SKIPPED: psi/dornier2.c psi/ecbdriv.c psi/el734hp.c psi/libpsi.a psi/make_gen psi/makefile_linux psi/pimotor.c psi/pipiezo.c psi/sinqhttp.c psi/tcpdornier.c psi/velodornier.c
722 lines
16 KiB
C
722 lines
16 KiB
C
/**
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* This is a library of functions and data structures for performing
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* triple axis spectrometer angle calculations using the UB-matrix
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* formalism as described by Mark Lumsden, to appear in Acta Cryst.
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*
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* copyright: see file COPYRIGHT
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*
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* Mark Koennecke, April 2005
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*/
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#include <math.h>
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#include <stdlib.h>
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#include <assert.h>
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#include "trigd.h"
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#include "vector.h"
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#include "tasublib.h"
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#define ABS(x) (x < 0 ? -(x) : (x))
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#define PI 3.141592653589793
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#define ECONST 2.072
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#define DEGREE_RAD (PI/180.0) /* Radians per degree */
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#define VERT 0
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#define HOR 1
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#define INPLANEPREC 0.01
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/*============== monochromator/analyzer stuff =========================*/
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double energyToK(double energy){
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double K;
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K = sqrt(energy/ECONST);
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return K;
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}
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/*---------------------------------------------------------------------*/
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double KtoEnergy(double k){
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double energy;
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energy = ECONST*k*k;
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return energy;
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}
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/*-------------------------------------------------------------------*/
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static double calcCurvature(double B1, double B2, double theta,
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int ori){
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assert(ori == VERT || ori == HOR);
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if(ori == VERT){
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return B1 + B2/Sind(ABS(theta));
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} else {
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return B1 + B2*Sind(ABS(theta));
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}
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}
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/*--------------------------------------------------------------------*/
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int maCalcTwoTheta(maCrystal data, double k, double *two_theta){
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double fd, theta;
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/* fd = k/(2.*data.dd); */
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fd = PI/(data.dd*k);
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if(fd > 1.0) {
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return ENERGYTOBIG;
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}
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theta = Asind(fd)*data.ss;
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*two_theta = 2.*theta;
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return 1;
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}
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/*--------------------------------------------------------------------*/
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double maCalcVerticalCurvature(maCrystal data, double two_theta){
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return calcCurvature(data.VB1,data.VB2, two_theta/2.,VERT);
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}
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/*-------------------------------------------------------------------*/
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double maCalcHorizontalCurvature(maCrystal data, double two_theta){
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return calcCurvature(data.HB1,data.HB2, two_theta/2.,HOR);
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}
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/*--------------------------------------------------------------------*/
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double maCalcK(maCrystal data, double two_theta){
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double k;
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k = ABS(data.dd * Sind(two_theta/2));
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if(ABS(k) > .001){
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k = PI / k;
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} else {
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k = .0;
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}
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return k;
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}
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/*==================== reciprocal space ==============================*/
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static MATRIX tasReflectionToHC(tasQEPosition r, MATRIX B){
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MATRIX h = NULL, hc = NULL;
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h = makeVector();
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if(h == NULL){
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return NULL;
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}
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vectorSet(h,0,r.qh);
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vectorSet(h,1,r.qk);
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vectorSet(h,2,r.ql);
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hc = mat_mul(B,h);
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killVector(h);
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return hc;
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}
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/*------------------------------------------------------------------
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a quadrant dependent tangens
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------------------------------------------------------------------*/
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static double rtan(double y, double x){
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double val;
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if( (x == 0.) && (y == 0.) ) {
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return .0;
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}
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if( x == 0.) {
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if(y < 0.){
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return -PI/2.;
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} else {
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return PI/2.;
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}
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}
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if(ABS(y) < ABS(x)) {
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val = atan(ABS(y/x));
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if(x < 0.) {
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val = PI - val;
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}
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if(y < 0.){
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val = -val;
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}
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return val;
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} else {
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val = PI/2. - atan(ABS(x/y));
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if(x < 0.) {
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val = PI - val;
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}
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if( y < 0.) {
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val = - val;
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}
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}
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return val;
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}
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/*---------------------------------------------------------------*/
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static double calcTheta(double ki, double kf, double two_theta){
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/**
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* |ki| - |kf|cos(two_theta)
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* tan(theta) = --------------------------
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* |kf|sin(two_theta)
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*/
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return rtan(ABS(ki) - ABS(kf)*Cosd(two_theta),
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ABS(kf)*Sind(two_theta))/DEGREE_RAD;
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}
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/*--------------------------------------------------------------------*/
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static MATRIX uFromAngles(double om, double sgu, double sgl){
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MATRIX u;
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u = makeVector();
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if(u == NULL){
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return NULL;
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}
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vectorSet(u,0,-Cosd(sgl)*Cosd(om));
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vectorSet(u,1,Cosd(sgu)*Sind(om) - Sind(sgu)*Sind(sgl)*Cosd(om));
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vectorSet(u,2,-Sind(sgu)*Sind(om) - Cosd(sgu)*Sind(sgl)*Cosd(om));
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return u;
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}
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/*---------------------------------------------------------------*/
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static MATRIX calcTasUVectorFromAngles(tasReflection r){
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double theta, om;
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theta = calcTheta(r.qe.ki,r.qe.kf,r.angles.sample_two_theta);
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om = r.angles.a3 - theta;
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return uFromAngles(om,r.angles.sgu, r.angles.sgl);
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}
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/*-------------------------------------------------------------------*/
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MATRIX calcPlaneNormal(tasReflection r1, tasReflection r2){
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MATRIX u1 = NULL, u2 = NULL, planeNormal = NULL;
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int i;
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u1 = calcTasUVectorFromAngles(r1);
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u2 = calcTasUVectorFromAngles(r2);
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if(u1 != NULL && u2 != NULL){
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planeNormal = vectorCrossProduct(u1,u2);
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/*
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The plane normal has to point to the stars and not to the earth
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core in order for the algorithm to work.
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*/
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if(planeNormal[2][0] < .0){
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for(i = 0; i < 3; i++){
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planeNormal[i][0] = -1.*planeNormal[i][0];
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}
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}
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mat_free(u1);
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mat_free(u2);
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normalizeVector(planeNormal);
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return planeNormal;
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} else {
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return NULL;
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}
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}
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/*--------------------------------------------------------------------*/
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MATRIX calcTasUBFromTwoReflections(lattice cell, tasReflection r1,
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tasReflection r2, int *errorCode){
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MATRIX B, HT, UT, U, UB, HTT ;
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MATRIX u1, u2, h1, h2, planeNormal;
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double ud[3];
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int status;
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*errorCode = 1;
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/*
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calculate the B matrix and the HT matrix
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*/
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B = mat_creat(3,3,ZERO_MATRIX);
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status = calculateBMatrix(cell,B);
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if(status < 0){
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*errorCode = status;
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return NULL;
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}
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h1 = tasReflectionToHC(r1.qe,B);
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h2 = tasReflectionToHC(r2.qe,B);
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if(h1 == NULL || h2 == NULL){
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*errorCode = UBNOMEMORY;
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mat_free(B);
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return NULL;
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}
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HT = matFromTwoVectors(h1,h2);
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if(HT == NULL){
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*errorCode = UBNOMEMORY;
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mat_free(B);
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mat_free(h1);
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mat_free(h2);
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return NULL;
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}
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/*
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calculate U vectors and UT matrix
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*/
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u1 = calcTasUVectorFromAngles(r1);
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u2 = calcTasUVectorFromAngles(r2);
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if(u1 == NULL || u2 == NULL){
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*errorCode = UBNOMEMORY;
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mat_free(B);
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mat_free(h1);
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mat_free(h2);
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return NULL;
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}
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UT = matFromTwoVectors(u1,u2);
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if(UT == NULL){
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*errorCode = UBNOMEMORY;
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mat_free(B);
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mat_free(h1);
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mat_free(h2);
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mat_free(u1);
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mat_free(u2);
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mat_free(HT);
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return NULL;
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}
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/*
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UT = U * HT
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*/
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HTT = mat_tran(HT);
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if(HTT == NULL){
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*errorCode = UBNOMEMORY;
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mat_free(B);
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mat_free(h1);
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mat_free(h2);
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mat_free(u1);
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mat_free(u2);
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mat_free(HT);
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return NULL;
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}
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U = mat_mul(UT,HTT);
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if(U == NULL){
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*errorCode = UBNOMEMORY;
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mat_free(B);
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mat_free(h1);
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mat_free(h2);
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mat_free(u1);
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mat_free(u2);
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mat_free(HT);
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mat_free(HTT);
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return NULL;
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}
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UB = mat_mul(U,B);
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if(UB == NULL){
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mat_free(B);
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mat_free(h1);
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mat_free(h2);
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mat_free(u1);
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mat_free(u2);
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mat_free(HT);
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mat_free(HTT);
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mat_free(U);
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*errorCode = UBNOMEMORY;
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}
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/*
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clean up
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*/
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killVector(h1);
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killVector(h2);
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mat_free(HT);
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mat_free(HTT);
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killVector(u1);
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killVector(u2);
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mat_free(UT);
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mat_free(U);
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mat_free(B);
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return UB;
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}
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/*-----------------------------------------------------------------------------*/
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static MATRIX buildTVMatrix(MATRIX U1V, MATRIX U2V){
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MATRIX T, T3V;
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int i;
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normalizeVector(U2V);
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T3V = vectorCrossProduct(U1V,U2V);
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normalizeVector(T3V);
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if(T3V == NULL){
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return NULL;
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}
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T = mat_creat(3,3,ZERO_MATRIX);
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if(T == NULL){
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killVector(T3V);
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return NULL;
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}
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for(i = 0; i < 3; i++){
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T[i][0] = U1V[i][0];
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T[i][1] = U2V[i][0];
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T[i][2] = T3V[i][0];
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}
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killVector(T3V);
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return T;
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}
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/*-----------------------------------------------------------------------------*/
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static MATRIX tasReflectionToQC(tasQEPosition r, MATRIX UB){
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MATRIX Q, QC;
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Q = makeVector();
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if(Q == NULL){
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return NULL;
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}
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vectorSet(Q,0,r.qh);
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vectorSet(Q,1,r.qk);
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vectorSet(Q,2,r.ql);
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QC = mat_mul(UB,Q);
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killVector(Q);
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return QC;
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}
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/*----------------------------------------------------------------------------*/
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static MATRIX buildRMatrix(MATRIX UB, MATRIX planeNormal,
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tasQEPosition qe, int *errorCode){
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MATRIX U1V, U2V, TV, TVINV, M;
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*errorCode = 1;
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U1V = tasReflectionToQC(qe,UB);
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if(U1V == NULL){
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*errorCode = UBNOMEMORY;
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return NULL;
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}
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normalizeVector(U1V);
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U2V = vectorCrossProduct(planeNormal,U1V);
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if(U2V == NULL){
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killVector(U1V);
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*errorCode = UBNOMEMORY;
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return NULL;
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}
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if(vectorLength(U2V) < .0001){
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*errorCode = BADUBORQ;
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killVector(U1V);
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killVector(U2V);
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return NULL;
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}
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TV = buildTVMatrix(U1V,U2V);
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if(TV == NULL){
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killVector(U1V);
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killVector(U2V);
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*errorCode = UBNOMEMORY;
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return NULL;
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}
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TVINV = mat_inv(TV);
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if(TVINV == NULL){
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*errorCode = BADUBORQ;
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}
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killVector(U1V);
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killVector(U2V);
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mat_free(TV);
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return TVINV;
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}
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/*-------------------------------------------------------------------------------*/
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int calcTasQAngles(MATRIX UB, MATRIX planeNormal, int ss, tasQEPosition qe,
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ptasAngles angles){
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MATRIX R, QC;
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double om, q, theta, cos2t;
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int errorCode = 1;
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R = buildRMatrix(UB, planeNormal, qe, &errorCode);
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if(R == NULL){
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return errorCode;
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}
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angles->sgl = Asind(-R[2][0]);
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if(ABS(angles->sgl -90.) < .5){
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mat_free(R);
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return BADUBORQ;
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}
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/*
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Now, this is slightly different then in the publication by M. Lumsden.
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The reason is that the atan2 helps to determine the sign of om
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whereas the sin, cos formula given by M. Lumsden yield ambiguous signs
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especially for om.
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sgu = atan(R[2][1],R[2][2]) where:
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R[2][1] = cos(sgl)sin(sgu)
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R[2][2] = cos(sgu)cos(sgl)
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om = atan(R[1][0],R[0][0]) where:
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R[1][0] = sin(om)cos(sgl)
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R[0][0] = cos(om)cos(sgl)
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The definitions of th R components are taken from M. Lumsden
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R-matrix definition.
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*/
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om = Atan2d(R[1][0],R[0][0]);
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angles->sgu = Atan2d(R[2][1],R[2][2]);
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QC = tasReflectionToQC(qe,UB);
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if(QC == NULL){
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mat_free(R);
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return UBNOMEMORY;
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}
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q = vectorLength(QC);
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q = 2.*PI*vectorLength(QC);
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cos2t = (qe.ki*qe.ki + qe.kf*qe.kf - q*q)/(2. * ABS(qe.ki) * ABS(qe.kf));
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if(ABS(cos2t) > 1.){
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mat_free(R);
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killVector(QC);
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return TRIANGLENOTCLOSED;
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}
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angles->sample_two_theta = ss*Acosd(cos2t);
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theta = calcTheta(qe.ki, qe.kf,angles->sample_two_theta);
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angles->a3 = om + theta;
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/*
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put a3 into -180, 180 properly. We can always turn by 180 because the
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scattering geometry is symmetric in this respect. It is like looking at
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the scattering plane from the other side
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*/
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angles->a3 -= 180.;
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if(angles->a3 < -180.){
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angles->a3 += 360.;
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}
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killVector(QC);
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mat_free(R);
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return 1;
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}
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/*------------------------------------------------------------------------*/
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int calcTasQH(MATRIX UB, tasAngles angles, ptasQEPosition qe){
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MATRIX UBINV = NULL, QV = NULL, Q = NULL;
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double q;
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tasReflection r;
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int i;
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UBINV = mat_inv(UB);
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r.angles = angles;
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r.qe = *qe;
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QV = calcTasUVectorFromAngles(r);
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if(UBINV == NULL || QV == NULL){
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return UBNOMEMORY;
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}
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/*
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normalize the QV vector to be the length of the Q vector
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Thereby take into account the physicists magic fudge
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2PI factor
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*/
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q = sqrt(qe->ki*qe->ki + qe->kf*qe->kf -
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2.*qe->ki*qe->kf*Cosd(angles.sample_two_theta));
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qe->qm = q;
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q /= 2. * PI;
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for(i = 0; i < 3; i++){
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QV[i][0] *= q;
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}
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Q = mat_mul(UBINV,QV);
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if(Q == NULL){
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mat_free(UBINV);
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killVector(QV);
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return UBNOMEMORY;
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}
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qe->qh = Q[0][0];
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qe->qk = Q[1][0];
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qe->ql = Q[2][0];
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killVector(QV);
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killVector(Q);
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mat_free(UBINV);
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return 1;
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}
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/*---------------------------------------------------------------------*/
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int calcAllTasAngles(ptasMachine machine, tasQEPosition qe,
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ptasAngles angles){
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int status;
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tasReflection r;
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status = maCalcTwoTheta(machine->monochromator,qe.ki,
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&angles->monochromator_two_theta);
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if(status != 1){
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return status;
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}
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status = maCalcTwoTheta(machine->analyzer,qe.kf,&
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angles->analyzer_two_theta);
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if(status != 1){
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return status;
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}
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status = calcTasQAngles(machine->UB, machine->planeNormal,
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machine->ss_sample, qe,angles);
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if(status != 1){
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return status;
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}
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return 1;
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}
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/*----------------------------------------------------------------------*/
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int calcTasQEPosition(ptasMachine machine, tasAngles angles,
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ptasQEPosition qe){
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int status;
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qe->ki = maCalcK(machine->monochromator,angles.monochromator_two_theta);
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qe->kf = maCalcK(machine->analyzer,angles.analyzer_two_theta);
|
|
|
|
status = calcTasQH(machine->UB,angles,qe);
|
|
if(status != 1){
|
|
return status;
|
|
}
|
|
return 1;
|
|
}
|
|
/*================== POWDER Implementation ===========================*/
|
|
int calcTasPowderAngles(ptasMachine machine, tasQEPosition qe,
|
|
ptasAngles angles){
|
|
double cos2t;
|
|
int status;
|
|
tasReflection r;
|
|
|
|
status = maCalcTwoTheta(machine->monochromator,qe.ki,
|
|
&angles->monochromator_two_theta);
|
|
if(status != 1){
|
|
return status;
|
|
}
|
|
|
|
cos2t = (qe.ki*qe.ki + qe.kf*qe.kf - qe.qm*qe.qm)/(2. * ABS(qe.ki) * ABS(qe.kf));
|
|
if(cos2t > 1.){
|
|
return TRIANGLENOTCLOSED;
|
|
}
|
|
angles->sample_two_theta = machine->ss_sample*Acosd(cos2t);
|
|
|
|
|
|
status = maCalcTwoTheta(machine->analyzer,qe.kf,&
|
|
angles->analyzer_two_theta);
|
|
if(status != 1){
|
|
return status;
|
|
}
|
|
|
|
return 1;
|
|
}
|
|
/*---------------------------------------------------------------------*/
|
|
int calcTasPowderPosition(ptasMachine machine, tasAngles angles,
|
|
ptasQEPosition qe){
|
|
|
|
int status;
|
|
|
|
qe->ki = maCalcK(machine->monochromator,angles.monochromator_two_theta);
|
|
qe->kf = maCalcK(machine->analyzer,angles.analyzer_two_theta);
|
|
|
|
qe->qm = sqrt(qe->ki*qe->ki + qe->kf*qe->kf -
|
|
2.*qe->ki*qe->kf*Cosd(angles.sample_two_theta));
|
|
return 1;
|
|
}
|
|
/*====================== Logic implementation =========================*/
|
|
void setTasPar(ptasQEPosition qe, int tasMode, int tasVar, double value){
|
|
double et;
|
|
|
|
assert(tasMode == KICONST || tasMode == KFCONST || tasMode == ELASTIC);
|
|
|
|
switch(tasVar){
|
|
case KF:
|
|
if(tasMode == ELASTIC){
|
|
qe->kf = qe->ki;
|
|
} else {
|
|
qe->kf = value;
|
|
}
|
|
break;
|
|
case EF:
|
|
if(tasMode == ELASTIC){
|
|
qe->kf = qe->ki;
|
|
}else {
|
|
qe->kf = energyToK(value);
|
|
}
|
|
break;
|
|
case KI:
|
|
qe->ki = value;
|
|
if(tasMode == ELASTIC){
|
|
qe->kf = value;
|
|
}
|
|
break;
|
|
case EI:
|
|
qe->ki = energyToK(value);
|
|
if(tasMode == ELASTIC){
|
|
qe->kf = qe->ki;
|
|
}
|
|
break;
|
|
case QH:
|
|
qe->qh = value;
|
|
break;
|
|
case QK:
|
|
qe->qk = value;
|
|
break;
|
|
case QL:
|
|
qe->ql = value;
|
|
break;
|
|
case EN:
|
|
if(tasMode == KICONST){
|
|
et = KtoEnergy(qe->ki) - value;
|
|
qe->kf = energyToK(et);
|
|
} else if(tasMode == KFCONST){
|
|
et = KtoEnergy(qe->kf) + value;
|
|
qe->ki = energyToK(et);
|
|
}else if(tasMode == ELASTIC){
|
|
qe->kf = qe->ki;
|
|
} else {
|
|
assert(0);
|
|
}
|
|
break;
|
|
case QM:
|
|
qe->qm = value;
|
|
break;
|
|
default:
|
|
assert(0);
|
|
break;
|
|
}
|
|
}
|
|
/*-------------------------------------------------------------------------*/
|
|
double getTasPar(tasQEPosition qe, int tasVar){
|
|
switch(tasVar){
|
|
case EI:
|
|
return KtoEnergy(qe.ki);
|
|
break;
|
|
case KI:
|
|
return qe.ki;
|
|
break;
|
|
case EF:
|
|
return KtoEnergy(qe.kf);
|
|
break;
|
|
case KF:
|
|
return qe.kf;
|
|
break;
|
|
case QH:
|
|
return qe.qh;
|
|
break;
|
|
case QK:
|
|
return qe.qk;
|
|
break;
|
|
case QL:
|
|
return qe.ql;
|
|
break;
|
|
case EN:
|
|
return KtoEnergy(qe.ki) - KtoEnergy(qe.kf);
|
|
break;
|
|
case QM:
|
|
return qe.qm;
|
|
break;
|
|
default:
|
|
assert(0);
|
|
}
|
|
}
|
|
/*-------------------------------------------------------------------------*/
|
|
int isInPlane(MATRIX planeNormal, tasQEPosition qe){
|
|
MATRIX v = NULL;
|
|
double val;
|
|
|
|
v = makeVector();
|
|
v[0][0] = qe.qh;
|
|
v[1][0] = qe.qk;
|
|
v[2][0] = qe.ql;
|
|
val = vectorDotProduct(planeNormal,v);
|
|
mat_free(v);
|
|
if(ABS(val) > INPLANEPREC){
|
|
return 0;
|
|
} else {
|
|
return 1;
|
|
}
|
|
}
|
|
/*--------------------------------------------------------------------*/
|
|
MATRIX calcScatteringPlaneNormal(tasQEPosition qe1, tasQEPosition qe2){
|
|
MATRIX v1 = NULL, v2 = NULL, planeNormal;
|
|
|
|
v1 = makeVector();
|
|
v2 = makeVector();
|
|
if(v1 != NULL && v2 != NULL){
|
|
v1[0][0] = qe1.qh;
|
|
v1[1][0] = qe1.qk;
|
|
v1[2][0] = qe1.ql;
|
|
|
|
v2[0][0] = qe2.qh;
|
|
v2[1][0] = qe2.qk;
|
|
v2[2][0] = qe2.ql;
|
|
|
|
planeNormal = vectorCrossProduct(v1,v2);
|
|
normalizeVector(planeNormal);
|
|
mat_free(v1);
|
|
mat_free(v2);
|
|
return planeNormal;
|
|
} else {
|
|
return NULL;
|
|
}
|
|
}
|