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https://github.com/paulscherrerinstitute/ch.psi.imagej.hdf5.git
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Unified way to select datasets (replaced mechnism by JList)
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d9c2860759
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@ -16,6 +16,14 @@ import java.util.logging.Level;
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import java.util.logging.Logger;
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import java.util.logging.Logger;
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import java.awt.*;
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import java.awt.*;
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import javax.swing.BoxLayout;
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import javax.swing.DefaultListCellRenderer;
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import javax.swing.JLabel;
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import javax.swing.JList;
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import javax.swing.JPanel;
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import javax.swing.JScrollPane;
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import javax.swing.ScrollPaneConstants;
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import ncsa.hdf.object.*;
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import ncsa.hdf.object.*;
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import ncsa.hdf.object.h5.*;
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import ncsa.hdf.object.h5.*;
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import ncsa.hdf.hdf5lib.exceptions.HDF5Exception;
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import ncsa.hdf.hdf5lib.exceptions.HDF5Exception;
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@ -254,60 +262,44 @@ public class HDF5Reader implements PlugIn {
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if (datasets.size() < 1) {
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if (datasets.size() < 1) {
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IJ.error("The file does not contain datasets");
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IJ.error("The file does not contain datasets");
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} else if (datasets.size() > 1000) {
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} else {
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// TODO only display datasets >= 2D
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JList<Dataset> list = new JList<>(datasets.toArray(new Dataset[datasets.size()]));
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list.setCellRenderer(new DefaultListCellRenderer() {
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private static final long serialVersionUID = 1L;
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public Component getListCellRendererComponent(JList<?> list, Object value, int index, boolean isSelected, boolean cellHasFocus) {
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JLabel label = (JLabel) super.getListCellRendererComponent(list, value, index, isSelected, cellHasFocus);
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final Dataset d = ((Dataset) value);
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label.setText(d.getFullName()+" ("+d.getRank()+"D)");
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return label;
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logger.info("#######");
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for(Dataset d: datasets){
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logger.info(d.getFullName());
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}
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}
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logger.info("#######");
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});
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JScrollPane scroll = new JScrollPane(list);
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scroll.setVerticalScrollBarPolicy(ScrollPaneConstants.VERTICAL_SCROLLBAR_ALWAYS);
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JPanel panel = new JPanel();
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panel.setLayout(new BoxLayout(panel,BoxLayout.Y_AXIS));
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panel.add(scroll);
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// JPanel lpanel = new JPanel(new FlowLayout(FlowLayout.LEFT));
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// lpanel.add(new JLabel("Too much entries - Please enter the full path of the dataset to be displayed"));
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// panel.add(lpanel);
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// JPanel tpanel = new JPanel(new FlowLayout(FlowLayout.LEFT));
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// tpanel.add(new JLabel("Dataset: "));
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// JTextField tfield = new JTextField("",60);
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// tpanel.add(tfield);
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// panel.add(tpanel);
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gd = new GenericDialog("Variable Name Selection");
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gd = new GenericDialog("Variable Name Selection");
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gd.addMessage("There are lots of datasets in your file (check the log output which datasets are available)! Please enter the full path of the dataset to be displayed");
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gd.add(panel);
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gd.addStringField("Dataset", "");
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gd.addMessage("");
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gd.pack();
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gd.showDialog();
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gd.showDialog();
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if (!gd.wasCanceled()) {
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if (!gd.wasCanceled()) {
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String dsName = gd.getNextString();
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selectedDatasets = list.getSelectedValuesList();
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for(Dataset d: datasets){
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if(d.getFullName().equals(dsName)){
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selectedDatasets.add(d);
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}
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}
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if(selectedDatasets.isEmpty()){
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IJ.error("The file does not contain a variable with name " + "`" + dsName + "`!");
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}
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}
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} else {
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String[] varSelections = new String[datasets.size()];
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boolean[] defaultValues = new boolean[datasets.size()];
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for (int i = 0; i < datasets.size(); i++) {
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Dataset var = datasets.get(i);
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int rank = var.getRank();
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String title = rank + "D: " + var.getFullName() + " " + var.getDatatype().getDatatypeDescription() + "( ";
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long[] extent = var.getDims();
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for (int d = 0; d < rank; ++d) {
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if (d != 0){
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title += "x";
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}
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title += extent[d];
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}
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title += ")";
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varSelections[i] = title;
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defaultValues[i] = false;
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}
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logger.info("Add checkbox group with " + datasets.size() + " rows");
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gd.addCheckboxGroup(datasets.size(), 1, varSelections, defaultValues);
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addScrollBars(gd);
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gd.showDialog();
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if (!gd.wasCanceled()) {
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// Get selected datasets
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for (int i = 0; i < datasets.size(); ++i) {
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if (gd.getNextBoolean()) {
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selectedDatasets.add(datasets.get(i));
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}
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}
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}
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}
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}
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}
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@ -394,74 +386,4 @@ public class HDF5Reader implements PlugIn {
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stack.addSlice(null, g);
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stack.addSlice(null, g);
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stack.addSlice(null, b);
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stack.addSlice(null, b);
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}
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}
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/**
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* Add AWT scroll bars to the given container
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* @param pane Pane to add scrollbar to
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*/
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public static void addScrollBars(Container pane) {
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GridBagLayout layout = (GridBagLayout) pane.getLayout();
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// extract components
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int count = pane.getComponentCount();
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Component[] c = new Component[count];
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GridBagConstraints[] gbc = new GridBagConstraints[count];
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for (int i = 0; i < count; i++) {
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c[i] = pane.getComponent(i);
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gbc[i] = layout.getConstraints(c[i]);
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}
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// clear components
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pane.removeAll();
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layout.invalidateLayout(pane);
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// create new container panel
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Panel newPane = new Panel();
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GridBagLayout newLayout = new GridBagLayout();
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newPane.setLayout(newLayout);
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for (int i = 0; i < count; i++) {
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newLayout.setConstraints(c[i], gbc[i]);
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newPane.add(c[i]);
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}
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Frame f = new Frame();
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f.setLayout(new BorderLayout());
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f.add(newPane, BorderLayout.WEST);
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f.pack();
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final Dimension size = newPane.getSize();
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f.remove(newPane);
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f.dispose();
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// compute best size for scrollable viewport
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size.width += 15;
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size.height += 15;
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Dimension screen = Toolkit.getDefaultToolkit().getScreenSize();
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int maxWidth = 3 * screen.width / 4;
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int maxHeight = 3 * screen.height / 4;
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if (size.width > maxWidth){
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size.width = maxWidth;
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}
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if (size.height > maxHeight){
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size.height = maxHeight;
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}
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// create scroll pane
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ScrollPane scroll = new ScrollPane() {
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private static final long serialVersionUID = 1L;
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public Dimension getPreferredSize() {
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return size;
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}
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};
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scroll.add(newPane);
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// add scroll pane to original container
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GridBagConstraints constraints = new GridBagConstraints();
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constraints.anchor = GridBagConstraints.WEST;
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constraints.fill = GridBagConstraints.BOTH;
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constraints.weightx = 1.0;
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constraints.weighty = 1.0;
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layout.setConstraints(scroll, constraints);
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pane.add(scroll);
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}
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}
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}
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