imagej/ch.psi.imagej.hdf5
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Hacked grouping of (2D) datasets into the code as a proof of principle

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This commit is contained in:
ebner 2014-10-01 14:42:44 +02:00
parent 966884310b
commit 2250170f04
1 changed files with 24 additions and 1 deletions
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25
src/main/java/ch/psi/imagej/hdf5/HDF5Reader.java
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@ -69,6 +69,29 @@ public class HDF5Reader implements PlugIn {
List<Dataset> datasets = HDF5Utilities.getDatasets(file);
SelectedDatasets selectedDatasets = selectDatasets(datasets);
// TODO Remove
// Hack as a proof of principle
if(selectedDatasets.isGroup()){
ImageStack stack = null;
for (Dataset var : selectedDatasets.getDatasets()) {
if(stack == null){
long[] dimensions= var.getDims();
stack = new ImageStack((int) dimensions[1], (int) dimensions[0]);
}
Object wholeDataset = var.read();
addSlice(stack, wholeDataset);
}
ImagePlus imp = new ImagePlus(filename, stack);
imp.resetDisplayRange();
imp.show();
return;
}
for (Dataset var : selectedDatasets.getDatasets()) {
// Read dataset attributes and properties
@ -286,7 +309,7 @@ public class HDF5Reader implements PlugIn {
JPanel panel = new JPanel();
panel.setLayout(new BoxLayout(panel,BoxLayout.Y_AXIS));
panel.add(scroll);
JCheckBox checkbox = new JCheckBox("Group Datasets");
JCheckBox checkbox = new JCheckBox("Group Datasets (2D datasets only)");
panel.add(checkbox);
gd = new GenericDialog("Variable Name Selection");