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aaredb/testfunctions.ipynb
GotthardG db6164ac3f Add Dockerfiles and update package dependencies 
Introduced Dockerfiles for logistics and frontend applications to streamline development and deployment. Updated package dependencies in the frontend to newer versions for improved stability and compatibility.
2025-03-14 13:47:54 +01:00

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{
"cells": [
{
"metadata": {
"ExecuteTime": {
"end_time": "2025-03-14T12:34:36.688448Z",
"start_time": "2025-03-14T12:34:36.274011Z"
}
},
"cell_type": "code",
"source": [
"import json\n",
"\n",
"#from nbclient.client import timestamp\n",
"\n",
"import backend.aareDBclient as aareDBclient\n",
"from aareDBclient.rest import ApiException\n",
"from pprint import pprint\n",
"\n",
"#from app.data.data import sample\n",
"\n",
"#from aareDBclient import SamplesApi, ShipmentsApi, PucksApi\n",
"#from aareDBclient.models import SampleEventCreate, SetTellPosition\n",
"#from examples.examples import api_response\n",
"\n",
"print(aareDBclient.__version__)\n",
"\n",
"configuration = aareDBclient.Configuration(\n",
" #host = \"https://mx-aare-test.psi.ch:1492\"\n",
" host = \"https://127.0.0.1:8000\"\n",
")\n",
"\n",
"print(configuration.host)\n",
"\n",
"configuration.verify_ssl = False # Disable SSL verification\n",
"#print(dir(SamplesApi))"
],
"id": "3b7c27697a4d5c83",
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"0.1.0a25\n",
"https://127.0.0.1:8000\n"
]
}
],
"execution_count": 1
},
{
"metadata": {},
"cell_type": "code",
"outputs": [],
"execution_count": null,
"source": [
"## Fetch all Shipments, list corresponding dewars and pucks\n",
"\n",
"from datetime import date, datetime\n",
"from aareDBclient import ShipmentsApi, SamplesApi, GridScanParamers\n",
"from aareDBclient.models import Shipment\n",
"\n",
"with aareDBclient.ApiClient(configuration) as api_client:\n",
" api_instance = aareDBclient.ShipmentsApi(api_client)\n",
"\n",
" try:\n",
" # Fetch all shipments\n",
" all_shipments_response = api_instance.fetch_shipments_shipments_get()\n",
"\n",
" # Print shipment names and their associated puck names\n",
" for shipment in all_shipments_response:\n",
" print(f\"Shipment ID: {shipment.id}, Shipment Name: {shipment.shipment_name}\")\n",
" if hasattr(shipment, 'dewars') and shipment.dewars: # Ensure 'dewars' exists\n",
" for dewar in shipment.dewars:\n",
" print(f\" Dewar ID: {dewar.id}, Dewar Name: {dewar.dewar_name}, Dewar Unique ID: {dewar.unique_id} \")\n",
"\n",
" if hasattr(dewar, 'pucks') and dewar.pucks: # Ensure 'pucks' exists\n",
" for puck in dewar.pucks:\n",
" print(f\" Puck ID: {puck.id}, Puck Name: {puck.puck_name}\")\n",
" else:\n",
" print(\" No pucks found in this dewar.\")\n",
" else:\n",
" print(\" No dewars found in this shipment.\")\n",
"\n",
" except ApiException as e:\n",
" print(f\"Exception when calling ShipmentsApi->fetch_shipments_shipments_get: {e}\")\n"
],
"id": "4955b858f2cef93e"
},
{
"metadata": {
"ExecuteTime": {
"end_time": "2025-02-25T15:47:34.956061Z",
"start_time": "2025-02-25T15:47:34.941372Z"
}
},
"cell_type": "code",
"source": [
"from datetime import date\n",
"from aareDBclient import LogisticsApi\n",
"from aareDBclient.models import LogisticsEventCreate # Import required model\n",
"\n",
"with aareDBclient.ApiClient(configuration) as api_client:\n",
" api_instance = aareDBclient.LogisticsApi(api_client)\n",
"\n",
" try:\n",
" # Create payload using the required model\n",
" logistics_event_create = LogisticsEventCreate(\n",
" dewar_qr_code='923db239427869be',\n",
" location_qr_code='A2-X06SA',\n",
" transaction_type='incoming',\n",
" timestamp=date.today() # Adjust if the API expects datetime\n",
" )\n",
"\n",
" # Pass the payload to the API function\n",
" api_response = api_instance.scan_dewar_logistics_dewar_scan_post(\n",
" logistics_event_create=logistics_event_create # Pass as an object\n",
" )\n",
" print(\"API Response:\", api_response)\n",
"\n",
" except ApiException as e:\n",
" print(f\"Exception when calling LogisticsApi->scan_dewar_logistics_dewar_scan_post: {e}\")\n",
"\n",
" try:\n",
" # Create payload using the required model\n",
" logistics_event_create = LogisticsEventCreate(\n",
" dewar_qr_code='923db239427869be',\n",
" location_qr_code='A2-X06SA',\n",
" transaction_type='refill',\n",
" timestamp=date.today() # Adjust if the API expects datetime\n",
" )\n",
"\n",
" # Pass the payload to the API function\n",
" api_response = api_instance.scan_dewar_logistics_dewar_scan_post(\n",
" logistics_event_create=logistics_event_create # Pass as an object\n",
" )\n",
" print(\"API Response:\", api_response)\n",
"\n",
" except ApiException as e:\n",
" print(f\"Exception when calling LogisticsApi->scan_dewar_logistics_dewar_scan_post: {e}\")\n",
"\n",
" try:\n",
" # Create payload using the required model\n",
" logistics_event_create = LogisticsEventCreate(\n",
" dewar_qr_code='923db239427869be',\n",
" location_qr_code='X06DA-Beamline',\n",
" transaction_type='beamline',\n",
" timestamp=date.today() # Adjust if the API expects datetime\n",
" )\n",
"\n",
" # Pass the payload to the API function\n",
" api_response = api_instance.scan_dewar_logistics_dewar_scan_post(\n",
" logistics_event_create=logistics_event_create # Pass as an object\n",
" )\n",
" print(\"API Response:\", api_response)\n",
"\n",
" except ApiException as e:\n",
" print(f\"Exception when calling LogisticsApi->scan_dewar_logistics_dewar_scan_post: {e}\")\n"
],
"id": "8fd3638bffaecd23",
"outputs": [
{
"ename": "TypeError",
"evalue": "ApiClient.call_api() got an unexpected keyword argument 'path_params'",
"output_type": "error",
"traceback": [
"\u001B[0;31m---------------------------------------------------------------------------\u001B[0m",
"\u001B[0;31mTypeError\u001B[0m Traceback (most recent call last)",
"Cell \u001B[0;32mIn[43], line 19\u001B[0m\n\u001B[1;32m 15\u001B[0m \u001B[38;5;28;01mtry\u001B[39;00m:\n\u001B[1;32m 16\u001B[0m \u001B[38;5;28;01mwith\u001B[39;00m \u001B[38;5;28mopen\u001B[39m(file_path, \u001B[38;5;124m\"\u001B[39m\u001B[38;5;124mrb\u001B[39m\u001B[38;5;124m\"\u001B[39m) \u001B[38;5;28;01mas\u001B[39;00m file_data:\n\u001B[1;32m 17\u001B[0m \u001B[38;5;66;03m# Use the low-level call_api method; note that the files parameter here is\u001B[39;00m\n\u001B[1;32m 18\u001B[0m \u001B[38;5;66;03m# a dictionary with key matching the FastAPI parameter name.\u001B[39;00m\n\u001B[0;32m---> 19\u001B[0m response \u001B[38;5;241m=\u001B[39m \u001B[43mapi_client\u001B[49m\u001B[38;5;241;43m.\u001B[39;49m\u001B[43mcall_api\u001B[49m\u001B[43m(\u001B[49m\n\u001B[1;32m 20\u001B[0m \u001B[43m \u001B[49m\u001B[38;5;124;43mf\u001B[39;49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[38;5;124;43m/\u001B[39;49m\u001B[38;5;132;43;01m{\u001B[39;49;00m\u001B[43msample_id\u001B[49m\u001B[38;5;132;43;01m}\u001B[39;49;00m\u001B[38;5;124;43m/upload_images\u001B[39;49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[43m,\u001B[49m\n\u001B[1;32m 21\u001B[0m \u001B[43m \u001B[49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[38;5;124;43mPOST\u001B[39;49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[43m,\u001B[49m\n\u001B[1;32m 22\u001B[0m \u001B[43m \u001B[49m\u001B[43mpath_params\u001B[49m\u001B[38;5;241;43m=\u001B[39;49m\u001B[43m{\u001B[49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[38;5;124;43msample_id\u001B[39;49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[43m:\u001B[49m\u001B[43m \u001B[49m\u001B[43msample_id\u001B[49m\u001B[43m}\u001B[49m\u001B[43m,\u001B[49m\n\u001B[1;32m 23\u001B[0m \u001B[43m \u001B[49m\u001B[43mfiles\u001B[49m\u001B[38;5;241;43m=\u001B[39;49m\u001B[43m{\u001B[49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[38;5;124;43muploaded_file\u001B[39;49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[43m:\u001B[49m\u001B[43m \u001B[49m\u001B[43m(\u001B[49m\u001B[43mfilename\u001B[49m\u001B[43m,\u001B[49m\u001B[43m \u001B[49m\u001B[43mfile_data\u001B[49m\u001B[43m,\u001B[49m\u001B[43m \u001B[49m\u001B[43mmime_type\u001B[49m\u001B[43m)\u001B[49m\u001B[43m}\u001B[49m\n\u001B[1;32m 24\u001B[0m \u001B[43m \u001B[49m\u001B[43m)\u001B[49m\n\u001B[1;32m 25\u001B[0m \u001B[38;5;28mprint\u001B[39m(\u001B[38;5;124m\"\u001B[39m\u001B[38;5;124mAPI Response:\u001B[39m\u001B[38;5;124m\"\u001B[39m)\n\u001B[1;32m 26\u001B[0m \u001B[38;5;28mprint\u001B[39m(response)\n",
"\u001B[0;31mTypeError\u001B[0m: ApiClient.call_api() got an unexpected keyword argument 'path_params'"
]
}
],
"execution_count": 43
},
{
"metadata": {
"ExecuteTime": {
"end_time": "2025-03-03T10:06:33.111482Z",
"start_time": "2025-03-03T10:06:33.082367Z"
}
},
"cell_type": "code",
"source": [
"# Get a list of pucks that are \"at the beamline\"\n",
"\n",
"with aareDBclient.ApiClient(configuration) as api_client:\n",
" # Create an instance of the API class\n",
" api_instance = aareDBclient.PucksApi(api_client)\n",
" get_pucks_at_beamline = aareDBclient.PucksApi(api_client)\n",
"\n",
" try:\n",
" # Create Return Address\n",
" api_response = api_instance.get_pucks_by_slot_pucks_slot_slot_identifier_get(slot_identifier='X06DA')\n",
" print(\"The response of PucksApi->get_pucks_by_slot_pucks_slot_slot_identifier_get:\\n\")\n",
" pprint(api_response)\n",
"\n",
" except ApiException as e:\n",
" print(\"Exception when calling PucksApi->get_pucks_by_slot_pucks_slot_slot_identifier_get: %s\\n\" % e)"
],
"id": "9cf3457093751b61",
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"The response of PucksApi->get_pucks_by_slot_pucks_slot_slot_identifier_get:\n",
"\n",
"[PuckWithTellPosition(id=1, puck_name='PUCK-001', puck_type='Unipuck', puck_location_in_dewar=1, dewar_id=1, dewar_name='Dewar One', pgroup='p20001', samples=None, tell_position='A2'),\n",
" PuckWithTellPosition(id=2, puck_name='PUCK002', puck_type='Unipuck', puck_location_in_dewar=2, dewar_id=1, dewar_name='Dewar One', pgroup='p20001', samples=None, tell_position='A1'),\n",
" PuckWithTellPosition(id=3, puck_name='PUCK003', puck_type='Unipuck', puck_location_in_dewar=3, dewar_id=1, dewar_name='Dewar One', pgroup='p20001', samples=None, tell_position='F2'),\n",
" PuckWithTellPosition(id=4, puck_name='PUCK004', puck_type='Unipuck', puck_location_in_dewar=4, dewar_id=1, dewar_name='Dewar One', pgroup='p20001', samples=None, tell_position=None),\n",
" PuckWithTellPosition(id=5, puck_name='PUCK005', puck_type='Unipuck', puck_location_in_dewar=5, dewar_id=1, dewar_name='Dewar One', pgroup='p20001', samples=None, tell_position=None),\n",
" PuckWithTellPosition(id=6, puck_name='PUCK006', puck_type='Unipuck', puck_location_in_dewar=6, dewar_id=1, dewar_name='Dewar One', pgroup='p20001', samples=None, tell_position='F1'),\n",
" PuckWithTellPosition(id=7, puck_name='PUCK007', puck_type='Unipuck', puck_location_in_dewar=7, dewar_id=1, dewar_name='Dewar One', pgroup='p20001', samples=None, tell_position=None)]\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n",
" warnings.warn(\n"
]
}
],
"execution_count": 2
},
{
"metadata": {
"ExecuteTime": {
"end_time": "2025-02-26T12:04:33.644201Z",
"start_time": "2025-02-26T12:04:33.625894Z"
}
},
"cell_type": "code",
"source": [
"from aareDBclient import SetTellPosition, SetTellPositionRequest\n",
"\n",
"with aareDBclient.ApiClient(configuration) as api_client:\n",
" # Create an instance of the API class\n",
" api_instance = aareDBclient.PucksApi(api_client)\n",
"\n",
" # Payload with SetTellPosition objects\n",
" payload = SetTellPositionRequest(\n",
" tell=\"X06DA\",\n",
" #pucks=[\n",
" # SetTellPosition(puck_name='PSIMX074', segment='B', puck_in_segment=1),\n",
" # SetTellPosition(puck_name='PSIMX080', segment='B', puck_in_segment=2),\n",
" # SetTellPosition(puck_name='PSIMX081', segment='C', puck_in_segment=3),\n",
" # SetTellPosition(puck_name='PSIMX084', segment='C', puck_in_segment=4),\n",
" # SetTellPosition(puck_name='PSIMX104', segment='E', puck_in_segment=5),\n",
" # SetTellPosition(puck_name='PSIMX107', segment='E', puck_in_segment=1),\n",
" # SetTellPosition(puck_name='PSIMX117', segment='F', puck_in_segment=2),\n",
" #]\n",
" #pucks=[\n",
" # SetTellPosition(puck_name='PSIMX074', segment='F', puck_in_segment=1),\n",
" # SetTellPosition(puck_name='PSIMX080', segment='F', puck_in_segment=2),\n",
" # SetTellPosition(puck_name='PSIMX107', segment='A', puck_in_segment=1),\n",
" # SetTellPosition(puck_name='PSIMX117', segment='A', puck_in_segment=2),\n",
" #]\n",
" pucks=[\n",
" SetTellPosition(puck_name='PUCK006', segment='F', puck_in_segment=1),\n",
" SetTellPosition(puck_name='PUCK003', segment='F', puck_in_segment=2),\n",
" SetTellPosition(puck_name='PUCK002', segment='A', puck_in_segment=1),\n",
" SetTellPosition(puck_name='PUCK001', segment='A', puck_in_segment=2),\n",
" ]\n",
" #pucks = []\n",
" )\n",
"\n",
" # Call the PUT method to update the tell_position\n",
" try:\n",
" api_response = api_instance.set_tell_positions_pucks_set_tell_positions_put(\n",
" set_tell_position_request=payload\n",
" ) # Pass the entire payload as a single parameter\n",
"\n",
" print(\"The response of PucksApi->pucks_puck_id_tell_position_put:\\n\")\n",
" pprint(api_response)\n",
"\n",
" except Exception as e:\n",
" print(f\"Exception when calling PucksApi: {e}\")\n"
],
"id": "37e3eac6760150ee",
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"The response of PucksApi->pucks_puck_id_tell_position_put:\n",
"\n",
"[{'message': 'Tell position updated successfully.',\n",
" 'new_position': 'F1',\n",
" 'previous_position': None,\n",
" 'puck_name': 'PUCK006',\n",
" 'status': 'updated',\n",
" 'tell': 'X06DA'},\n",
" {'message': 'Tell position updated successfully.',\n",
" 'new_position': 'F2',\n",
" 'previous_position': None,\n",
" 'puck_name': 'PUCK003',\n",
" 'status': 'updated',\n",
" 'tell': 'X06DA'},\n",
" {'message': 'Tell position updated successfully.',\n",
" 'new_position': 'A1',\n",
" 'previous_position': None,\n",
" 'puck_name': 'PUCK002',\n",
" 'status': 'updated',\n",
" 'tell': 'X06DA'},\n",
" {'message': 'Tell position updated successfully.',\n",
" 'new_position': 'A2',\n",
" 'previous_position': None,\n",
" 'puck_name': 'PUCK001',\n",
" 'status': 'updated',\n",
" 'tell': 'X06DA'}]\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n",
" warnings.warn(\n"
]
}
],
"execution_count": 78
},
{
"metadata": {
"ExecuteTime": {
"end_time": "2025-03-07T12:40:09.769132Z",
"start_time": "2025-03-07T12:40:09.752103Z"
}
},
"cell_type": "code",
"source": [
"# Get puck_id puck_name sample_id sample_name of pucks in the tell\n",
"\n",
"with aareDBclient.ApiClient(configuration) as api_client:\n",
" # Create an instance of the API class\n",
" api_instance = aareDBclient.PucksApi(api_client)\n",
"\n",
" # GET request: Fetch all pucks in the tell\n",
" try:\n",
" # Call the API method to fetch pucks\n",
" all_pucks_response = api_instance.get_pucks_with_tell_position_pucks_with_tell_position_get(tell='X06DA')\n",
"\n",
" # Debug response structure by printing it in JSON format\n",
" formatted_response = json.dumps(\n",
" [p.to_dict() for p in all_pucks_response], # Assuming the API response can be converted to dicts\n",
" indent=4 # Use indentation for readability\n",
" )\n",
" #print(\"The response of PucksApi->get_all_pucks_in_tell (formatted):\\n\")\n",
" #print(formatted_response)\n",
"\n",
" # Iterate through each puck and print information\n",
" for p in all_pucks_response:\n",
" print(f\"Puck ID: {p.id}, Puck Name: {p.puck_name}\")\n",
"\n",
" ## Check if the puck has any samples\n",
" if hasattr(p, 'samples') and p.samples: # Ensure 'samples' attribute exists and is not empty\n",
" for sample in p.samples:\n",
" print(f\" Sample ID: {sample.id}, Sample Name: {sample.sample_name}, Position: {sample.position}, Mount count: {sample.mount_count}\")\n",
" else:\n",
" print(\" No samples found in this puck.\")\n",
"\n",
" except ApiException as e:\n",
" print(\"Exception when calling PucksApi->get_all_pucks_in_tell: %s\\n\" % e)"
],
"id": "51578d944878db6a",
"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n",
" warnings.warn(\n"
]
}
],
"execution_count": 2
},
{
"metadata": {
"ExecuteTime": {
"end_time": "2025-03-07T20:50:06.182786Z",
"start_time": "2025-03-07T20:50:06.165153Z"
}
},
"cell_type": "code",
"source": [
"from aareDBclient import SampleEventCreate\n",
"\n",
"# Create an event for a sample\n",
"\n",
"with aareDBclient.ApiClient(configuration) as api_client:\n",
" # Instance of the API client\n",
" api_instance = aareDBclient.SamplesApi(api_client)\n",
" sample_id=258\n",
" try:\n",
" # Define the payload with only `event_type`\n",
" sample_event_create = SampleEventCreate(\n",
" sample_id=sample_id,\n",
" event_type=\"Centering\" # Valid event type\n",
" )\n",
"\n",
" # Debug the payload before sending\n",
" print(\"Payload being sent to API:\")\n",
" print(sample_event_create.json()) # Ensure it matches `SampleEventCreate`\n",
"\n",
" # Call the API\n",
" api_response = api_instance.create_sample_event_samples_samples_sample_id_events_post(\n",
" sample_id=sample_id, # Ensure this matches a valid sample ID in the database\n",
" sample_event_create=sample_event_create\n",
" )\n",
"\n",
" print(\"API response:\")\n",
" #pprint(api_response)\n",
"\n",
" for p in api_response:\n",
" print(p)\n",
"\n",
" except ApiException as e:\n",
" print(\"Exception when calling post_sample_event:\")\n",
" print(f\"Status Code: {e.status}\")\n",
" if e.body:\n",
" print(f\"Error Details: {e.body}\")\n"
],
"id": "4a0665f92756b486",
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Payload being sent to API:\n",
"{\"event_type\":\"Centering\"}\n",
"API response:\n",
"('id', 258)\n",
"('sample_name', 'Sample258')\n",
"('position', 14)\n",
"('puck_id', 26)\n",
"('crystalname', None)\n",
"('proteinname', None)\n",
"('positioninpuck', None)\n",
"('priority', None)\n",
"('comments', None)\n",
"('data_collection_parameters', None)\n",
"('events', [SampleEventResponse(id=492, sample_id=258, event_type='Mounting', timestamp=datetime.datetime(2025, 3, 6, 13, 50)), SampleEventResponse(id=493, sample_id=258, event_type='Unmounting', timestamp=datetime.datetime(2025, 3, 6, 13, 50, 50)), SampleEventResponse(id=573, sample_id=258, event_type='Centering', timestamp=datetime.datetime(2025, 3, 7, 21, 50, 6))])\n",
"('mount_count', 0)\n",
"('unmount_count', 0)\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n",
" warnings.warn(\n"
]
}
],
"execution_count": 46
},
{
"metadata": {},
"cell_type": "code",
"outputs": [],
"execution_count": null,
"source": [
"### not working\n",
"with aareDBclient.ApiClient(configuration) as api_client:\n",
" # Create an instance of the Samples API class\n",
" api_instance = aareDBclient.SamplesApi(api_client)\n",
"\n",
" try:\n",
" # Get the last sample event\n",
" last_event_response = api_instance.get_last_sample_event_samples_samples_sample_id_events_last_get(27)\n",
" print(\"The response of get_last_sample_event:\\n\")\n",
" pprint(last_event_response)\n",
"\n",
" except ApiException as e:\n",
" print(\"Exception when calling get_last_sample_event: %s\\n\" % e)\n"
],
"id": "f1d171700d6cf7fe"
},
{
"metadata": {
"ExecuteTime": {
"end_time": "2025-03-14T12:37:36.649779Z",
"start_time": "2025-03-14T12:37:36.597340Z"
}
},
"cell_type": "code",
"source": [
"# Post multiple images to the sample database\n",
"\n",
"import os\n",
"import mimetypes\n",
"import requests\n",
"\n",
"# List of file paths to the images you want to upload\n",
"#file_paths = [\n",
"# \"backend/tests/sample_image/0_200.jpg\",\n",
"# \"backend/tests/sample_image/90_200.jpg\",\n",
"# \"backend/tests/sample_image/0_700.jpg\",\n",
"# \"backend/tests/sample_image/90_700.jpg\",\n",
"#]\n",
"\n",
"file_paths = [\"backend/tests/sample_image/mount.jpeg.jpg\"]\n",
"\n",
"\n",
"# Sample ID (ensure this exists on your backend)\n",
"sample_id = 299\n",
"\n",
"# Base URL for the upload endpoint\n",
"url = f\"https://127.0.0.1:8000/samples/{sample_id}/upload-images\"\n",
"\n",
"# Iterate through each file and upload it\n",
"for file_path in file_paths:\n",
" # Determine file name and MIME type\n",
" filename = os.path.basename(file_path)\n",
" mime_type, _ = mimetypes.guess_type(file_path)\n",
" if mime_type is None:\n",
" mime_type = \"application/octet-stream\"\n",
"\n",
" # Open the file for uploading\n",
" with open(file_path, \"rb\") as file_data:\n",
" files = {\n",
" # Use key \"uploaded_file\" as required by your API\n",
" \"uploaded_file\": (filename, file_data, mime_type)\n",
" }\n",
" headers = {\n",
" \"accept\": \"application/json\"\n",
" }\n",
"\n",
" # Send the POST request\n",
" print(f\"Uploading {filename}...\")\n",
" response = requests.post(url, headers=headers, files=files, verify=False)\n",
"\n",
" # Check the API response\n",
" print(f\"API Response for {filename}:\")\n",
" print(response.status_code)\n",
" try:\n",
" print(response.json())\n",
" except Exception:\n",
" print(response.text)\n"
],
"id": "11f62976d2e7d9b1",
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Uploading mount.jpeg.jpg...\n",
"API Response for mount.jpeg.jpg:\n",
"404\n",
"{'detail': 'Sample not found'}\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n",
" warnings.warn(\n"
]
}
],
"execution_count": 2
},
{
"metadata": {},
"cell_type": "code",
"outputs": [],
"execution_count": null,
"source": "help(api_instance.upload_sample_images_samples_samples_sample_id_upload_images_post)",
"id": "cb1b99e6327fff84"
},
{
"metadata": {
"ExecuteTime": {
"end_time": "2025-03-11T15:05:58.348843Z",
"start_time": "2025-03-11T15:05:58.331240Z"
}
},
"cell_type": "code",
"source": [
"# post experiment results to sample database\n",
"\n",
"from aareDBclient.models import (\n",
" ExperimentParametersCreate,\n",
" RotationParameters,\n",
" BeamlineParameters,\n",
" GridScanParamers\n",
")\n",
"\n",
"\n",
"# Build the nested parameters\n",
"rotation = RotationParameters(\n",
" omegaStart_deg=0.0,\n",
" omegaStep=90.0,\n",
" phi=10.0,\n",
" chi=0.0,\n",
" numberOfImages=4,\n",
" exposureTime_s=0.02\n",
")\n",
"\n",
"#gridscan = GridScanParamers(\n",
"# xStart=0.0,\n",
"# xStep=0.1,\n",
"# yStart=0.0,\n",
"# yStep= 0.1,\n",
"# zStart=0.0,\n",
"# zStep=0.0,\n",
"# numberOfImages=4600,\n",
"# exposureTime_s=0.001\n",
"#)\n",
"\n",
"# If your client code requires you to build a detector model,\n",
"# you can either use a Detector model or pass a dictionary.\n",
"# Here we pass a dictionary.\n",
"detector_data = {\n",
" \"manufacturer\": \"DECTRIS\",\n",
" \"model\": \"PILATUS4 2M\",\n",
" \"type\": \"photon-counting\",\n",
" \"serialNumber\": \"16684dscsd668468\",\n",
" \"detectorDistance_mm\": 95.0,\n",
" \"beamCenterX_px\": 512.0,\n",
" \"beamCenterY_px\": 512.0,\n",
" \"pixelSizeX_um\": 150.0,\n",
" \"pixelSizeY_um\": 150.0,\n",
"}\n",
"\n",
"beamline_params = BeamlineParameters(\n",
" synchrotron=\"Swiss Light Source\",\n",
" beamline=\"PXIII\",\n",
" detector=detector_data,\n",
" wavelength=1.0,\n",
" ringCurrent_A=0.0,\n",
" ringMode=\"Machine Down\",\n",
" monochromator=\"Si111\",\n",
" transmission=1.00,\n",
" focusingOptic=\"Kirkpatrick-Baez\",\n",
" beamlineFluxAtSample_ph_s=0,\n",
" beamSizeWidth=30.0,\n",
" beamSizeHeight=30.0,\n",
" rotation=rotation # Optional nested parameter\n",
" #gridScan=gridscan\n",
" # gridScan and jet are optional and can be added similarly\n",
")\n",
"\n",
"# Prepare the experiment parameters payload.\n",
"# Note that the run_number will be set on the server side, so you can leave\n",
"# it out or set it to a dummy value if your client model requires it.\n",
"experiment_params_payload = ExperimentParametersCreate(\n",
" # run_number can be omitted/ignored if computed on the server\n",
" beamline_parameters=beamline_params,\n",
" sample_id=299 # change sample_id to an existing sample in your database\n",
")\n",
"\n",
"# Now, use the API instance to send the POST request\n",
"with aareDBclient.ApiClient(configuration) as api_client:\n",
" api_instance = aareDBclient.SamplesApi(api_client)\n",
"\n",
" try:\n",
" # Call the endpoint. The endpoint path expects the sample_id.\n",
" api_response = api_instance.create_experiment_parameters_for_sample_samples_samples_sample_id_experiment_parameters_post(\n",
" sample_id=experiment_params_payload.sample_id,\n",
" experiment_parameters_create=experiment_params_payload\n",
")\n",
"\n",
" print(\"API Response:\")\n",
" print(api_response)\n",
" except ApiException as e:\n",
" print(\"Exception when calling ExperimentParametersApi->create_experiment_parameters_for_sample:\")\n",
" print(e)\n"
],
"id": "421ba0710f29a5fa",
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"API Response:\n",
"run_number=1 beamline_parameters=BeamlineParameters(synchrotron='Swiss Light Source', beamline='PXIII', detector=Detector(manufacturer='DECTRIS', model='PILATUS4 2M', type='photon-counting', serial_number='16684dscsd668468', detector_distance_mm=95.0, beam_center_x_px=512.0, beam_center_y_px=512.0, pixel_size_x_um=150.0, pixel_size_y_um=150.0), wavelength=1.0, ring_current_a=0.0, ring_mode='Machine Down', undulator=None, undulatorgap_mm=None, monochromator='Si111', transmission=1.0, focusing_optic='Kirkpatrick-Baez', beamline_flux_at_sample_ph_s=0.0, beam_size_width=30.0, beam_size_height=30.0, rotation=RotationParameters(omega_start_deg=0.0, omega_step=90.0, chi=0.0, phi=10.0, number_of_images=4, exposure_time_s=0.02), grid_scan=None, jet=None, cryojet_temperature_k=None, humidifier_temperature_k=None, humidifier_humidity=None) sample_id=299 id=1\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n",
" warnings.warn(\n"
]
}
],
"execution_count": 49
},
{
"metadata": {
"ExecuteTime": {
"end_time": "2025-03-04T09:22:51.456656Z",
"start_time": "2025-03-04T09:22:51.403762Z"
}
},
"cell_type": "code",
"source": [
"# get experiment results to sample database\n",
"\n",
"with aareDBclient.ApiClient(configuration) as api_client:\n",
" # Create an instance of the API class\n",
" api_instance = aareDBclient.SamplesApi(api_client)\n",
"\n",
" # GET request: Fetch all pucks in the tell\n",
" try:\n",
" # Call the API method to fetch pucks\n",
" all_results_response = api_instance.get_sample_results_samples_results_get(active_pgroup=\"p20001\")\n",
"\n",
" # Debug response structure by printing it in JSON format\n",
" formatted_response = json.dumps(\n",
" [p.to_dict() for p in all_results_response], # Assuming the API response can be converted to dicts\n",
" indent=4 # Use indentation for readability\n",
" )\n",
" print(\"The response of PucksApi->get_all_pucks_in_tell (formatted):\\n\")\n",
" print(formatted_response)\n",
"\n",
" ## Iterate through each puck and print information\n",
" #for p in all_results_response:\n",
" # print(f\"Puck ID: {p.id}, Puck Name: {p.puck_name}\")\n",
" #\n",
" # ## Check if the puck has any samples\n",
" # if hasattr(p, 'samples') and p.samples: # Ensure 'samples' attribute exists and is not empty\n",
" # for sample in p.samples:\n",
" # print(f\" Sample ID: {sample.id}, Sample Name: {sample.sample_name}, Position: {sample.position}, Mount count: {sample.mount_count}\")\n",
" # else:\n",
" # print(\" No samples found in this puck.\")\n",
" #\n",
" except ApiException as e:\n",
" print(\"Exception when calling PucksApi->get_all_pucks_in_tell: %s\\n\" % e)"
],
"id": "6079a4f10102e906",
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"The response of PucksApi->get_all_pucks_in_tell (formatted):\n",
"\n",
"[\n",
" {\n",
" \"sample_id\": 1,\n",
" \"sample_name\": \"Sample001\",\n",
" \"puck_name\": \"PUCK-001\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 2,\n",
" \"sample_name\": \"Sample002\",\n",
" \"puck_name\": \"PUCK-001\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 3,\n",
" \"sample_name\": \"Sample003\",\n",
" \"puck_name\": \"PUCK-001\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 4,\n",
" \"sample_name\": \"Sample004\",\n",
" \"puck_name\": \"PUCK-001\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 5,\n",
" \"sample_name\": \"Sample005\",\n",
" \"puck_name\": \"PUCK-001\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 6,\n",
" \"sample_name\": \"Sample006\",\n",
" \"puck_name\": \"PUCK-001\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 7,\n",
" \"sample_name\": \"Sample007\",\n",
" \"puck_name\": \"PUCK-001\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 8,\n",
" \"sample_name\": \"Sample008\",\n",
" \"puck_name\": \"PUCK-001\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 9,\n",
" \"sample_name\": \"Sample009\",\n",
" \"puck_name\": \"PUCK-001\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 10,\n",
" \"sample_name\": \"Sample010\",\n",
" \"puck_name\": \"PUCK-001\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 11,\n",
" \"sample_name\": \"Sample011\",\n",
" \"puck_name\": \"PUCK-001\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 12,\n",
" \"sample_name\": \"Sample012\",\n",
" \"puck_name\": \"PUCK-001\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 13,\n",
" \"sample_name\": \"Sample013\",\n",
" \"puck_name\": \"PUCK-001\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 14,\n",
" \"sample_name\": \"Sample014\",\n",
" \"puck_name\": \"PUCK-001\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 15,\n",
" \"sample_name\": \"Sample015\",\n",
" \"puck_name\": \"PUCK-001\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": [\n",
" {\n",
" \"run_number\": 1,\n",
" \"beamline_parameters\": {\n",
" \"synchrotron\": \"Swiss Light Source\",\n",
" \"beamline\": \"PXIII\",\n",
" \"detector\": {\n",
" \"manufacturer\": \"DECTRIS\",\n",
" \"model\": \"PILATUS4 2M\",\n",
" \"type\": \"photon-counting\",\n",
" \"serialNumber\": \"16684dscsd668468\",\n",
" \"detectorDistance_mm\": 95.0,\n",
" \"beamCenterX_px\": 512.0,\n",
" \"beamCenterY_px\": 512.0,\n",
" \"pixelSizeX_um\": 150.0,\n",
" \"pixelSizeY_um\": 150.0\n",
" },\n",
" \"wavelength\": 1.0,\n",
" \"ringCurrent_A\": 0.0,\n",
" \"ringMode\": \"Machine Down\",\n",
" \"monochromator\": \"Si111\",\n",
" \"transmission\": 1.0,\n",
" \"focusingOptic\": \"Kirkpatrick-Baez\",\n",
" \"beamlineFluxAtSample_ph_s\": 0.0,\n",
" \"beamSizeWidth\": 30.0,\n",
" \"beamSizeHeight\": 30.0,\n",
" \"rotation\": {\n",
" \"omegaStart_deg\": 0.0,\n",
" \"omegaStep\": 0.5,\n",
" \"chi\": 0.0,\n",
" \"phi\": 10.0,\n",
" \"numberOfImages\": 3600,\n",
" \"exposureTime_s\": 0.02\n",
" },\n",
" \"undulator\": null,\n",
" \"undulatorgap_mm\": null,\n",
" \"gridScan\": null,\n",
" \"jet\": null,\n",
" \"cryojetTemperature_K\": null,\n",
" \"humidifierTemperature_K\": null,\n",
" \"humidifierHumidity\": null\n",
" },\n",
" \"sample_id\": 15,\n",
" \"id\": 8\n",
" },\n",
" {\n",
" \"run_number\": 2,\n",
" \"beamline_parameters\": {\n",
" \"synchrotron\": \"Swiss Light Source\",\n",
" \"beamline\": \"PXIII\",\n",
" \"detector\": {\n",
" \"manufacturer\": \"DECTRIS\",\n",
" \"model\": \"PILATUS4 2M\",\n",
" \"type\": \"photon-counting\",\n",
" \"serialNumber\": \"16684dscsd668468\",\n",
" \"detectorDistance_mm\": 95.0,\n",
" \"beamCenterX_px\": 512.0,\n",
" \"beamCenterY_px\": 512.0,\n",
" \"pixelSizeX_um\": 150.0,\n",
" \"pixelSizeY_um\": 150.0\n",
" },\n",
" \"wavelength\": 1.0,\n",
" \"ringCurrent_A\": 0.0,\n",
" \"ringMode\": \"Machine Down\",\n",
" \"monochromator\": \"Si111\",\n",
" \"transmission\": 1.0,\n",
" \"focusingOptic\": \"Kirkpatrick-Baez\",\n",
" \"beamlineFluxAtSample_ph_s\": 0.0,\n",
" \"beamSizeWidth\": 30.0,\n",
" \"beamSizeHeight\": 30.0,\n",
" \"rotation\": {\n",
" \"omegaStart_deg\": 0.0,\n",
" \"omegaStep\": 90.0,\n",
" \"chi\": 0.0,\n",
" \"phi\": 10.0,\n",
" \"numberOfImages\": 4,\n",
" \"exposureTime_s\": 0.02\n",
" },\n",
" \"undulator\": null,\n",
" \"undulatorgap_mm\": null,\n",
" \"gridScan\": null,\n",
" \"jet\": null,\n",
" \"cryojetTemperature_K\": null,\n",
" \"humidifierTemperature_K\": null,\n",
" \"humidifierHumidity\": null\n",
" },\n",
" \"sample_id\": 15,\n",
" \"id\": 9\n",
" },\n",
" {\n",
" \"run_number\": 3,\n",
" \"beamline_parameters\": {\n",
" \"synchrotron\": \"Swiss Light Source\",\n",
" \"beamline\": \"PXIII\",\n",
" \"detector\": {\n",
" \"manufacturer\": \"DECTRIS\",\n",
" \"model\": \"PILATUS4 2M\",\n",
" \"type\": \"photon-counting\",\n",
" \"serialNumber\": \"16684dscsd668468\",\n",
" \"detectorDistance_mm\": 95.0,\n",
" \"beamCenterX_px\": 512.0,\n",
" \"beamCenterY_px\": 512.0,\n",
" \"pixelSizeX_um\": 150.0,\n",
" \"pixelSizeY_um\": 150.0\n",
" },\n",
" \"wavelength\": 1.0,\n",
" \"ringCurrent_A\": 0.0,\n",
" \"ringMode\": \"Machine Down\",\n",
" \"monochromator\": \"Si111\",\n",
" \"transmission\": 1.0,\n",
" \"focusingOptic\": \"Kirkpatrick-Baez\",\n",
" \"beamlineFluxAtSample_ph_s\": 0.0,\n",
" \"beamSizeWidth\": 30.0,\n",
" \"beamSizeHeight\": 30.0,\n",
" \"gridScan\": {\n",
" \"xStart\": 0.0,\n",
" \"xStep\": 0.1,\n",
" \"yStart\": 0.0,\n",
" \"yStep\": 0.1,\n",
" \"zStart\": 0.0,\n",
" \"zStep\": 0.0,\n",
" \"numberOfImages\": 4600,\n",
" \"exposureTime_s\": 0.001\n",
" },\n",
" \"undulator\": null,\n",
" \"undulatorgap_mm\": null,\n",
" \"rotation\": null,\n",
" \"jet\": null,\n",
" \"cryojetTemperature_K\": null,\n",
" \"humidifierTemperature_K\": null,\n",
" \"humidifierHumidity\": null\n",
" },\n",
" \"sample_id\": 15,\n",
" \"id\": 10\n",
" }\n",
" ]\n",
" },\n",
" {\n",
" \"sample_id\": 16,\n",
" \"sample_name\": \"Sample016\",\n",
" \"puck_name\": \"PUCK-001\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [\n",
" {\n",
" \"id\": 3,\n",
" \"filepath\": \"images/p20001/2025-02-26/Dewar One/PUCK-001/16/bb_raster_0.jpg\",\n",
" \"comment\": null\n",
" },\n",
" {\n",
" \"id\": 4,\n",
" \"filepath\": \"images/p20001/2025-02-26/Dewar One/PUCK-001/16/bb_raster_90.jpg\",\n",
" \"comment\": null\n",
" }\n",
" ],\n",
" \"experiment_runs\": [\n",
" {\n",
" \"run_number\": 1,\n",
" \"beamline_parameters\": {\n",
" \"synchrotron\": \"Swiss Light Source\",\n",
" \"beamline\": \"PXIII\",\n",
" \"detector\": {\n",
" \"manufacturer\": \"DECTRIS\",\n",
" \"model\": \"PILATUS4 2M\",\n",
" \"type\": \"photon-counting\",\n",
" \"serialNumber\": \"16684dscsd668468\",\n",
" \"detectorDistance_mm\": 95.0,\n",
" \"beamCenterX_px\": 512.0,\n",
" \"beamCenterY_px\": 512.0,\n",
" \"pixelSizeX_um\": 150.0,\n",
" \"pixelSizeY_um\": 150.0\n",
" },\n",
" \"wavelength\": 1.0,\n",
" \"ringCurrent_A\": 0.0,\n",
" \"ringMode\": \"Machine Down\",\n",
" \"monochromator\": \"Si111\",\n",
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" \"synchrotron\": \"Swiss Light Source\",\n",
" \"beamline\": \"PXIII\",\n",
" \"detector\": {\n",
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" \"model\": \"PILATUS4 2M\",\n",
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" \"model\": \"PILATUS4 2M\",\n",
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" },\n",
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" \"cryojetTemperature_K\": null,\n",
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" \"humidifierHumidity\": null\n",
" },\n",
" \"sample_id\": 16,\n",
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" }\n",
" ]\n",
" },\n",
" {\n",
" \"sample_id\": 17,\n",
" \"sample_name\": \"Sample017\",\n",
" \"puck_name\": \"PUCK002\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 18,\n",
" \"sample_name\": \"Sample018\",\n",
" \"puck_name\": \"PUCK002\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
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" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 20,\n",
" \"sample_name\": \"Sample020\",\n",
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" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
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" \"sample_name\": \"Sample021\",\n",
" \"puck_name\": \"PUCK002\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
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" },\n",
" {\n",
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" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
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" },\n",
" {\n",
" \"sample_id\": 23,\n",
" \"sample_name\": \"Sample023\",\n",
" \"puck_name\": \"PUCK002\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
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" },\n",
" {\n",
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" \"sample_name\": \"Sample024\",\n",
" \"puck_name\": \"PUCK003\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 25,\n",
" \"sample_name\": \"Sample025\",\n",
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" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 26,\n",
" \"sample_name\": \"Sample026\",\n",
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" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
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" },\n",
" {\n",
" \"sample_id\": 27,\n",
" \"sample_name\": \"Sample027\",\n",
" \"puck_name\": \"PUCK003\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 28,\n",
" \"sample_name\": \"Sample028\",\n",
" \"puck_name\": \"PUCK003\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 29,\n",
" \"sample_name\": \"Sample029\",\n",
" \"puck_name\": \"PUCK004\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 30,\n",
" \"sample_name\": \"Sample030\",\n",
" \"puck_name\": \"PUCK005\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 31,\n",
" \"sample_name\": \"Sample031\",\n",
" \"puck_name\": \"PUCK005\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 32,\n",
" \"sample_name\": \"Sample032\",\n",
" \"puck_name\": \"PUCK005\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 33,\n",
" \"sample_name\": \"Sample033\",\n",
" \"puck_name\": \"PUCK005\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
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" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
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" },\n",
" {\n",
" \"sample_id\": 35,\n",
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" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
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" },\n",
" {\n",
" \"sample_id\": 36,\n",
" \"sample_name\": \"Sample036\",\n",
" \"puck_name\": \"PUCK005\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
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" },\n",
" {\n",
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" \"puck_name\": \"PUCK005\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
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" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 39,\n",
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" \"puck_name\": \"PUCK005\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 40,\n",
" \"sample_name\": \"Sample040\",\n",
" \"puck_name\": \"PUCK005\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
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" },\n",
" {\n",
" \"sample_id\": 41,\n",
" \"sample_name\": \"Sample041\",\n",
" \"puck_name\": \"PUCK005\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 42,\n",
" \"sample_name\": \"Sample042\",\n",
" \"puck_name\": \"PUCK005\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
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" \"sample_name\": \"Sample043\",\n",
" \"puck_name\": \"PUCK005\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
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" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
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" \"puck_name\": \"PUCK006\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
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" },\n",
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" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
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" },\n",
" {\n",
" \"sample_id\": 47,\n",
" \"sample_name\": \"Sample047\",\n",
" \"puck_name\": \"PUCK006\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 48,\n",
" \"sample_name\": \"Sample048\",\n",
" \"puck_name\": \"PUCK007\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 49,\n",
" \"sample_name\": \"Sample049\",\n",
" \"puck_name\": \"PUCK007\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 50,\n",
" \"sample_name\": \"Sample050\",\n",
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" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
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" },\n",
" {\n",
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" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
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" },\n",
" {\n",
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" \"sample_name\": \"Sample052\",\n",
" \"puck_name\": \"PUCK007\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 53,\n",
" \"sample_name\": \"Sample053\",\n",
" \"puck_name\": \"PUCK007\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 54,\n",
" \"sample_name\": \"Sample054\",\n",
" \"puck_name\": \"PUCK007\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 55,\n",
" \"sample_name\": \"Sample055\",\n",
" \"puck_name\": \"PUCK007\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 56,\n",
" \"sample_name\": \"Sample056\",\n",
" \"puck_name\": \"PUCK007\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 57,\n",
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" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
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" \"sample_name\": \"Sample058\",\n",
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" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 59,\n",
" \"sample_name\": \"Sample059\",\n",
" \"puck_name\": \"PUCK007\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 60,\n",
" \"sample_name\": \"Sample060\",\n",
" \"puck_name\": \"PUCK007\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" },\n",
" {\n",
" \"sample_id\": 61,\n",
" \"sample_name\": \"Sample061\",\n",
" \"puck_name\": \"PUCK007\",\n",
" \"dewar_name\": \"Dewar One\",\n",
" \"images\": [],\n",
" \"experiment_runs\": []\n",
" }\n",
"]\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n",
" warnings.warn(\n"
]
}
],
"execution_count": 2
}
],
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"name": "python3"
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