catching up
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<html><head><title>Time of Flight Measuement for Injector and Ring Cyclotron Turn Number Ascertainment, TINA</title></head>
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<body>
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<h5 style="color:gray;">June 2024, Jan Chrin, Pierre-André Duperrex, Waldamar Koprek</h5>
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<h5 style="color:gray;">June 2024, Jan Chrin, Pierre-André Duperrex, Alessandro Facchetti, Waldamar Koprek</h5>
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<h4> <span style="color: red;">T</span>ime of Flight Measurement for <span style="color: red;">I</span>njector and Ring Cyclotron Turn <span style="color: red;">N</span>umber <span style="color: red;">A</span>scertainment, <span style="color: red;">TINA</span></h4>
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<h2 style="color:blue;">About</h2>
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@@ -2,13 +2,178 @@
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# Resource object code
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#
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# Created by: The Resource Compiler for PyQt5 (Qt v5.15.3)
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# Created by: The Resource Compiler for PyQt5 (Qt v5.9.7)
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#
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# WARNING! All changes made in this file will be lost!
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from PyQt5 import QtCore
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qt_resource_data = b"\
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@@ -358,143 +523,18 @@ qt_resource_data = b"\
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|
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|
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|
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|
||||
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|
||||
@@ -511,19 +551,6 @@ qt_resource_data = b"\
|
||||
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|
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|
||||
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|
||||
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|
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|
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|
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@@ -532,97 +559,71 @@ qt_resource_data = b"\
|
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|
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|
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|
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|
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|
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|
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|
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|
||||
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|
||||
"
|
||||
|
||||
qt_resource_name = b"\
|
||||
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|
||||
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|
||||
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|
||||
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
||||
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
||||
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|
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
"
|
||||
|
||||
qt_resource_struct_v1 = b"\
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
"
|
||||
|
||||
qt_resource_struct_v2 = b"\
|
||||
\x00\x00\x00\x00\x00\x02\x00\x00\x00\x07\x00\x00\x00\x01\
|
||||
\x00\x00\x00\x00\x00\x00\x00\x00\
|
||||
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|
||||
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|
||||
\x00\x00\x01\x90\x07\xcd\xf3\x00\
|
||||
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|
||||
\x00\x00\x00\x64\x00\x00\x00\x00\x00\x01\x00\x00\x1f\x99\
|
||||
\x00\x00\x01\x90\x02\x81\x81\x00\
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
\x00\x00\x01\x90\x02\x81\x81\x00\
|
||||
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|
||||
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|
||||
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|
||||
\x00\x00\x01\x91\x2b\xf9\x38\xf6\
|
||||
"
|
||||
|
||||
qt_version = [int(v) for v in QtCore.qVersion().split('.')]
|
||||
if qt_version < [5, 8, 0]:
|
||||
qt_version = QtCore.qVersion().split('.')
|
||||
if qt_version < ['5', '8', '0']:
|
||||
rcc_version = 1
|
||||
qt_resource_struct = qt_resource_struct_v1
|
||||
else:
|
||||
|
||||
@@ -2,13 +2,178 @@
|
||||
|
||||
# Resource object code
|
||||
#
|
||||
# Created by: The Resource Compiler for PyQt5 (Qt v5.15.3)
|
||||
# Created by: The Resource Compiler for PyQt5 (Qt v5.9.7)
|
||||
#
|
||||
# WARNING! All changes made in this file will be lost!
|
||||
|
||||
from PyQt5 import QtCore
|
||||
|
||||
qt_resource_data = b"\
|
||||
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|
||||
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|
||||
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@@ -358,143 +523,18 @@ qt_resource_data = b"\
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@@ -511,19 +551,6 @@ qt_resource_data = b"\
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@@ -532,97 +559,71 @@ qt_resource_data = b"\
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|
||||
\x3e\x65\x74\x63\x2e\x2e\x2e\x3c\x2f\x62\x3e\x20\x65\x74\x63\x2e\
|
||||
\x2e\x2e\x3c\x2f\x70\x3e\x0a\x3c\x2f\x62\x6f\x64\x79\x3e\x3c\x2f\
|
||||
\x68\x74\x6d\x6c\x3e\x0a\
|
||||
"
|
||||
|
||||
qt_resource_name = b"\
|
||||
\x00\x08\
|
||||
\x00\x44\x5a\x07\
|
||||
\x00\x54\
|
||||
\x00\x69\x00\x6e\x00\x61\x00\x2e\x00\x6a\x00\x70\x00\x67\
|
||||
\x00\x0a\
|
||||
\x0c\xba\xf2\x7c\
|
||||
\x00\x69\
|
||||
\x00\x6e\x00\x64\x00\x65\x00\x78\x00\x2e\x00\x68\x00\x74\x00\x6d\x00\x6c\
|
||||
\x00\x0a\
|
||||
\x08\x8a\x34\x9c\
|
||||
\x08\x5a\x34\x9c\
|
||||
\x00\x70\
|
||||
\x00\x61\x00\x67\x00\x65\x00\x35\x00\x2e\x00\x68\x00\x74\x00\x6d\x00\x6c\
|
||||
\x00\x0a\
|
||||
\x08\x4a\x34\x9c\
|
||||
\x00\x70\
|
||||
\x00\x61\x00\x67\x00\x65\x00\x31\x00\x2e\x00\x68\x00\x74\x00\x6d\x00\x6c\
|
||||
\x00\x0a\
|
||||
\x08\x7a\x34\x9c\
|
||||
\x00\x70\
|
||||
\x00\x61\x00\x67\x00\x65\x00\x34\x00\x2e\x00\x68\x00\x74\x00\x6d\x00\x6c\
|
||||
\x00\x61\x00\x67\x00\x65\x00\x32\x00\x2e\x00\x68\x00\x74\x00\x6d\x00\x6c\
|
||||
\x00\x0a\
|
||||
\x08\x6a\x34\x9c\
|
||||
\x00\x70\
|
||||
\x00\x61\x00\x67\x00\x65\x00\x33\x00\x2e\x00\x68\x00\x74\x00\x6d\x00\x6c\
|
||||
\x00\x0a\
|
||||
\x08\x5a\x34\x9c\
|
||||
\x0c\xba\xf2\x7c\
|
||||
\x00\x69\
|
||||
\x00\x6e\x00\x64\x00\x65\x00\x78\x00\x2e\x00\x68\x00\x74\x00\x6d\x00\x6c\
|
||||
\x00\x08\
|
||||
\x00\x44\x5a\x07\
|
||||
\x00\x54\
|
||||
\x00\x69\x00\x6e\x00\x61\x00\x2e\x00\x6a\x00\x70\x00\x67\
|
||||
\x00\x0a\
|
||||
\x08\x4a\x34\x9c\
|
||||
\x00\x70\
|
||||
\x00\x61\x00\x67\x00\x65\x00\x32\x00\x2e\x00\x68\x00\x74\x00\x6d\x00\x6c\
|
||||
\x00\x61\x00\x67\x00\x65\x00\x31\x00\x2e\x00\x68\x00\x74\x00\x6d\x00\x6c\
|
||||
\x00\x0a\
|
||||
\x08\x8a\x34\x9c\
|
||||
\x00\x70\
|
||||
\x00\x61\x00\x67\x00\x65\x00\x35\x00\x2e\x00\x68\x00\x74\x00\x6d\x00\x6c\
|
||||
\x00\x0a\
|
||||
\x08\x7a\x34\x9c\
|
||||
\x00\x70\
|
||||
\x00\x61\x00\x67\x00\x65\x00\x34\x00\x2e\x00\x68\x00\x74\x00\x6d\x00\x6c\
|
||||
"
|
||||
|
||||
qt_resource_struct_v1 = b"\
|
||||
\x00\x00\x00\x00\x00\x02\x00\x00\x00\x07\x00\x00\x00\x01\
|
||||
\x00\x00\x00\x4e\x00\x00\x00\x00\x00\x01\x00\x00\x09\xe8\
|
||||
\x00\x00\x00\x64\x00\x00\x00\x00\x00\x01\x00\x00\x1f\x99\
|
||||
\x00\x00\x00\x00\x00\x00\x00\x00\x00\x01\x00\x00\x00\x00\
|
||||
\x00\x00\x00\x4a\x00\x00\x00\x00\x00\x01\x00\x00\x1e\xb0\
|
||||
\x00\x00\x00\x98\x00\x00\x00\x00\x00\x01\x00\x00\x20\xb1\
|
||||
\x00\x00\x00\x7e\x00\x00\x00\x00\x00\x01\x00\x00\x20\x06\
|
||||
\x00\x00\x00\x64\x00\x00\x00\x00\x00\x01\x00\x00\x1f\x5b\
|
||||
\x00\x00\x00\x30\x00\x00\x00\x00\x00\x01\x00\x00\x1e\x2c\
|
||||
\x00\x00\x00\x16\x00\x00\x00\x00\x00\x01\x00\x00\x15\xb1\
|
||||
\x00\x00\x00\x1a\x00\x00\x00\x00\x00\x01\x00\x00\x00\xab\
|
||||
\x00\x00\x00\x98\x00\x00\x00\x00\x00\x01\x00\x00\x20\xc8\
|
||||
\x00\x00\x00\x7e\x00\x00\x00\x00\x00\x01\x00\x00\x20\x44\
|
||||
\x00\x00\x00\x34\x00\x00\x00\x00\x00\x01\x00\x00\x01\x56\
|
||||
"
|
||||
|
||||
qt_resource_struct_v2 = b"\
|
||||
\x00\x00\x00\x00\x00\x02\x00\x00\x00\x07\x00\x00\x00\x01\
|
||||
\x00\x00\x00\x00\x00\x00\x00\x00\
|
||||
\x00\x00\x00\x00\x00\x00\x00\x00\x00\x01\x00\x00\x00\x00\
|
||||
\x00\x00\x00\x4e\x00\x00\x00\x00\x00\x01\x00\x00\x09\xe8\
|
||||
\x00\x00\x01\x90\x07\xcd\xf3\x00\
|
||||
\x00\x00\x00\x4a\x00\x00\x00\x00\x00\x01\x00\x00\x1e\xb0\
|
||||
\x00\x00\x00\x64\x00\x00\x00\x00\x00\x01\x00\x00\x1f\x99\
|
||||
\x00\x00\x01\x90\x02\x81\x81\x00\
|
||||
\x00\x00\x00\x98\x00\x00\x00\x00\x00\x01\x00\x00\x20\xb1\
|
||||
\x00\x00\x00\x00\x00\x00\x00\x00\x00\x01\x00\x00\x00\x00\
|
||||
\x00\x00\x01\x90\x02\x81\x81\x00\
|
||||
\x00\x00\x00\x7e\x00\x00\x00\x00\x00\x01\x00\x00\x20\x06\
|
||||
\x00\x00\x00\x1a\x00\x00\x00\x00\x00\x01\x00\x00\x00\xab\
|
||||
\x00\x00\x01\x90\x02\x81\x81\x00\
|
||||
\x00\x00\x00\x64\x00\x00\x00\x00\x00\x01\x00\x00\x1f\x5b\
|
||||
\x00\x00\x00\x98\x00\x00\x00\x00\x00\x01\x00\x00\x20\xc8\
|
||||
\x00\x00\x01\x90\x02\x81\x81\x00\
|
||||
\x00\x00\x00\x30\x00\x00\x00\x00\x00\x01\x00\x00\x1e\x2c\
|
||||
\x00\x00\x00\x7e\x00\x00\x00\x00\x00\x01\x00\x00\x20\x44\
|
||||
\x00\x00\x01\x90\x02\x81\x81\x00\
|
||||
\x00\x00\x00\x16\x00\x00\x00\x00\x00\x01\x00\x00\x15\xb1\
|
||||
\x00\x00\x01\x90\x07\x0e\x44\xb0\
|
||||
\x00\x00\x00\x34\x00\x00\x00\x00\x00\x01\x00\x00\x01\x56\
|
||||
\x00\x00\x01\x91\x2b\xf9\x38\xf6\
|
||||
"
|
||||
|
||||
qt_version = [int(v) for v in QtCore.qVersion().split('.')]
|
||||
if qt_version < [5, 8, 0]:
|
||||
qt_version = QtCore.qVersion().split('.')
|
||||
if qt_version < ['5', '8', '0']:
|
||||
rcc_version = 1
|
||||
qt_resource_struct = qt_resource_struct_v1
|
||||
else:
|
||||
|
||||
281
readdatafile.py
Normal file
281
readdatafile.py
Normal file
@@ -0,0 +1,281 @@
|
||||
import h5py as hdf
|
||||
import numpy as np
|
||||
from scipy import signal
|
||||
from scipy.signal import hilbert
|
||||
import sys
|
||||
|
||||
|
||||
import matplotlib
|
||||
import matplotlib.pyplot as plt
|
||||
file = open('/hipa/bd/data/measurements/tina/20240710-223007_2000.txt','r')
|
||||
#file = open('/hipa/bd/data/measurements/tina/20240710-223158_1175.txt','r')
|
||||
#file = open('/hipa/bd/data/measurements/tina/20240807-182215.txt','r')
|
||||
#file = open('/hipa/bd/data/measurements/tina/test.txt','r')
|
||||
content = file.readlines()
|
||||
#print(content)
|
||||
file.close()
|
||||
|
||||
|
||||
t = []
|
||||
y1 = []
|
||||
y2 = []
|
||||
idx = []
|
||||
t_stepsize = 0.0000000004*50
|
||||
t_stepsize = 0.00000002
|
||||
t_offset = 2500002/2
|
||||
t_inc = 0
|
||||
|
||||
'''
|
||||
for count, entry in enumerate(content[5:]):
|
||||
t_inc += t_stepsize
|
||||
val=entry.split('\t')
|
||||
#print(val)
|
||||
#print(val[0])
|
||||
#print(val[1])
|
||||
y1.append(float(val[0]))
|
||||
y2.append(float(val[1]))
|
||||
idx.append(t_inc) #count
|
||||
if count < 10:
|
||||
print(val[0], val[1], count, t_inc )
|
||||
'''
|
||||
for count, entry in enumerate(content[5:]):
|
||||
entry=entry.replace('\n','')
|
||||
val=entry.split('\t')
|
||||
t_inc += t_stepsize
|
||||
t.append(val[0])
|
||||
#if (abs(float(val[1])) > 0.0022):
|
||||
# val[1] = val[1]
|
||||
#else:
|
||||
# val[1]=0
|
||||
#if (abs(float(val[2])) > 0.015):
|
||||
# val[2] = val[2]
|
||||
#else:
|
||||
# val[2]=0
|
||||
|
||||
y1.append(float(val[1])*(-1))
|
||||
y2.append(float(val[2]))
|
||||
idx.append(t_inc) #count
|
||||
#if count < 200:
|
||||
# break
|
||||
# print(val[1], val[2], count, t_inc )
|
||||
#if count > 300:
|
||||
# sys.exit(0)
|
||||
|
||||
start=12
|
||||
stop=2500002
|
||||
_y1 = []
|
||||
_y2 = []
|
||||
count = 0
|
||||
t_inc = 0
|
||||
idx = []
|
||||
for val in range(start,stop,50):
|
||||
_test1_array = y1[val : val+50]
|
||||
_test2_array = y2[val : val+50]
|
||||
_y1.append(np.array(_test1_array).max())
|
||||
_y2.append(np.array(_test2_array).max())
|
||||
count += 1
|
||||
t_inc += t_stepsize
|
||||
idx.append(t_inc)
|
||||
|
||||
y1 = _y1
|
||||
y2 = _y2
|
||||
print(y1[0:50], y2[0:50] )
|
||||
|
||||
'''
|
||||
y1 = [ 1, 2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3, 1, 2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3, 1, 2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3,
|
||||
1, 2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3, 1, 2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3, 1, 2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3,
|
||||
1, 2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3, 1, 2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3, 1, 2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3
|
||||
]
|
||||
y2 = [ 2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3, 1, 2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3, 1, 2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3, 1,
|
||||
1, 2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3, 1, 2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3, 1, 2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3,
|
||||
2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3, 1, 2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3, 1, 2, 2, 1, 4, 5, 6, 2, 1, 1, 1, 3, 1
|
||||
]
|
||||
y2= [ i*5 for i in y2]
|
||||
'''
|
||||
'''
|
||||
f1 = hdf.File('/hipa/bd/data/measurements/Tina_2024-08-07_10:41:04.h5','a')
|
||||
grp = f1.require_group('Raw_data')
|
||||
if 't' in grp:
|
||||
del grp['t']
|
||||
if 'y1' in grp:
|
||||
del grp['y1']
|
||||
if 't_idx' in grp:
|
||||
del grp['t_idx']
|
||||
if 'y2' in grp:
|
||||
del grp['y2']
|
||||
dset_y1 = grp.create_dataset('y1', data=y1)
|
||||
dset_y2 = grp.create_dataset('y2', data=y2)
|
||||
dset_t = grp.create_dataset("t", data=t)
|
||||
dset_t_idx = grp.create_dataset("t_idx", data=idx)
|
||||
print(dset_y1.name)
|
||||
f1.close()
|
||||
'''
|
||||
|
||||
|
||||
idx = np.array(idx) - t_offset*t_stepsize
|
||||
|
||||
analytic_signal_1 = y1 #hilbert(y1)
|
||||
amplitude_envelope_1 = np.abs(analytic_signal_1) #analytic_signal_1 #
|
||||
analytic_signal_2 = y2 #hilbert(y2)
|
||||
amplitude_envelope_2 = np.abs(analytic_signal_2) #analytic_signal_2 #
|
||||
|
||||
#amplitude_envelope_1, peaks1 = signal.find_peaks(y1, height=0.012)
|
||||
#amplitude_envelope_2, peaks2 = signal.find_peaks(y2, height=0.015)
|
||||
|
||||
|
||||
mean_amplitude_envelope_1 = np.mean(amplitude_envelope_1, keepdims=True)
|
||||
mean_amplitude_envelope_2 = np.mean(amplitude_envelope_2, keepdims=True)
|
||||
|
||||
mean_amplitude_envelope_1 = np.mean(analytic_signal_1, keepdims=True)
|
||||
mean_amplitude_envelope_2 = np.mean(analytic_signal_2, keepdims=True)
|
||||
|
||||
print(mean_amplitude_envelope_1, mean_amplitude_envelope_2)
|
||||
|
||||
normalized_amplitude_envelope_1 = (analytic_signal_1 - mean_amplitude_envelope_1) #/ (np.std(amplitude_envelope_1)) # * len(amplitude_envelope_1))
|
||||
normalized_amplitude_envelope_2 = (analytic_signal_2 - mean_amplitude_envelope_2) #/ (np.std(amplitude_envelope_2))
|
||||
|
||||
#normalized_amplitude_envelope_1 = (amplitude_envelope_1 - mean_amplitude_envelope_1) #/ (np.std(amplitude_envelope_1)) # * len(amplitude_envelope_1))
|
||||
#normalized_amplitude_envelope_2 = (amplitude_envelope_2 - mean_amplitude_envelope_2) #/ (np.std(amplitude_envelope_2))
|
||||
#rms_amplitude_envelope_1 = np.sqrt(np.mean(normalized_amplitude_envelope_1**2))
|
||||
#rms_amplitude_envelope_2 = np.sqrt(np.mean(normalized_amplitude_envelope_2**2))
|
||||
#print(rms_amplitude_envelope_1, rms_amplitude_envelope_2)
|
||||
|
||||
|
||||
#norm_1 = np.linalg.norm(amplitude_envelope_1)
|
||||
#normalized_amplitude_envelope_1 = amplitude_envelope_1/norm_1
|
||||
#norm_2 = np.linalg.norm(amplitude_envelope_2)
|
||||
#normalized_amplitude_envelope_2 = amplitude_envelope_2/norm_2
|
||||
|
||||
print (normalized_amplitude_envelope_1[0:10])
|
||||
print (amplitude_envelope_1[0:10])
|
||||
|
||||
'''
|
||||
y2_peaks = signal.find_peaks(normalized_amplitude_envelope_2, height=0.005)
|
||||
y1_peaks = signal.find_peaks(normalized_amplitude_envelope_1, height=0.002)
|
||||
|
||||
|
||||
|
||||
print(y2_peaks)
|
||||
print(y1_peaks)
|
||||
print(y1_peaks[0])
|
||||
print(y1_peaks[1]['peak_heights'])
|
||||
print("length y1 peaks", len(y1_peaks[0]))
|
||||
print(y2_peaks[0])
|
||||
print(y2_peaks[1]['peak_heights'])
|
||||
print("length y2 peaks", len(y2_peaks[0]))
|
||||
#sys.exit(1)
|
||||
normalized_amplitude_envelope_1_p = y1_peaks[1]['peak_heights']
|
||||
normalized_amplitude_envelope_2_p = y2_peaks[1]['peak_heights']
|
||||
#normalized_amplitude_envelope_1_p = y1
|
||||
#normalized_amplitude_envelope_2_p = y2
|
||||
#sys.exit(0)
|
||||
'''
|
||||
|
||||
y1_array = []
|
||||
y2_array = []
|
||||
|
||||
'''
|
||||
for i, val in enumerate(y1):
|
||||
if (i in y1_peaks[0]):
|
||||
_idx = np.where(y1_peaks[0] == i)[0][0]
|
||||
y1_array.append(y1_peaks[1]['peak_heights'][_idx])
|
||||
else:
|
||||
y1_array.append(0)
|
||||
|
||||
for i, val in enumerate(y2):
|
||||
if i in y2_peaks[0]:
|
||||
_idx = np.where(y2_peaks[0] == i)[0][0]
|
||||
y2_array.append(y2_peaks[1]['peak_heights'][_idx])
|
||||
else:
|
||||
y2_array.append(0)
|
||||
'''
|
||||
#print(len(y1_array))
|
||||
#print(len(y2_array))
|
||||
|
||||
#sys.exit(0)
|
||||
#normalized_amplitude_envelope_1_p = y1_array
|
||||
#normalized_amplitude_envelope_2_p = y2_array
|
||||
|
||||
idx2 = []
|
||||
idx_neg = []
|
||||
#for val in reversed(idx[1:]):
|
||||
# idx_neg.append(val * (-1))
|
||||
#idx2 = idx + idx_neg
|
||||
mid_time = idx[-1]/2
|
||||
|
||||
for val in idx:
|
||||
idx_neg.append(val-mid_time)
|
||||
|
||||
#print(normalized_amplitude_envelope_1_p)
|
||||
#print(normalized_amplitude_envelope_2_p)
|
||||
#normalized_amplitude_envelope_1_p = y1
|
||||
#normalized_amplitude_envelope_2_p = y2
|
||||
|
||||
corr = signal.correlate(normalized_amplitude_envelope_2, normalized_amplitude_envelope_1, mode='same', method='auto')/len(amplitude_envelope_1)
|
||||
corr_full = signal.correlate(normalized_amplitude_envelope_2, normalized_amplitude_envelope_1, mode='full', method='auto') #/len(amplitude_envelope_1)
|
||||
#corr_valid = signal.correlate(normalized_amplitude_envelope_1, normalized_amplitude_envelope_2, mode='valid', method='auto')
|
||||
lags = signal.correlation_lags(len(normalized_amplitude_envelope_2), len(normalized_amplitude_envelope_1), mode='same')
|
||||
lags_full = signal.correlation_lags(len(normalized_amplitude_envelope_2), len(normalized_amplitude_envelope_1), mode='full')
|
||||
|
||||
lags_full = lags_full #* t_stepsize
|
||||
lags = lags #* t_stepsize
|
||||
|
||||
#lags_valid = signal.correlation_lags(len(normalized_amplitude_envelope_2), len(normalized_amplitude_envelope_1), mode='valid')
|
||||
lag_full = lags_full[np.argmax(corr_full)]
|
||||
lag = lags[np.argmax(corr)]
|
||||
#lag_valid = lags_valid[np.argmax(corr_valid)]
|
||||
#corr = corr/rms_amplitude_envelope_1/rms_amplitude_envelope_2
|
||||
print("lag same/full", lag, lag_full)
|
||||
print("lag same/full", lag * t_stepsize, lag_full * t_stepsize)
|
||||
print("length lags", len(lags))
|
||||
|
||||
print("VALID", signal.correlate(normalized_amplitude_envelope_1, normalized_amplitude_envelope_2, mode='valid'))
|
||||
|
||||
#lags = signal.correlation_lags(len(amplitude_envelope_2), len(amplitude_envelope_1))
|
||||
#corr4 = signal.correlate(analytic_signal_1, analytic_signal_2, mode='full')
|
||||
print(len(y2))
|
||||
print(len(amplitude_envelope_2))
|
||||
print("max correlation", np.max(corr))
|
||||
print("arg of max corrrelation", np.argmax(corr))
|
||||
print("time index", idx[np.argmax(corr)])
|
||||
#print(y1)
|
||||
|
||||
#y1 = [0.000231, -0.000273, 0.000206, 0.000408,
|
||||
#0.000609, 0.000231, 0.000508, 0.000760,
|
||||
#0.000433, 0.000206, 0.000231, 0.000130]
|
||||
|
||||
subplots = 4
|
||||
ln=100
|
||||
ln2=1239770
|
||||
ln3=1260230
|
||||
|
||||
|
||||
if subplots == 4:
|
||||
fig, (ax) = plt.subplots(nrows=2, ncols=2, figsize=(18,9))
|
||||
|
||||
#ax1.yticks(np.arange(min(y1), max(y1), 1))
|
||||
ax[0,0].ticklabel_format(useOffset=False, style='plain')
|
||||
#ax[0,0].plot(idx[0:ln], amplitude_envelope_1[0:ln], 'b')
|
||||
#y1
|
||||
ax[0,0].plot(idx[0:ln], normalized_amplitude_envelope_1[0:ln], 'ro')
|
||||
#ax1.set_ylim([-0.05, 0.05])
|
||||
#y2
|
||||
ax[1,0].plot(idx[0:ln], normalized_amplitude_envelope_2[0:ln], 'ro')
|
||||
#ax[1,0].plot(idx[0:ln], amplitude_envelope_2[0:ln], 'g')
|
||||
#else:
|
||||
# fig, (ax3, ax4) = plt.subplots(2, figsize=(20,12))
|
||||
|
||||
|
||||
|
||||
ax[0,1].plot(lags[:], corr[:])
|
||||
#ax3.plot(corr)
|
||||
ax[1,1].plot(lags_full[:], corr_full[:], 'yo')
|
||||
#start, end = ax1.get_ylim()
|
||||
#start2, end2 = ax2.get_ylim()
|
||||
#print(start, end)
|
||||
#print(start2, end2)
|
||||
#ax1.yaxis.set_ticks(np.arange(start, end, 10))
|
||||
#ax2.yaxis.set_ticks(np.arange(start2, end2, 10))
|
||||
|
||||
|
||||
plt.show()
|
||||
@@ -15,7 +15,7 @@ from scipy import signal
|
||||
from scipy.signal import chirp, hilbert
|
||||
from qtpy.QtCore import QObject, Signal, Slot
|
||||
|
||||
from apps4ops.bdbase.utils import _line
|
||||
from apps4ops.bdbase import h5_storage, utils
|
||||
from apps4ops.bdbase.enumkind import MsgSeverity
|
||||
|
||||
matplotlib.use('Agg')
|
||||
@@ -138,7 +138,7 @@ class AnalysisProcedure(QObject):
|
||||
if input_data is None:
|
||||
mess = "No input parameters given; no measurement performed"
|
||||
self.parent.trigger_log_message.emit(
|
||||
MsgSeverity.INFO.name, _pymodule, _line(), mess, {})
|
||||
MsgSeverity.INFO.name, _pymodule, utils.line_no(), mess, {})
|
||||
return None
|
||||
|
||||
|
||||
@@ -171,6 +171,14 @@ class AnalysisProcedure(QObject):
|
||||
self.parent.trigger_progressbar.emit(PROGRESS_BAR_THREAD_END)
|
||||
return all_data
|
||||
|
||||
def load_hdf_file(self, hdf_filename_loaded):
|
||||
|
||||
print("raw_data==>", flush=True)
|
||||
|
||||
raw_data = h5_storage.loadH5Recursive(hdf_filename_loaded)
|
||||
|
||||
self.raw_data = raw_data
|
||||
return self.raw_data
|
||||
|
||||
def reanalyze(self, all_data):
|
||||
|
||||
@@ -203,7 +211,7 @@ class AnalysisProcedure(QObject):
|
||||
self.cafe.getStatusCodeAsString(status))
|
||||
options['statusInfo'] = self.cafe.getStatusInfo(status)
|
||||
self.parent.trigger_log_message.emit(
|
||||
MsgSeverity.ERROR.name, _pymodule, _line(),
|
||||
MsgSeverity.ERROR.name, _pymodule, utils.line_no(),
|
||||
("Cannot attach CA context in thread " +
|
||||
"Scan will not be initiated!"), _options)
|
||||
|
||||
@@ -231,7 +239,7 @@ class AnalysisProcedure(QObject):
|
||||
self.parent.trigger_progressbar.emit(i)
|
||||
time.sleep(0.1)
|
||||
if self.abort:
|
||||
self.aborting(_line())
|
||||
self.aborting(utils.line_no())
|
||||
return None
|
||||
|
||||
#Fill Raw data here
|
||||
|
||||
2
tina.py
2
tina.py
@@ -222,7 +222,7 @@ class StartMain(BaseWindow):
|
||||
"""<b>{0}</b> v {1}
|
||||
<p>Copyright © Paul Scherrer Institut (PSI).
|
||||
All rights reserved.</p>
|
||||
<p>Authors: P.-A. Duperrex, W. Koprek, J. Chrin </p>
|
||||
<p>Authors: P.-A. Duperrex, W. Koprek, J. Chrin, A. Facchetti </p>
|
||||
<p>A python implementation of the LabVIEW measurement developed by P.-A. Duperrex <br>
|
||||
Ref: P.-A. Duperrex and A. Facchetti <br>
|
||||
Number of Turn Measurements on the HIPA Cyclotrons at PSI <br>
|
||||
|
||||
22
tina.sh
22
tina.sh
@@ -5,7 +5,7 @@ cd /hipa/bd/applications/tina/devl
|
||||
appNameDefault="tina.sh"
|
||||
|
||||
module unload gcc
|
||||
module load gcc/7.3.0
|
||||
module load gcc/7.5.0
|
||||
|
||||
if [ -z "$PS1" ] # no prompt?
|
||||
### if [ -v PS1 ] # On Bash 4.2+ ...
|
||||
@@ -17,9 +17,12 @@ else
|
||||
echo "Interactive/sourced script"
|
||||
fi
|
||||
|
||||
_EPICS_HOST_ARCH=${RHREL}-x86_64
|
||||
|
||||
|
||||
# Select Python Version here. Currently one of 3.5, 3.7, 3.8 and 3.10
|
||||
PYTHON_VERSION=3.10
|
||||
|
||||
PYTHON_PATH=.:/opt/gfa/cafe/python/pycafe/cafe-1.20.0-gcc-7.5.0/lib/${_EPICS_HOST_ARCH}:/hipa/bd/applications/deps/apps4ops/v1.11.0
|
||||
|
||||
if [ "$1" ]; then
|
||||
|
||||
@@ -27,13 +30,21 @@ if [ "$1" ]; then
|
||||
echo "Using default version $PYTHON_VERSION"
|
||||
elif [ "$1" == "3.7" -o "$1" == "37" ]; then
|
||||
PYTHON_VERSION=3.7
|
||||
PYTHON_PATH=.:/opt/gfa/cafe/python/pycafe/cafe-1.20.0-gcc-7.3.0/lib/${_EPICS_HOST_ARCH}:/hipa/bd/applications/deps/apps4ops/v1.11.0
|
||||
module unload gcc
|
||||
module load gcc/7.3.0
|
||||
|
||||
elif [ "$1" == "3.8" -o "$1" == "38" ]; then
|
||||
PYTHON_VERSION=3.8
|
||||
PYTHON_PATH=.:/opt/gfa/cafe/python/pycafe/cafe-1.19.3/lib/${_EPICS_HOST_ARCH}:/hipa/bd/applications/deps/apps4ops/v1.11.0
|
||||
module unload gcc
|
||||
module load gcc/7.5.0
|
||||
|
||||
elif [ "$1" == "3.10" -o "$1" == "310" ]; then
|
||||
PYTHON_VERSION=3.10
|
||||
|
||||
PYTHON_PATH=.:/opt/gfa/cafe/python/pycafe/cafe-1.20.0-gcc-7.5.0/lib/${_EPICS_HOST_ARCH}:/hipa/bd/applications/deps/apps4ops/v1.11.0
|
||||
module unload gcc
|
||||
module load gcc/7.5.0
|
||||
else
|
||||
echo "Requested Python version is not supported"
|
||||
echo "Using default version $PYTHON_VERSION"
|
||||
@@ -44,14 +55,13 @@ fi
|
||||
|
||||
echo "PYTHON_VERSION $PYTHON_VERSION"
|
||||
|
||||
_EPICS_HOST_ARCH=${RHREL}-x86_64
|
||||
|
||||
. /opt/gfa/python $PYTHON_VERSION
|
||||
|
||||
#C_EXT version for Py 3.5, 3.7. 3.8, 3.10:
|
||||
|
||||
export PYTHONPATH=.:/opt/gfa/cafe/python/pycafe/cafe-1.19.3/lib/${_EPICS_HOST_ARCH}:/hipa/bd/applications/deps/apps4ops/v1.11.0
|
||||
#export PYTHONPATH=.:/opt/gfa/cafe/python/pycafe/cafe-1.19.3/lib/${_EPICS_HOST_ARCH}:/hipa/bd/applications/deps/apps4ops/v1.11.0
|
||||
|
||||
export PYTHONPATH=$PYTHON_PATH
|
||||
echo $PYTHONPATH
|
||||
|
||||
STDOUT_DIR="/tmp"
|
||||
|
||||
Reference in New Issue
Block a user