized_end=4803 - _DETECTOROUTPUT._serialized_start=4805 - _DETECTOROUTPUT._serialized_end=4821 - _DETECTORSTATUS._serialized_start=4823 - _DETECTORSTATUS._serialized_end=4921 - _FPGAFIFOSTATUS._serialized_start=4923 - _FPGAFIFOSTATUS._serialized_end=5004 - _DATAPROCESSINGSETTINGS._serialized_start=5007 - _DATAPROCESSINGSETTINGS._serialized_end=5383 - _MODULESTATISTICS._serialized_start=5386 - _MODULESTATISTICS._serialized_end=5623 - _IMAGE._serialized_start=5625 - _IMAGE._serialized_end=5698 - _MASKTOLOAD._serialized_start=5700 - _MASKTOLOAD._serialized_end=5746 - _MEASUREMENTSTATISTICS._serialized_start=5749 - _MEASUREMENTSTATISTICS._serialized_end=6251 - _BROKERSTATUS._serialized_start=6254 - _BROKERSTATUS._serialized_end=6469 - _BROKERFULLSTATUS._serialized_start=6472 - _BROKERFULLSTATUS._serialized_end=6636 - _DETECTORLISTELEMENT._serialized_start=6638 - _DETECTORLISTELEMENT._serialized_end=6710 - _DETECTORLIST._serialized_start=6712 - _DETECTORLIST._serialized_end=6830 - _DETECTORSELECTION._serialized_start=6832 - _DETECTORSELECTION._serialized_end=6863 - _GRPC_JFJOCHRECEIVER._serialized_start=7396 - _GRPC_JFJOCHRECEIVER._serialized_end=8089 - _GRPC_JFJOCHWRITER._serialized_start=8092 - _GRPC_JFJOCHWRITER._serialized_end=8294 - _GRPC_JFJOCHDETECTOR._serialized_start=8297 - _GRPC_JFJOCHDETECTOR._serialized_end=8683 - _GRPC_JFJOCHBROKER._serialized_start=8686 - _GRPC_JFJOCHBROKER._serialized_end=10306 + _RECEIVERSTATUS._serialized_start=3504 + _RECEIVERSTATUS._serialized_end=3589 + _PLOTREQUEST._serialized_start=3591 + _PLOTREQUEST._serialized_end=3661 + _RADIALINTEGRATIONPROFILE._serialized_start=3663 + _RADIALINTEGRATIONPROFILE._serialized_end=3740 + _RADIALINTEGRATIONPROFILES._serialized_start=3742 + _RADIALINTEGRATIONPROFILES._serialized_end=3829 + _WRITERINPUT._serialized_start=3831 + _WRITERINPUT._serialized_end=3893 + _DATAFILESTATISTICS._serialized_start=3895 + _DATAFILESTATISTICS._serialized_end=3946 + _WRITEROUTPUT._serialized_start=3949 + _WRITEROUTPUT._serialized_end=4090 + _DETECTORMODULECONFIG._serialized_start=4093 + _DETECTORMODULECONFIG._serialized_end=4351 + _DETECTORCONFIG._serialized_start=4353 + _DETECTORCONFIG._serialized_end=4478 + _DETECTORINPUT._serialized_start=4481 + _DETECTORINPUT._serialized_end=4733 + _DETECTOROUTPUT._serialized_start=4735 + _DETECTOROUTPUT._serialized_end=4751 + _DETECTORSTATUS._serialized_start=4753 + _DETECTORSTATUS._serialized_end=4851 + _FPGAFIFOSTATUS._serialized_start=4853 + _FPGAFIFOSTATUS._serialized_end=4934 + _DATAPROCESSINGSETTINGS._serialized_start=4937 + _DATAPROCESSINGSETTINGS._serialized_end=5252 + _MODULESTATISTICS._serialized_start=5255 + _MODULESTATISTICS._serialized_end=5492 + _IMAGE._serialized_start=5494 + _IMAGE._serialized_end=5567 + _MASKTOLOAD._serialized_start=5569 + _MASKTOLOAD._serialized_end=5615 + _MEASUREMENTSTATISTICS._serialized_start=5618 + _MEASUREMENTSTATISTICS._serialized_end=6064 + _BROKERSTATUS._serialized_start=6067 + _BROKERSTATUS._serialized_end=6204 + _BROKERFULLSTATUS._serialized_start=6207 + _BROKERFULLSTATUS._serialized_end=6371 + _DETECTORLISTELEMENT._serialized_start=6373 + _DETECTORLISTELEMENT._serialized_end=6445 + _DETECTORLIST._serialized_start=6447 + _DETECTORLIST._serialized_end=6565 + _DETECTORSELECTION._serialized_start=6567 + _DETECTORSELECTION._serialized_end=6598 + _GRPC_JFJOCHRECEIVER._serialized_start=7131 + _GRPC_JFJOCHRECEIVER._serialized_end=7824 + _GRPC_JFJOCHWRITER._serialized_start=7827 + _GRPC_JFJOCHWRITER._serialized_end=8029 + _GRPC_JFJOCHDETECTOR._serialized_start=8032 + _GRPC_JFJOCHDETECTOR._serialized_end=8418 + _GRPC_JFJOCHBROKER._serialized_start=8421 + _GRPC_JFJOCHBROKER._serialized_end=10041 # @@protoc_insertion_point(module_scope) diff --git a/receiver/JFJochReceiverService.cpp b/receiver/JFJochReceiverService.cpp index 5d8e7642..0de1753b 100644 --- a/receiver/JFJochReceiverService.cpp +++ b/receiver/JFJochReceiverService.cpp @@ -153,6 +153,9 @@ grpc::Status JFJochReceiverService::GetStatus(grpc::ServerContext *context, cons // Need to hold mutex, as receiver might not exist here, if state is idle std::unique_lock ul(state_mutex); + response->set_progress(-1); + response->set_send_buffers_avail(-1); + response->set_indexing_rate(-1); if (state == ReceiverState::Running) { response->set_progress(receiver->GetProgress()); response->set_send_buffers_avail(receiver->GetAvailableSendBuffers()); diff --git a/tests/JFJochFullIntegrationTest.cpp b/tests/JFJochFullIntegrationTest.cpp index b4585773..683a1769 100644 --- a/tests/JFJochFullIntegrationTest.cpp +++ b/tests/JFJochFullIntegrationTest.cpp @@ -566,7 +566,6 @@ TEST_CASE("JFJochIntegrationTest_Cancel", "[JFJochReceiver]") { REQUIRE(statistics.collection_efficiency() == 0.5); REQUIRE(statistics.images_collected() == 5); - REQUIRE(statistics.has_images_written()); REQUIRE(statistics.images_written() == 5); REQUIRE(statistics.max_image_number_sent() == 4); REQUIRE(statistics.cancelled());