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Updated information on how to startup Fiji

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ebner 2014-03-25 11:34:42 +01:00
parent 7858c5398d
commit 84cceda936
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Readme.md
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@ -14,13 +14,13 @@ This plugin requires ImageJ to be run with a Java 7 or greater JVM.
# Usage # Usage
Mac OS X: ## Mac OS X
``` ```
java -Djava.library.path=./lib/mac64 -Xmx3048m -jar ImageJ64.app/Contents/Resources/Java/ij.jar java -Djava.library.path=./lib/mac64 -Xmx3048m -jar ImageJ64.app/Contents/Resources/Java/ij.jar
``` ```
Linux: ## Linux
``` ```
java -Djava.library.path=./lib/linux64 -Xmx3048m -jar ij.jar java -Djava.library.path=./lib/linux64 -Xmx3048m -jar ij.jar
@ -28,6 +28,16 @@ java -Djava.library.path=./lib/linux64 -Xmx3048m -jar ij.jar
The `Xmx` setting is quite random it depends on how big hdf5 files you are planning to open. The `Xmx` setting is quite random it depends on how big hdf5 files you are planning to open.
# Fiji
Fiji currently comes with Java 6 bundled. As the HDF5 Plugin requires Java 7 or higher we have to instruct Fiji to use an alternative Java.
This can be done as follows:
```
cd <FIJI_HOME>
<fiji> --java-home /usr/lib/jvm/jre-1.7.0-openjdk.x86_64 -Djava.library.path=lib/linux64
```
# Development # Development
To create an all in one zip file for installation in a ImageJ installation use: To create an all in one zip file for installation in a ImageJ installation use:
`mvn clean compile assembly:assembly` `mvn clean compile assembly:assembly`