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3cb901b43794d697485a289f935eb2d0be461af2
sics/napi.c
koennecke 1f862889ce - Port to SL-5 
SKIPPED:
	psi/tecs/make_crv
2008-01-03 09:56:55 +00:00

1521 lines
40 KiB
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/*---------------------------------------------------------------------------
NeXus - Neutron & X-ray Common Data Format
Application Program Interface Routines
Copyright (C) 1997-2006 Mark Koennecke, Przemek Klosowski
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
For further information, see <http://www.neutron.anl.gov/NeXus/>
----------------------------------------------------------------------------*/
static const char* rscid = "$Id: napi.c,v 1.14 2008/01/03 09:56:56 koennecke Exp $"; /* Revision inserted by CVS */
#include <stdio.h>
#include <stdlib.h>
#include <assert.h>
#include <string.h>
#include <ctype.h>
#include <time.h>
#include <stdarg.h>
#include "napi.h"
#include "nxstack.h"
/*---------------------------------------------------------------------
Recognized and handled napimount URLS
-----------------------------------------------------------------------*/
#define NXBADURL 0
#define NXFILE 1
/*--------------------------------------------------------------------*/
static int iFortifyScope;
/*----------------------------------------------------------------------
This is a section with code for searching the NX_LOAD_PATH
-----------------------------------------------------------------------*/
#ifdef _WIN32
#define LIBSEP ";"
#define PATHSEP "\\"
#else
#define LIBSEP ":"
#define PATHSEP "/"
#endif
extern char *stptok(char *s, char *tok, size_t toklen, char *brk);
/*---------------------------------------------------------------------
wrapper for getenv. This is a future proofing thing for porting to OS
which have different ways of accessing environment variables
--------------------------------------------------------------------*/
static char *nxgetenv(const char *name){
return getenv(name);
}
/*----------------------------------------------------------------------*/
static int canOpen(char *filename){
FILE *fd = NULL;
fd = fopen(filename,"r");
if(fd != NULL){
fclose(fd);
return 1;
} else {
return 0;
}
}
/*--------------------------------------------------------------------*/
static char *locateNexusFileInPath(char *startName){
char *loadPath = NULL, *testPath = NULL, *pPtr = NULL;
char pathPrefix[256];
int length;
if(canOpen(startName)){
return strdup(startName);
}
loadPath = nxgetenv("NX_LOAD_PATH");
if(loadPath == NULL){
/* file not found will be issued by upper level code */
return strdup(startName);
}
pPtr = stptok(loadPath,pathPrefix,255,LIBSEP);
while(pPtr != NULL){
length = strlen(pathPrefix) + strlen(startName) + strlen(PATHSEP) + 2;
testPath = malloc(length*sizeof(char));
if(testPath == NULL){
return strdup(startName);
}
memset(testPath,0,length*sizeof(char));
strcpy(testPath, pathPrefix);
strcat(testPath,PATHSEP);
strcat(testPath,startName);
if(canOpen(testPath)){
return(testPath);
}
free(testPath);
pPtr = stptok(pPtr,pathPrefix,255,LIBSEP);
}
return strdup(startName);
}
/*------------------------------------------------------------------------
HDF-5 cache size special stuff
-------------------------------------------------------------------------*/
long nx_cacheSize = 1024000; /* 1MB, HDF-5 default */
NXstatus NXsetcache(long newVal)
{
if(newVal > 0)
{
nx_cacheSize = newVal;
return NX_OK;
}
return NX_ERROR;
}
/*-----------------------------------------------------------------------*/
static NXstatus NXisXML(CONSTCHAR *filename)
{
FILE *fd = NULL;
char line[132];
fd = fopen(filename,"r");
if(fd) {
fgets(line,131,fd);
fclose(fd);
if(strstr(line,"?xml") != NULL){
return NX_OK;
}
}
return NX_ERROR;
}
/*-------------------------------------------------------------------------*/
static void NXNXNXReportError(void *pData, char *string)
{
printf("%s \n",string);
}
/*---------------------------------------------------------------------*/
void *NXpData = NULL;
void (*NXIReportError)(void *pData, char *string) = NXNXNXReportError;
/*---------------------------------------------------------------------*/
extern void NXMSetError(void *pData,
void (*NewError)(void *pD, char *text))
{
NXpData = pData;
NXIReportError = NewError;
}
/*----------------------------------------------------------------------*/
extern ErrFunc NXMGetError(){
return NXIReportError;
}
/*----------------------------------------------------------------------*/
void NXNXNoReport(void *pData, char *string){
/* do nothing */
}
/*----------------------------------------------------------------------*/
static ErrFunc last_errfunc = NXNXNXReportError;
extern void NXMDisableErrorReporting()
{
last_errfunc = NXMGetError();
NXMSetError(NXpData, NXNXNoReport);
}
extern void NXMEnableErrorReporting()
{
NXMSetError(NXpData, last_errfunc);
}
/*----------------------------------------------------------------------*/
#ifdef HDF5
#include "napi5.h"
#endif
#ifdef HDF4
#include "napi4.h"
#endif
#ifdef NXXML
#include "nxxml.h"
#endif
/* ----------------------------------------------------------------------
Definition of NeXus API
---------------------------------------------------------------------*/
static int determineFileType(CONSTCHAR *filename)
{
FILE *fd = NULL;
int iRet, fapl;
NXhandle handle;
/*
this is for reading, check for existence first
*/
fd = fopen(filename,"r");
if(fd == NULL){
return -1;
}
fclose(fd);
#ifdef HDF5
iRet=H5Fis_hdf5((const char*)filename);
if( iRet > 0){
return 2;
}
#endif
#ifdef HDF4
iRet=Hishdf((const char*)filename);
if( iRet > 0){
return 1;
}
#endif
#ifdef NXXML
iRet = NXisXML(filename);
if(iRet == NX_OK){
return 3;
}
#endif
/*
file type not recognized
*/
return 0;
}
/*---------------------------------------------------------------------*/
static pNexusFunction handleToNexusFunc(NXhandle fid){
pFileStack fileStack = NULL;
fileStack = (pFileStack)fid;
if(fileStack != NULL){
return peekFileOnStack(fileStack);
} else {
return NULL;
}
}
/*--------------------------------------------------------------------*/
static NXstatus NXinternalopen(CONSTCHAR *userfilename, NXaccess am,
pFileStack fileStack);
/*----------------------------------------------------------------------*/
NXstatus NXopen(CONSTCHAR *userfilename, NXaccess am, NXhandle *gHandle){
int status;
pFileStack fileStack = NULL;
NXhandle hfile;
fileStack = makeFileStack();
if(fileStack == NULL){
NXIReportError (NXpData,"ERROR: no memory to create filestack");
return NX_ERROR;
}
status = NXinternalopen(userfilename,am,fileStack);
if(status == NX_OK){
*gHandle = fileStack;
}
return status;
}
/*-----------------------------------------------------------------------*/
static NXstatus NXinternalopen(CONSTCHAR *userfilename, NXaccess am, pFileStack fileStack)
{
int hdf_type=0;
int iRet=0;
NXhandle hdf5_handle = NULL;
NXhandle hdf4_handle = NULL;
NXhandle xmlHandle = NULL;
pNexusFunction fHandle = NULL;
NXstatus retstat = NX_ERROR;
char error[1024];
char *filename = NULL;
/* configure fortify
iFortifyScope = Fortify_EnterScope();
Fortify_CheckAllMemory();
*/
/*
allocate data
*/
fHandle = (pNexusFunction)malloc(sizeof(NexusFunction));
if (fHandle == NULL) {
NXIReportError (NXpData,"ERROR: no memory to create Function structure");
return NX_ERROR;
}
memset(fHandle, 0, sizeof(NexusFunction)); /* so any functions we miss are NULL */
/*
test the strip flag. Elimnate it for the rest of the tests to work
*/
fHandle->stripFlag = 1;
if(am & NXACC_NOSTRIP){
fHandle->stripFlag = 0;
am -= NXACC_NOSTRIP;
}
if (am==NXACC_CREATE) {
/* HDF4 will be used ! */
hdf_type=1;
filename = strdup(userfilename);
} else if (am==NXACC_CREATE4) {
/* HDF4 will be used ! */
hdf_type=1;
filename = strdup(userfilename);
} else if (am==NXACC_CREATE5) {
/* HDF5 will be used ! */
hdf_type=2;
filename = strdup(userfilename);
} else if (am==NXACC_CREATEXML) {
/* XML will be used ! */
hdf_type=3;
filename = strdup(userfilename);
} else {
filename = locateNexusFileInPath((char *)userfilename);
if(filename == NULL){
NXIReportError(NXpData,"Out of memory in NeXus-API");
free(fHandle);
return NX_ERROR;
}
/* check file type hdf4/hdf5/XML for reading */
iRet = determineFileType(filename);
if(iRet < 0) {
snprintf(error,1023,"failed to open %s for reading",
filename);
NXIReportError(NXpData,error);
free(filename);
return NX_ERROR;
}
if(iRet == 0){
snprintf(error,1023,"failed to determine filetype for %s ",
filename);
NXIReportError(NXpData,error);
free(filename);
free(fHandle);
return NX_ERROR;
}
hdf_type = iRet;
}
if(filename == NULL){
NXIReportError(NXpData,"Out of memory in NeXus-API");
return NX_ERROR;
}
if (hdf_type==1) {
/* HDF4 type */
#ifdef HDF4
retstat = NX4open((const char *)filename,am,&hdf4_handle);
if(retstat != NX_OK){
free(fHandle);
free(filename);
return retstat;
}
fHandle->pNexusData=hdf4_handle;
NX4assignFunctions(fHandle);
pushFileStack(fileStack,fHandle,filename);
#else
NXIReportError (NXpData,
"ERROR: Attempt to create HDF4 file when not linked with HDF4");
retstat = NX_ERROR;
#endif /* HDF4 */
free(filename);
return retstat;
} else if (hdf_type==2) {
/* HDF5 type */
#ifdef HDF5
retstat = NX5open(filename,am,&hdf5_handle);
if(retstat != NX_OK){
free(fHandle);
free(filename);
return retstat;
}
fHandle->pNexusData=hdf5_handle;
NX5assignFunctions(fHandle);
pushFileStack(fileStack,fHandle, filename);
#else
NXIReportError (NXpData,
"ERROR: Attempt to create HDF5 file when not linked with HDF5");
retstat = NX_ERROR;
#endif /* HDF5 */
free(filename);
return retstat;
} else if(hdf_type == 3){
/*
XML type
*/
#ifdef NXXML
retstat = NXXopen(filename,am,&xmlHandle);
if(retstat != NX_OK){
free(fHandle);
free(filename);
return retstat;
}
fHandle->pNexusData=xmlHandle;
NXXassignFunctions(fHandle);
pushFileStack(fileStack,fHandle, filename);
#else
NXIReportError (NXpData,
"ERROR: Attempt to create XML file when not linked with XML");
retstat = NX_ERROR;
#endif
} else {
NXIReportError (NXpData,
"ERROR: Format not readable by this NeXus library");
retstat = NX_ERROR;
}
if (filename != NULL) {
free(filename);
}
return retstat;
}
/* ------------------------------------------------------------------------- */
NXstatus NXclose (NXhandle *fid)
{
NXhandle hfil;
int status;
pFileStack fileStack = NULL;
pNexusFunction pFunc=NULL;
fileStack = (pFileStack)*fid;
pFunc = peekFileOnStack(fileStack);
hfil = pFunc->pNexusData;
status = pFunc->nxclose(&hfil);
pFunc->pNexusData = hfil;
free(pFunc);
popFileStack(fileStack);
if(fileStackDepth(fileStack) < 0){
killFileStack(fileStack);
}
/*
Fortify_CheckAllMemory();
*/
return status;
}
/*-----------------------------------------------------------------------*/
NXstatus NXmakegroup (NXhandle fid, CONSTCHAR *name, CONSTCHAR *nxclass)
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxmakegroup(pFunc->pNexusData, name, nxclass);
}
/*------------------------------------------------------------------------*/
static int analyzeNapimount(char *napiMount, char *extFile, int extFileLen,
char *extPath, int extPathLen){
char *pPtr = NULL, *path = NULL;
int length;
memset(extFile,0,extFileLen);
memset(extPath,0,extPathLen);
pPtr = strstr(napiMount,"nxfile://");
if(pPtr == NULL){
return NXBADURL;
}
path = strrchr(napiMount,'#');
if(path == NULL){
length = strlen(napiMount) - 9;
if(length > extFileLen){
NXIReportError(NXpData,"ERROR: internal errro with external linking");
return NXBADURL;
}
memcpy(extFile,pPtr+9,length);
strcpy(extPath,"/");
return NXFILE;
} else {
pPtr += 9;
length = path - pPtr;
if(length > extFileLen){
NXIReportError(NXpData,"ERROR: internal errro with external linking");
return NXBADURL;
}
memcpy(extFile,pPtr,length);
length = strlen(path-1);
if(length > extPathLen){
NXIReportError(NXpData,"ERROR: internal error with external linking");
return NXBADURL;
}
strcpy(extPath,path+1);
return NXFILE;
}
return NXBADURL;
}
/*------------------------------------------------------------------------*/
NXstatus NXopengroup (NXhandle fid, CONSTCHAR *name, CONSTCHAR *nxclass)
{
int status, attStatus, type = NX_CHAR, length = 1023;
NXaccess access = NXACC_RDWR;
NXlink breakID;
pFileStack fileStack;
char nxurl[1024], exfile[512], expath[512];
ErrFunc oldError;
pNexusFunction pFunc = NULL;
fileStack = (pFileStack)fid;
pFunc = handleToNexusFunc(fid);
status = pFunc->nxopengroup(pFunc->pNexusData, name, nxclass);
oldError = NXMGetError();
NXIReportError = NXNXNoReport;
attStatus = NXgetattr(fid,"napimount",nxurl,&length, &type);
NXIReportError = oldError;
if(attStatus == NX_OK){
/*
this is an external linking group
*/
status = analyzeNapimount(nxurl,exfile,511,expath,511);
if(status == NXBADURL){
return NX_ERROR;
}
status = NXinternalopen(exfile,access, fileStack);
if(status == NX_ERROR){
return status;
}
status = NXopenpath(fid,expath);
NXgetgroupID(fid,&breakID);
setCloseID(fileStack,breakID);
}
return status;
}
/* ------------------------------------------------------------------- */
NXstatus NXclosegroup (NXhandle fid)
{
int status;
pFileStack fileStack = NULL;
NXlink closeID, currentID;
pNexusFunction pFunc = handleToNexusFunc(fid);
fileStack = (pFileStack)fid;
if(fileStackDepth(fileStack) == 0){
return pFunc->nxclosegroup(pFunc->pNexusData);
} else {
/* we have to check for leaving an external file */
NXgetgroupID(fid,&currentID);
peekIDOnStack(fileStack,&closeID);
if(NXsameID(fid,&closeID,&currentID) == NX_OK){
NXclose(&fid);
status = NXclosegroup(fid);
} else {
status = pFunc->nxclosegroup(pFunc->pNexusData);
}
return status;
}
}
/* --------------------------------------------------------------------- */
NXstatus NXmakedata (NXhandle fid, CONSTCHAR *name, int datatype,
int rank, int dimensions[])
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxmakedata(pFunc->pNexusData, name, datatype, rank, dimensions);
}
/* --------------------------------------------------------------------- */
NXstatus NXcompmakedata (NXhandle fid, CONSTCHAR *name, int datatype,
int rank, int dimensions[],int compress_type, int chunk_size[])
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxcompmakedata (pFunc->pNexusData, name, datatype, rank, dimensions, compress_type, chunk_size);
}
/* --------------------------------------------------------------------- */
NXstatus NXcompress (NXhandle fid, int compress_type)
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxcompress (pFunc->pNexusData, compress_type);
}
/* --------------------------------------------------------------------- */
NXstatus NXopendata (NXhandle fid, CONSTCHAR *name)
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxopendata(pFunc->pNexusData, name);
}
/* ----------------------------------------------------------------- */
NXstatus NXclosedata (NXhandle fid)
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxclosedata(pFunc->pNexusData);
}
/* ------------------------------------------------------------------- */
NXstatus NXputdata (NXhandle fid, void *data)
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxputdata(pFunc->pNexusData, data);
}
/* ------------------------------------------------------------------- */
NXstatus NXputattr (NXhandle fid, CONSTCHAR *name, void *data,
int datalen, int iType)
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxputattr(pFunc->pNexusData, name, data, datalen, iType);
}
/* ------------------------------------------------------------------- */
NXstatus NXputslab (NXhandle fid, void *data, int iStart[], int iSize[])
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxputslab(pFunc->pNexusData, data, iStart, iSize);
}
/* ------------------------------------------------------------------- */
NXstatus NXgetdataID (NXhandle fid, NXlink* sRes)
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxgetdataID(pFunc->pNexusData, sRes);
}
/* ------------------------------------------------------------------- */
NXstatus NXmakelink (NXhandle fid, NXlink* sLink)
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxmakelink(pFunc->pNexusData, sLink);
}
/* ------------------------------------------------------------------- */
NXstatus NXmakenamedlink (NXhandle fid, CONSTCHAR *newname, NXlink* sLink)
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxmakenamedlink(pFunc->pNexusData, newname, sLink);
}
/* --------------------------------------------------------------------*/
NXstatus NXopensourcegroup(NXhandle fid)
{
char target_path[512];
int status, type = NX_CHAR, length = 511;
status = NXgetattr(fid,"target",target_path,&length,&type);
if(status != NX_OK)
{
NXIReportError(NXpData,"ERROR: item not linked");
return NX_ERROR;
}
return NXopengrouppath(fid,target_path);
}
/*----------------------------------------------------------------------*/
NXstatus NXflush(NXhandle *pHandle)
{
NXhandle hfil;
pFileStack fileStack = NULL;
int status;
pNexusFunction pFunc=NULL;
fileStack = (pFileStack)*pHandle;
pFunc = peekFileOnStack(fileStack);
hfil = pFunc->pNexusData;
status = pFunc->nxflush(&hfil);
pFunc->pNexusData = hfil;
return status;
}
/*-------------------------------------------------------------------------*/
NXstatus NXmalloc (void** data, int rank,
int dimensions[], int datatype)
{
int i;
size_t size = 1;
*data = NULL;
for(i=0; i<rank; i++)
size *= dimensions[i];
if ((datatype == NX_CHAR) || (datatype == NX_INT8)
|| (datatype == NX_UINT8)) {
/* allow for terminating \0 */
size += 2;
}
else if ((datatype == NX_INT16) || (datatype == NX_UINT16)) {
size *= 2;
}
else if ((datatype == NX_INT32) || (datatype == NX_UINT32)
|| (datatype == NX_FLOAT32)) {
size *= 4;
}
else if ((datatype == NX_INT64) || (datatype == NX_UINT64)){
size *= 8;
}
else if (datatype == NX_FLOAT64) {
size *= 8;
}
else {
NXIReportError (NXpData,
"ERROR: NXmalloc - unknown data type in array");
return NX_ERROR;
}
*data = (void*)malloc(size);
memset(*data,0,size);
return NX_OK;
}
/*-------------------------------------------------------------------------*/
NXstatus NXfree (void** data)
{
if (data == NULL) {
NXIReportError (NXpData, "ERROR: passing NULL to NXfree");
return NX_ERROR;
}
if (*data == NULL) {
NXIReportError (NXpData,"ERROR: passing already freed pointer to NXfree");
return NX_ERROR;
}
free(*data);
*data = NULL;
return NX_OK;
}
/* --------------------------------------------------------------------- */
NXstatus NXgetnextentry (NXhandle fid, NXname name, NXname nxclass, int *datatype)
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxgetnextentry(pFunc->pNexusData, name, nxclass, datatype);
}
/*----------------------------------------------------------------------*/
/*
** TRIM.C - Remove leading, trailing, & excess embedded spaces
**
** public domain by Bob Stout
*/
#define NUL '\0'
char *nxitrim(char *str)
{
char *ibuf = str, *obuf = str;
int i = 0, cnt = 0;
/*
** Trap NULL
*/
if (str)
{
/*
** Remove leading spaces (from RMLEAD.C)
*/
for (ibuf = str; *ibuf && isspace(*ibuf); ++ibuf)
;
str = ibuf;
/*
** Remove trailing spaces (from RMTRAIL.C)
*/
i = strlen(str);
while (--i >= 0)
{
if (!isspace(str[i]))
break;
}
str[++i] = NUL;
}
return str;
}
/*-------------------------------------------------------------------------*/
NXstatus NXgetdata (NXhandle fid, void *data)
{
int status, type, rank, iDim[NX_MAXRANK];
char *pPtr, *pPtr2;
pNexusFunction pFunc = handleToNexusFunc(fid);
status = pFunc->nxgetinfo(pFunc->pNexusData, &rank, iDim, &type); /* unstripped size if string */
/* only strip one dimensional strings */
if ( (type == NX_CHAR) && (pFunc->stripFlag == 1) && (rank == 1) )
{
pPtr = (char*)malloc(iDim[0]+5);
memset(pPtr, 0, iDim[0]+5);
status = pFunc->nxgetdata(pFunc->pNexusData, pPtr);
pPtr2 = nxitrim(pPtr);
strncpy((char*)data, pPtr2, strlen(pPtr2)); /* not NULL terminated by default */
free(pPtr);
}
else
{
status = pFunc->nxgetdata(pFunc->pNexusData, data);
}
return status;
}
/*-------------------------------------------------------------------------*/
NXstatus NXgetinfo (NXhandle fid, int *rank,
int dimension[], int *iType)
{
int status;
char *pPtr = NULL;
pNexusFunction pFunc = handleToNexusFunc(fid);
status = pFunc->nxgetinfo(pFunc->pNexusData, rank, dimension, iType);
/*
the length of a string may be trimmed....
*/
/* only strip one dimensional strings */
if((*iType == NX_CHAR) && (pFunc->stripFlag == 1) && (*rank == 1)){
pPtr = (char *)malloc((dimension[0]+1)*sizeof(char));
if(pPtr != NULL){
memset(pPtr,0,(dimension[0]+1)*sizeof(char));
pFunc->nxgetdata(pFunc->pNexusData, pPtr);
dimension[0] = strlen(nxitrim(pPtr));
free(pPtr);
}
}
return status;
}
/*-------------------------------------------------------------------------*/
NXstatus NXgetslab (NXhandle fid, void *data,
int iStart[], int iSize[])
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxgetslab(pFunc->pNexusData, data, iStart, iSize);
}
/*-------------------------------------------------------------------------*/
NXstatus NXgetnextattr (NXhandle fileid, NXname pName,
int *iLength, int *iType)
{
pNexusFunction pFunc = handleToNexusFunc(fileid);
return pFunc->nxgetnextattr(pFunc->pNexusData, pName, iLength, iType);
}
/*-------------------------------------------------------------------------*/
NXstatus NXgetattr (NXhandle fid, char *name, void *data, int* datalen, int* iType)
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxgetattr(pFunc->pNexusData, name, data, datalen, iType);
}
/*-------------------------------------------------------------------------*/
NXstatus NXgetattrinfo (NXhandle fid, int *iN)
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxgetattrinfo(pFunc->pNexusData, iN);
}
/*-------------------------------------------------------------------------*/
NXstatus NXgetgroupID (NXhandle fileid, NXlink* sRes)
{
pNexusFunction pFunc = handleToNexusFunc(fileid);
return pFunc->nxgetgroupID(pFunc->pNexusData, sRes);
}
/*-------------------------------------------------------------------------*/
NXstatus NXgetgroupinfo (NXhandle fid, int *iN, NXname pName, NXname pClass)
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxgetgroupinfo(pFunc->pNexusData, iN, pName, pClass);
}
/*-------------------------------------------------------------------------*/
NXstatus NXsameID (NXhandle fileid, NXlink* pFirstID, NXlink* pSecondID)
{
pNexusFunction pFunc = handleToNexusFunc(fileid);
return pFunc->nxsameID(pFunc->pNexusData, pFirstID, pSecondID);
}
/*-------------------------------------------------------------------------*/
NXstatus NXinitattrdir (NXhandle fid)
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxinitattrdir(pFunc->pNexusData);
}
/*-------------------------------------------------------------------------*/
NXstatus NXsetnumberformat (NXhandle fid,
int type, char *format)
{
pNexusFunction pFunc = handleToNexusFunc(fid);
if(pFunc->nxsetnumberformat != NULL)
{
return pFunc->nxsetnumberformat(pFunc->pNexusData,type,format);
}
else
{
/*
silently ignore this. Most NeXus file formats do not require
this
*/
return NX_OK;
}
}
/*-------------------------------------------------------------------------*/
NXstatus NXinitgroupdir (NXhandle fid)
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxinitgroupdir(pFunc->pNexusData);
}
/*----------------------------------------------------------------------*/
NXstatus NXinquirefile(NXhandle handle, char *filename,
int filenameBufferLength){
pFileStack fileStack;
char *pPtr = NULL;
int length;
fileStack = (pFileStack)handle;
pPtr = peekFilenameOnStack(fileStack);
if(pPtr != NULL){
length = strlen(pPtr);
if(length > filenameBufferLength){
length = filenameBufferLength -1;
}
memset(filename,0,filenameBufferLength);
memcpy(filename,pPtr, length);
return NX_OK;
} else {
return NX_ERROR;
}
}
/*------------------------------------------------------------------------*/
NXstatus NXisexternalgroup(NXhandle fid, CONSTCHAR *name, CONSTCHAR *class,
char *url, int urlLen){
int status, attStatus, length = 1023, type = NX_CHAR;
ErrFunc oldError;
char nxurl[1024];
pNexusFunction pFunc = handleToNexusFunc(fid);
status = pFunc->nxopengroup(pFunc->pNexusData, name,class);
if(status != NX_OK){
return status;
}
oldError = NXMGetError();
NXIReportError = NXNXNoReport;
attStatus = NXgetattr(fid,"napimount",nxurl,&length, &type);
NXIReportError = oldError;
pFunc->nxclosegroup(pFunc->pNexusData);
if(attStatus == NX_OK){
length = strlen(nxurl);
if(length > urlLen){
length = urlLen - 1;
}
memset(url,0,urlLen);
memcpy(url,nxurl,length);
return attStatus;
} else {
return NX_ERROR;
}
}
/*------------------------------------------------------------------------*/
NXstatus NXlinkexternal(NXhandle fid, CONSTCHAR *name, CONSTCHAR *class,
CONSTCHAR *url){
int status, type = NX_CHAR, length;
pNexusFunction pFunc = handleToNexusFunc(fid);
status = pFunc->nxopengroup(pFunc->pNexusData,name,class);
if(status != NX_OK){
return status;
}
length = strlen(url);
status = NXputattr(fid, "napimount",(void *)url,length, type);
if(status != NX_OK){
return status;
}
pFunc->nxclosegroup(pFunc->pNexusData);
return NX_OK;
}
/*------------------------------------------------------------------------
Implementation of NXopenpath.
--------------------------------------------------------------------------*/
static int isDataSetOpen(NXhandle hfil)
{
NXlink id;
/*
This uses the (sensible) feauture that NXgetdataID returns NX_ERROR
when no dataset is open
*/
if(NXgetdataID(hfil,&id) == NX_ERROR)
{
return 0;
}
else
{
return 1;
}
}
/*----------------------------------------------------------------------*/
static int isRoot(NXhandle hfil)
{
NXlink id;
/*
This uses the feauture that NXgetgroupID returns NX_ERROR
when we are at root level
*/
if(NXgetgroupID(hfil,&id) == NX_ERROR)
{
return 1;
}
else
{
return 0;
}
}
/*--------------------------------------------------------------------
copies the next path element into element.
returns a pointer into path beyond the extracted path
---------------------------------------------------------------------*/
static char *extractNextPath(char *path, NXname element)
{
char *pPtr, *pStart;
int length;
pPtr = path;
/*
skip over leading /
*/
if(*pPtr == '/')
{
pPtr++;
}
pStart = pPtr;
/*
find next /
*/
pPtr = strchr(pStart,'/');
if(pPtr == NULL)
{
/*
this is the last path element
*/
strcpy(element,pStart);
return NULL;
} else {
length = pPtr - pStart;
strncpy(element,pStart,length);
element[length] = '\0';
}
return pPtr + 1;
}
/*-------------------------------------------------------------------*/
static NXstatus gotoRoot(NXhandle hfil)
{
int status;
if(isDataSetOpen(hfil))
{
status = NXclosedata(hfil);
if(status == NX_ERROR)
{
return status;
}
}
while(!isRoot(hfil))
{
status = NXclosegroup(hfil);
if(status == NX_ERROR)
{
return status;
}
}
return NX_OK;
}
/*--------------------------------------------------------------------*/
static int isRelative(char *path)
{
if(path[0] == '.' && path[1] == '.')
return 1;
else
return 0;
}
/*------------------------------------------------------------------*/
static NXstatus moveOneDown(NXhandle hfil)
{
if(isDataSetOpen(hfil))
{
return NXclosedata(hfil);
}
else
{
return NXclosegroup(hfil);
}
}
/*-------------------------------------------------------------------
returns a pointer to the remaining path string to move up
--------------------------------------------------------------------*/
static char *moveDown(NXhandle hfil, char *path, int *code)
{
int status;
NXname pathElem;
char *pPtr;
*code = NX_OK;
if(path[0] == '/')
{
*code = gotoRoot(hfil);
return path;
}
else
{
pPtr = path;
while(isRelative(pPtr))
{
status = moveOneDown(hfil);
if(status == NX_ERROR)
{
*code = status;
return pPtr;
}
pPtr += 3;
}
return pPtr;
}
}
/*--------------------------------------------------------------------*/
static NXstatus stepOneUp(NXhandle hfil, char *name)
{
int status, datatype;
NXname name2, xclass;
char pBueffel[256];
/*
catch the case when we are there: i.e. no further stepping
necessary. This can happen with paths like ../
*/
if(strlen(name) < 1)
{
return NX_OK;
}
NXinitgroupdir(hfil);
while(NXgetnextentry(hfil,name2,xclass,&datatype) != NX_EOD)
{
if(strcmp(name2,name) == 0)
{
if(strcmp(xclass,"SDS") == 0)
{
return NXopendata(hfil,name);
}
else
{
return NXopengroup(hfil,name,xclass);
}
}
}
snprintf(pBueffel,255,"ERROR: NXopenpath cannot step into %s",name);
NXIReportError (NXpData, pBueffel);
return NX_ERROR;
}
/*--------------------------------------------------------------------*/
static NXstatus stepOneGroupUp(NXhandle hfil, char *name)
{
int status, datatype;
NXname name2, xclass;
char pBueffel[256];
/*
catch the case when we are there: i.e. no further stepping
necessary. This can happen with paths like ../
*/
if(strlen(name) < 1)
{
return NX_OK;
}
NXinitgroupdir(hfil);
while(NXgetnextentry(hfil,name2,xclass,&datatype) != NX_EOD)
{
if(strcmp(name2,name) == 0)
{
if(strcmp(xclass,"SDS") == 0)
{
return NX_EOD;
}
else
{
return NXopengroup(hfil,name,xclass);
}
}
}
snprintf(pBueffel,255,"ERROR: NXopenpath cannot step into %s",name);
NXIReportError (NXpData, pBueffel);
return NX_ERROR;
}
/*---------------------------------------------------------------------*/
NXstatus NXopenpath(NXhandle hfil, CONSTCHAR *path)
{
int status, run = 1;
NXname pathElement;
char *pPtr;
if(hfil == NULL || path == NULL)
{
NXIReportError(NXpData,
"ERROR: NXopendata needs both a file handle and a path string");
return NX_ERROR;
}
pPtr = moveDown(hfil,(char *)path,&status);
if(status != NX_OK)
{
NXIReportError (NXpData,
"ERROR: NXopendata failed to move down in hierarchy");
return status;
}
while(run == 1)
{
pPtr = extractNextPath(pPtr, pathElement);
status = stepOneUp(hfil,pathElement);
if(status != NX_OK)
{
return status;
}
if(pPtr == NULL)
{
run = 0;
}
}
return NX_OK;
}
/*---------------------------------------------------------------------*/
NXstatus NXopengrouppath(NXhandle hfil, CONSTCHAR *path)
{
int status, run = 1;
NXname pathElement;
char *pPtr;
if(hfil == NULL || path == NULL)
{
NXIReportError(NXpData,
"ERROR: NXopendata needs both a file handle and a path string");
return NX_ERROR;
}
pPtr = moveDown(hfil,(char *)path,&status);
if(status != NX_OK)
{
NXIReportError (NXpData,
"ERROR: NXopendata failed to move down in hierarchy");
return status;
}
while(run == 1)
{
pPtr = extractNextPath(pPtr, pathElement);
status = stepOneGroupUp(hfil,pathElement);
if(status == NX_ERROR)
{
return status;
}
if(pPtr == NULL || status == NX_EOD)
{
run = 0;
}
}
return NX_OK;
}
NXstatus NXIprintlink(NXhandle fid, NXlink* link)
{
pNexusFunction pFunc = handleToNexusFunc(fid);
return pFunc->nxprintlink(pFunc->pNexusData, link);
}
/*--------------------------------------------------------------------
format NeXus time. Code needed in every NeXus file driver
---------------------------------------------------------------------*/
char *NXIformatNeXusTime(){
char *timeData;
time_t timer;
char* time_buffer = NULL;
struct tm *time_info;
const char* time_format;
long gmt_offset;
#ifdef USE_FTIME
struct timeb timeb_struct;
#endif
time_buffer = (char *)malloc(64*sizeof(char));
if(!time_buffer){
NXIReportError(NXpData,"Failed to allocate buffer for time data");
return NULL;
}
#ifdef NEED_TZSET
tzset();
#endif
time(&timer);
#ifdef USE_FTIME
ftime(&timeb_struct);
gmt_offset = -timeb_struct.timezone * 60;
if (timeb_struct.dstflag != 0)
{
gmt_offset += 3600;
}
#else
time_info = gmtime(&timer);
if (time_info != NULL)
{
gmt_offset = (long)difftime(timer, mktime(time_info));
}
else
{
NXIReportError (NXpData,
"Your gmtime() function does not work ... timezone information will be incorrect\n");
gmt_offset = 0;
}
#endif
time_info = localtime(&timer);
if (time_info != NULL)
{
if (gmt_offset < 0)
{
time_format = "%04d-%02d-%02d %02d:%02d:%02d-%02d%02d";
}
else
{
time_format = "%04d-%02d-%02d %02d:%02d:%02d+%02d%02d";
}
sprintf(time_buffer, time_format,
1900 + time_info->tm_year,
1 + time_info->tm_mon,
time_info->tm_mday,
time_info->tm_hour,
time_info->tm_min,
time_info->tm_sec,
abs(gmt_offset / 3600),
abs((gmt_offset % 3600) / 60)
);
}
else
{
strcpy(time_buffer, "1970-01-01 00:00:00+0000");
}
return time_buffer;
}
/*----------------------------------------------------------------------
F77 - API - Support - Routines
----------------------------------------------------------------------*/
/*
* We store the whole of the NeXus file in the array - that way
* we can just pass the array name to C as it will be a valid
* NXhandle. We could store the NXhandle value in the FORTRAN array
* instead, but that would mean writing far more wrappers
*/
NXstatus NXfopen(char * filename, NXaccess* am,
NexusFunction* pHandle)
{
NXstatus ret;
NXhandle fileid = NULL;
ret = NXopen(filename, *am, &fileid);
if (ret == NX_OK)
{
memcpy(pHandle, fileid, sizeof(NexusFunction));
}
else
{
memset(pHandle, 0, sizeof(NexusFunction));
}
if (fileid != NULL)
{
free(fileid);
}
return ret;
}
/*
* The pHandle from FORTRAN is a pointer to a static FORTRAN
* array holding the NexusFunction structure. We need to malloc()
* a temporary copy as NXclose will try to free() this
*/
NXstatus NXfclose (NexusFunction* pHandle)
{
NXhandle h;
NXstatus ret;
h = (NXhandle)malloc(sizeof(NexusFunction));
memcpy(h, pHandle, sizeof(NexusFunction));
ret = NXclose(&h); /* does free(h) */
memset(pHandle, 0, sizeof(NexusFunction));
return ret;
}
/*---------------------------------------------------------------------*/
NXstatus NXfflush(NexusFunction* pHandle)
{
NXhandle h;
NXstatus ret;
h = (NXhandle)malloc(sizeof(NexusFunction));
memcpy(h, pHandle, sizeof(NexusFunction));
ret = NXflush(&h); /* modifies and reallocates h */
memcpy(pHandle, h, sizeof(NexusFunction));
return ret;
}
/*----------------------------------------------------------------------*/
NXstatus NXfmakedata(NXhandle fid, char *name, int *pDatatype,
int *pRank, int dimensions[])
{
NXstatus ret;
static char buffer[256];
int i, *reversed_dimensions;
reversed_dimensions = (int*)malloc(*pRank * sizeof(int));
if (reversed_dimensions == NULL)
{
sprintf (buffer,
"ERROR: Cannot allocate space for array rank of %d in NXfmakedata",
*pRank);
NXIReportError (NXpData, buffer);
return NX_ERROR;
}
/*
* Reverse dimensions array as FORTRAN is column major, C row major
*/
for(i=0; i < *pRank; i++)
{
reversed_dimensions[i] = dimensions[*pRank - i - 1];
}
ret = NXmakedata(fid, name, *pDatatype, *pRank, reversed_dimensions);
free(reversed_dimensions);
return ret;
}
NXstatus NXfcompmakedata(NXhandle fid, char *name,
int *pDatatype,
int *pRank, int dimensions[],
int *compression_type, int chunk[])
{
NXstatus ret;
static char buffer[256];
int i, *reversed_dimensions, *reversed_chunk;
reversed_dimensions = (int*)malloc(*pRank * sizeof(int));
reversed_chunk = (int*)malloc(*pRank * sizeof(int));
if (reversed_dimensions == NULL || reversed_chunk == NULL)
{
sprintf (buffer,
"ERROR: Cannot allocate space for array rank of %d in NXfcompmakedata",
*pRank);
NXIReportError (NXpData, buffer);
return NX_ERROR;
}
/*
* Reverse dimensions array as FORTRAN is column major, C row major
*/
for(i=0; i < *pRank; i++)
{
reversed_dimensions[i] = dimensions[*pRank - i - 1];
reversed_chunk[i] = chunk[*pRank - i - 1];
}
ret = NXcompmakedata(fid, name, *pDatatype, *pRank,
reversed_dimensions,*compression_type, reversed_chunk);
free(reversed_dimensions);
free(reversed_chunk);
return ret;
}
/*-----------------------------------------------------------------------*/
NXstatus NXfcompress(NXhandle fid, int *compr_type)
{
return NXcompress(fid,*compr_type);
}
/*-----------------------------------------------------------------------*/
NXstatus NXfputattr(NXhandle fid, char *name, void *data,
int *pDatalen, int *pIType)
{
return NXputattr(fid, name, data, *pDatalen, *pIType);
}
/*
* implement snprintf when it is not available
*/
int nxisnprintf(char* buffer, int len, const char* format, ... )
{
int ret;
va_list valist;
va_start(valist,format);
ret = vsprintf(buffer, format, valist);
va_end(valist);
return ret;
}
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