Structural mods to nexus.dic following Mark Koenneckes review.
Added support to write 2D polar angle array. r1540 | ffr | 2007-02-22 16:11:55 +1100 (Thu, 22 Feb 2007) | 3 lines
This commit is contained in:
Ferdi Franceschini
committed by
Douglas Clowes
Douglas Clowes
parent
d2450cde32
commit
b9da38d603
@@ -12,7 +12,8 @@ dataName=histogram
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inst=instrument
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detector=detector
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monochromator=monochromator
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thetadim=128
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padim0=512
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padim1=128
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scan_variable=scanvar
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samplemotor=samplemotor
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#---------- NXentry level
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@@ -35,14 +36,11 @@ sname=/$(entryName),NXentry/$(inst),NXinstrument/source,NXsource/SDS name \
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-type NX_CHAR -rank 1
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stype=/$(entryName),NXentry/$(inst),NXinstrument/source,NXsource/SDS type -type NX_CHAR -rank 1
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sprobe=/$(entryName),NXentry/$(inst),NXinstrument/source,NXsource/SDS probe -type NX_CHAR -rank 1
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#----------------- NXcrystal
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clambda=/$(entryName),NXentry/$(inst),NXinstrument/monochromator_crystal,NXcrystal/SDS wavelength -type NX_FLOAT32 -attr {units,Angstrom}
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ctype=/$(entryName),NXentry/$(inst),NXinstrument/monochromator_crystal,NXcrystal/SDS type -type NX_CHAR
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#------------- counter
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#-------------- Detector
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# histogram data
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dradius=/$(entryName),NXentry/$(inst),NXinstrument/$(detector),NXdetector/SDS distance -type NX_FLOAT32
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dtheta=/$(entryName),NXentry/$(inst),NXinstrument/$(detector),NXdetector/SDS polar_angle -type NX_FLOAT32 -LZW -rank 1 -dim {$(thetadim)} -attr {units,degree}
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dtheta=/$(entryName),NXentry/$(inst),NXinstrument/$(detector),NXdetector/SDS polar_angle -type NX_FLOAT32 -LZW -rank 2 -dim {$(padim0),$(padim1)} -attr {units,radians}
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dcounts=/$(entryName),NXentry/$(inst),NXinstrument/$(detector),NXdetector/SDS \
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data -type NX_INT32 -LZW -rank 2 -dim {$(dim0),$(dim1)} \
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@@ -55,41 +53,44 @@ ddesc=/$(entryName),NXentry/$(inst),NXinstrument/$(detector),NXdetector/SDS des
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dtype=/$(entryName),NXentry/$(inst),NXinstrument/$(detector),NXdetector/SDS type -type NX_CHAR
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dlayout=/$(entryName),NXentry/$(inst),NXinstrument/$(detector),NXdetector/SDS layout -type NX_CHAR
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#----------------- NXcrystal
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clambda=/$(entryName),NXentry/$(inst),NXinstrument/$(monochromator),NXcrystal/SDS wavelength -type NX_FLOAT32 -attr {units,Angstrom}
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ctype=/$(entryName),NXentry/$(inst),NXinstrument/$(monochromator),NXcrystal/SDS type -type NX_CHAR
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#--------------- NXmonochromator
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mom=/$(entryName),NXentry/$(inst),NXinstrument/$(monochromator),NXmonochromator/mom,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,mom}
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mchi=/$(entryName),NXentry/$(inst),NXinstrument/$(monochromator),NXmonochromator/mchi,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,mchi}
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mphi=/$(entryName),NXentry/$(inst),NXinstrument/$(monochromator),NXmonochromator/mphi,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,mphi}
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mx=/$(entryName),NXentry/$(inst),NXinstrument/$(monochromator),NXmonochromator/mx,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,mx}
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my=/$(entryName),NXentry/$(inst),NXinstrument/$(monochromator),NXmonochromator/my,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,my}
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mtth=/$(entryName),NXentry/$(inst),NXinstrument/$(monochromator),NXmonochromator/mtth,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,mtth}
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mth=/$(entryName),NXentry/$(inst),NXinstrument/$(monochromator),NXmonochromator/mth,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,mth}
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mom=/$(entryName),NXentry/$(inst),NXinstrument/$(monochromator),NXcrystal/SDS mom -type NX_FLOAT32 -attr {units,degree} -attr {long_name,mom}
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mchi=/$(entryName),NXentry/$(inst),NXinstrument/$(monochromator),NXcrystal/SDS mchi -type NX_FLOAT32 -attr {units,degree} -attr {long_name,mchi}
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mphi=/$(entryName),NXentry/$(inst),NXinstrument/$(monochromator),NXcrystal/SDS mphi -type NX_FLOAT32 -attr {units,degree} -attr {long_name,mphi}
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mx=/$(entryName),NXentry/$(inst),NXinstrument/$(monochromator),NXcrystal/SDS mx -type NX_FLOAT32 -attr {units,degree} -attr {long_name,mx}
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my=/$(entryName),NXentry/$(inst),NXinstrument/$(monochromator),NXcrystal/SDS my -type NX_FLOAT32 -attr {units,degree} -attr {long_name,my}
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mtth=/$(entryName),NXentry/$(inst),NXinstrument/$(monochromator),NXcrystal/SDS mtth -type NX_FLOAT32 -attr {units,degree} -attr {long_name,mtth}
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mth=/$(entryName),NXentry/$(inst),NXinstrument/$(monochromator),NXcrystal/SDS mth -type NX_FLOAT32 -attr {units,degree} -attr {long_name,mth}
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#--------------- NXsample
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saname=/$(entryName),NXentry/sample,NXsample/SDS name -type NX_CHAR
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sarot=/$(entryName),NXentry/sample,NXsample/SDS rotation_angle -type NX_FLOAT32 -attr {units,degree}
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som=/$(entryName),NXentry/sample,NXsample/som,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,som}
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schi=/$(entryName),NXentry/sample,NXsample/schi,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,schi}
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sphi=/$(entryName),NXentry/sample,NXsample/sphi,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,sphi}
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sx=/$(entryName),NXentry/sample,NXsample/sx,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,sx}
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sy=/$(entryName),NXentry/sample,NXsample/sy,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,sy}
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stth=/$(entryName),NXentry/sample,NXsample/stth,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,stth}
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sth=/$(entryName),NXentry/sample,NXsample/sth,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,sth}
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som=/$(entryName),NXentry/sample,NXsample/SDS som -type NX_FLOAT32 -attr {units,degree} -attr {long_name,som}
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schi=/$(entryName),NXentry/sample,NXsample/SDS schi -type NX_FLOAT32 -attr {units,degree} -attr {long_name,schi}
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sphi=/$(entryName),NXentry/sample,NXsample/SDS sphi -type NX_FLOAT32 -attr {units,degree} -attr {long_name,sphi}
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sx=/$(entryName),NXentry/sample,NXsample/SDS sx -type NX_FLOAT32 -attr {units,degree} -attr {long_name,sx}
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sy=/$(entryName),NXentry/sample,NXsample/SDS sy -type NX_FLOAT32 -attr {units,degree} -attr {long_name,sy}
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stth=/$(entryName),NXentry/sample,NXsample/SDS stth -type NX_FLOAT32 -attr {units,degree} -attr {long_name,stth}
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sth=/$(entryName),NXentry/sample,NXsample/SDS sth -type NX_FLOAT32 -attr {units,degree} -attr {long_name,sth}
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# Slit motors
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ss1u=/$(entryName),NXentry/sample,NXsample/ss1u,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss1u}
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ss1d=/$(entryName),NXentry/sample,NXsample/ss1d,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss1d}
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ss1l=/$(entryName),NXentry/sample,NXsample/ss1l,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss1l}
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ss1r=/$(entryName),NXentry/sample,NXsample/ss1r,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss1r}
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ss1vg=/$(entryName),NXentry/sample,NXsample/ss1vg,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss1vg}
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ss1vo=/$(entryName),NXentry/sample,NXsample/ss1vo,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss1vo}
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ss1hg=/$(entryName),NXentry/sample,NXsample/ss1hg,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss1hg}
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ss1ho=/$(entryName),NXentry/sample,NXsample/ss1ho,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss1ho}
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ss2u=/$(entryName),NXentry/sample,NXsample/ss2u,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss2u}
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ss2d=/$(entryName),NXentry/sample,NXsample/ss2d,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss2d}
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ss2l=/$(entryName),NXentry/sample,NXsample/ss2l,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss2l}
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ss2r=/$(entryName),NXentry/sample,NXsample/ss2r,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss2r}
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ss2vg=/$(entryName),NXentry/sample,NXsample/ss2vg,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss2vg}
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ss2vo=/$(entryName),NXentry/sample,NXsample/ss2vo,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss2vo}
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ss2hg=/$(entryName),NXentry/sample,NXsample/ss2hg,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss2hg}
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ss2ho=/$(entryName),NXentry/sample,NXsample/ss2ho,NXpositioner/SDS value -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss2ho}
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ss1u=/$(entryName),NXentry/slits,NXfilter/SDS ss1u -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss1u}
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ss1d=/$(entryName),NXentry/slits,NXfilter/SDS ss1d -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss1d}
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ss1l=/$(entryName),NXentry/slits,NXfilter/SDS ss1l -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss1l}
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ss1r=/$(entryName),NXentry/slits,NXfilter/SDS ss1r -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss1r}
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ss1vg=/$(entryName),NXentry/slits,NXfilter/SDS ss1vg -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss1vg}
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ss1vo=/$(entryName),NXentry/slits,NXfilter/SDS ss1vo -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss1vo}
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ss1hg=/$(entryName),NXentry/slits,NXfilter/SDS ss1hg -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss1hg}
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ss1ho=/$(entryName),NXentry/slits,NXfilter/SDS ss1ho -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss1ho}
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ss2u=/$(entryName),NXentry/slits,NXfilter/SDS ss2u -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss2u}
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ss2d=/$(entryName),NXentry/slits,NXfilter/SDS ss2d -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss2d}
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ss2l=/$(entryName),NXentry/slits,NXfilter/SDS ss2l -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss2l}
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ss2r=/$(entryName),NXentry/slits,NXfilter/SDS ss2r -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss2r}
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ss2vg=/$(entryName),NXentry/slits,NXfilter/SDS ss2vg -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss2vg}
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ss2vo=/$(entryName),NXentry/slits,NXfilter/SDS ss2vo -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss2vo}
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ss2hg=/$(entryName),NXentry/slits,NXfilter/SDS ss2hg -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss2hg}
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ss2ho=/$(entryName),NXentry/slits,NXfilter/SDS ss2ho -type NX_FLOAT32 -attr {units,degree} -attr {long_name,ss2ho}
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#----------------NXdata ------------------------------------------------
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scandata=/$(entryName),NXentry/scan_data,NXdata/NXVGROUP
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scanvar=/$(entryName),NXentry/scan_variable,NXdata/NXVGROUP
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@@ -46,11 +46,30 @@ set dradius 1.25
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set ndect 128
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set tubedia 0.0254
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set pi 3.1415926
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#set angsep [expr $tubedia/$dradius *(180/$pi)]
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set angsep 1.25
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# stthmin = (180 - (1.25*127))/2
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proc polar_angle {dradius det_angle active_length zi zj det_rot y_offset dim0 dim1} {
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global tharr
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set angsep [expr $det_angle / ($dim1-1)]
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set ysep [expr $active_length/($dim0-1)]
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set imid [expr ($dim0 -1 )/2.0]
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set jmid [expr ($dim1 -1 )/2.0]
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for {set i 0} {$i < $dim0} {incr i} {
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set height [expr $y_offset - ($i - $imid)*$ysep]
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for {set j 0} {$j < $dim1} {incr j} {
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set alpha [expr $det_rot - ($j - $jmid)*$angsep]
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set pang [expr acos($dradius * cos($alpha)/sqrt($dradius*$dradius + $height*$height))]
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set tharr([expr $i*$dim1+$j]) $pang
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}
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}
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}
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proc addnxentry {nxobj entryname scanVariable scanVarPos scanVarStep} {
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global dradius ndect angsep;
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set dim0 [SplitReply [hmm configure dim0]]
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set dim1 [SplitReply [hmm configure dim1]]
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putcommon $nxobj $entryname $scanVariable
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putcrystal $nxobj
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putmonitor $nxobj
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@@ -58,12 +77,13 @@ putsample $nxobj
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set scanVar_value [string trim [lindex [split [$scanVariable] =] 1]]
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$nxobj putfloat $scanVariable $scanVar_value
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# Add thetamin and stth to tharr(i)
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set sampletwotheta [string trim [lindex [split [stth] =] 1]]
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for {set i 0} {$i < $ndect} {incr i} {
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set tharr($i) [expr ($i-63.5)*$angsep + $sampletwotheta]
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}
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$nxobj updatedictvar thetadim $ndect
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$nxobj putarray dtheta tharr $ndect
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# set sampletwotheta [string trim [lindex [split [stth] =] 1]]
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# for {set i 0} {$i < $ndect} {incr i} {
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# set tharr($i) [expr ($i-63.5)*$angsep + $sampletwotheta]
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# }
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# $nxobj updatedictvar thetadim $ndect
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# $nxobj putarray dtheta tharr $ndect
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putpolar_angle $nxobj $dim0 $dim1
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$nxobj puttext dtype He-3 position sensitive detector, tube active length=335+/-5mm, tube diameter=25.4 +/- 0.8mm
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$nxobj puttext ddesc 128 He-3 proportional counter detector tubes (GE Energy Reuter Stokes Inc. item=RS-P4-0814-217)
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$nxobj putfloat dradius $dradius
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@@ -103,6 +123,21 @@ proc putmonitor {nxobj} {
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$nxobj putfloat mdistance [getVal [sics_bm_distance]]
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}
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proc putpolar_angle {nxobj dim0 dim1} {
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global tharr
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set det_radius_mm [SplitReply [detector_radius_mm]]
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set det_angle_rad [SplitReply [detector_angle_rad]]
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set det_active_ht_mm [SplitReply [detector_active_height_mm]]
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set det_rot_rad [ expr [SplitReply [stth]]/[SplitReply [deg_per_rad]] ]
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set det_zxp [ SplitReply [detector_zero_xpixel]]
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set det_zyp [ SplitReply [detector_zero_ypixel]]
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polar_angle $det_radius_mm $det_angle_rad $det_active_ht_mm $det_zxp $det_zyp $det_rot_rad 0 $dim0 $dim1
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$nxobj updatedictvar padim0 $dim0
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$nxobj updatedictvar padim1 $dim1
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$nxobj putgenarray dtheta tharr [expr $dim0 * $dim1]
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}
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proc putsample {nxobj} {
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$nxobj puttext saname [getVal [Sample]]
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}
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