diff --git a/site_ansto/instrument/qld/MANIFEST.TXT b/site_ansto/instrument/qld/MANIFEST.TXT
old mode 100644
new mode 100755
index 80d4dd24..5779a3c4
--- a/site_ansto/instrument/qld/MANIFEST.TXT
+++ b/site_ansto/instrument/qld/MANIFEST.TXT
@@ -4,6 +4,5 @@ hipadaba_configuration.tcl
 hpaths.tcl
 koala.hdd
 troubleshoot_setup.tcl
-extraconfig.tcl
 InstXML.xml
 sics_simulation.tcl
diff --git a/site_ansto/instrument/reflectometer/MANIFEST.TXT b/site_ansto/instrument/reflectometer/MANIFEST.TXT
old mode 100644
new mode 100755
index 4e5b24ad..ce262adc
--- a/site_ansto/instrument/reflectometer/MANIFEST.TXT
+++ b/site_ansto/instrument/reflectometer/MANIFEST.TXT
@@ -2,7 +2,6 @@ runsics_def.py
 platypus_configuration.tcl
 sics_ports.tcl
 script_validator_ports.tcl
-extraconfig.tcl
 config
 util
 hostport_config.tcl
diff --git a/site_ansto/instrument/rsd/MANIFEST.TXT b/site_ansto/instrument/rsd/MANIFEST.TXT
old mode 100644
new mode 100755
index 23eab905..e8c34b80
--- a/site_ansto/instrument/rsd/MANIFEST.TXT
+++ b/site_ansto/instrument/rsd/MANIFEST.TXT
@@ -2,7 +2,6 @@ runsics_def.py
 sics_ports.tcl
 script_validator_ports.tcl
 kowari_configuration.tcl
-extraconfig.tcl
 config
 util
 hostport_config.tcl
diff --git a/site_ansto/instrument/sans/MANIFEST.TXT b/site_ansto/instrument/sans/MANIFEST.TXT
old mode 100644
new mode 100755
index 930f85a3..69bc15f9
--- a/site_ansto/instrument/sans/MANIFEST.TXT
+++ b/site_ansto/instrument/sans/MANIFEST.TXT
@@ -2,7 +2,6 @@ runsics_def.py
 quokka_configuration.tcl
 sics_ports.tcl
 script_validator_ports.tcl
-extraconfig.tcl
 config
 util
 hostport_config.tcl