imagej/ch.psi.imagej.zmq
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Added checkbox to flip the received image in x and y

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Updated Readme
This commit is contained in:
ebner 2013-09-20 14:57:00 +02:00
parent b9f28a3eaa
commit 70fd074d19
3 changed files with 62 additions and 8 deletions
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6
ch.psi.imagej.zeromq/README.md
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@ -15,3 +15,9 @@ Installation
============ ============
To install the plugin into ImageJ just drop the build jar file into the plugins directory of ImageJ. Afterwards (re)start ImageJ. To install the plugin into ImageJ just drop the build jar file into the plugins directory of ImageJ. Afterwards (re)start ImageJ.
Usage
=====
While using the ZeroMQ Viewer Plugin ImageJ need to be configured to have more memory. This can be done in the `run` file located in the ImageJ discribution.
Add/Modify following flag: `-Xmx1024m`

2
ch.psi.imagej.zeromq/pom.xml
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@ -3,7 +3,7 @@
<modelVersion>4.0.0</modelVersion> <modelVersion>4.0.0</modelVersion>
<groupId>ch.psi</groupId> <groupId>ch.psi</groupId>
<artifactId>ch.psi.imagej.zeromq</artifactId> <artifactId>ch.psi.imagej.zeromq</artifactId>
<version>0.0.7</version> <version>0.0.8</version>
<dependencies> <dependencies>
<dependency> <dependency>

58
ch.psi.imagej.zeromq/src/main/java/ch/psi/imagej/zeromq/ZeroMQViewer.java
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@ -6,7 +6,9 @@ package ch.psi.imagej.zeromq;
// Mark Rivers, University of Chicago // Mark Rivers, University of Chicago
import ij.*; import ij.*;
import ij.process.*; import ij.process.*;
import java.awt.*; import java.awt.*;
import ij.plugin.*; import ij.plugin.*;
import java.io.IOException; import java.io.IOException;
@ -29,13 +31,15 @@ import com.fasterxml.jackson.core.JsonFactory;
import com.fasterxml.jackson.core.type.TypeReference; import com.fasterxml.jackson.core.type.TypeReference;
import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.ObjectMapper;
public class ZeroMQViewer implements PlugIn { public class ZeroMQViewer implements PlugIn {
private static final Logger logger = Logger.getLogger(ZeroMQViewer.class.getName()); private static final Logger logger = Logger.getLogger(ZeroMQViewer.class.getName());
private ImagePlus img; private ImagePlus img;
private boolean flipX = false;
private boolean flipY = false;
private int imageSizeX = 2560; private int imageSizeX = 2560;
private int imageSizeY = 2160; private int imageSizeY = 2160;
@ -69,6 +73,10 @@ public class ZeroMQViewer implements PlugIn {
private ObjectMapper mapper = new ObjectMapper(new JsonFactory()); private ObjectMapper mapper = new ObjectMapper(new JsonFactory());
private HeaderInfo hinfo = new HeaderInfo(); private HeaderInfo hinfo = new HeaderInfo();
private JLabel lblFlip;
private JPanel panel;
private JCheckBox chckbxX;
private JCheckBox chckbxY;
public void run(String arg) { public void run(String arg) {
IJ.showStatus("Running ZeroMQ Viewer"); IJ.showStatus("Running ZeroMQ Viewer");
@ -202,7 +210,15 @@ public class ZeroMQViewer implements PlugIn {
// TODO Check whether this is needed // TODO Check whether this is needed
short[] shorts = new short[content.length / 2]; short[] shorts = new short[content.length / 2];
ByteBuffer.wrap(content).order(ByteOrder.LITTLE_ENDIAN).asShortBuffer().get(shorts); ByteBuffer.wrap(content).order(ByteOrder.LITTLE_ENDIAN).asShortBuffer().get(shorts);
img.getProcessor().setPixels(shorts);
ImageProcessor ip = img.getProcessor();
ip.setPixels(shorts);
if(flipX){
ip.flipHorizontal();
}
if(flipY){
ip.flipVertical();
}
img.updateAndDraw(); img.updateAndDraw();
numImageUpdates++; numImageUpdates++;
@ -229,9 +245,9 @@ public class ZeroMQViewer implements PlugIn {
frame.getContentPane().add(panel_1, BorderLayout.CENTER); frame.getContentPane().add(panel_1, BorderLayout.CENTER);
GridBagLayout gbl_panel_1 = new GridBagLayout(); GridBagLayout gbl_panel_1 = new GridBagLayout();
gbl_panel_1.columnWidths = new int[] { 0, 0, 0 }; gbl_panel_1.columnWidths = new int[] { 0, 0, 0 };
gbl_panel_1.rowHeights = new int[] { 0, 0, 0, 0, 0, 0 }; gbl_panel_1.rowHeights = new int[] { 0, 0, 0, 0, 0, 0, 0 };
gbl_panel_1.columnWeights = new double[] { 0.0, 1.0, Double.MIN_VALUE }; gbl_panel_1.columnWeights = new double[] { 0.0, 1.0, Double.MIN_VALUE };
gbl_panel_1.rowWeights = new double[] { 0.0, 0.0, 0.0, 0.0, 0.0, Double.MIN_VALUE }; gbl_panel_1.rowWeights = new double[] { 0.0, 0.0, 0.0, 0.0, 1.0, 0.0, Double.MIN_VALUE };
panel_1.setLayout(gbl_panel_1); panel_1.setLayout(gbl_panel_1);
lblHostname = new JLabel("Hostname"); lblHostname = new JLabel("Hostname");
@ -322,10 +338,42 @@ public class ZeroMQViewer implements PlugIn {
} }
} }
}); });
lblFlip = new JLabel("Flip");
GridBagConstraints gbc_lblFlip = new GridBagConstraints();
gbc_lblFlip.insets = new Insets(0, 0, 5, 5);
gbc_lblFlip.gridx = 0;
gbc_lblFlip.gridy = 4;
panel_1.add(lblFlip, gbc_lblFlip);
panel = new JPanel();
GridBagConstraints gbc_panel = new GridBagConstraints();
gbc_panel.insets = new Insets(0, 0, 5, 0);
gbc_panel.fill = GridBagConstraints.BOTH;
gbc_panel.gridx = 1;
gbc_panel.gridy = 4;
panel_1.add(panel, gbc_panel);
chckbxX = new JCheckBox("X");
chckbxX.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
flipX = chckbxX.isSelected();
}
});
panel.add(chckbxX);
chckbxY = new JCheckBox("Y");
chckbxY.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
flipY = chckbxY.isSelected();
}
});
panel.add(chckbxY);
GridBagConstraints gbc_btnStart = new GridBagConstraints(); GridBagConstraints gbc_btnStart = new GridBagConstraints();
gbc_btnStart.anchor = GridBagConstraints.WEST; gbc_btnStart.anchor = GridBagConstraints.WEST;
gbc_btnStart.gridx = 1; gbc_btnStart.gridx = 1;
gbc_btnStart.gridy = 4; gbc_btnStart.gridy = 5;
panel_1.add(btnStart, gbc_btnStart); panel_1.add(btnStart, gbc_btnStart);
// Display the window. // Display the window.