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aaredb/testfunctions.ipynb
GotthardG b04c7b8c95 Add Image models and clean up test code structure 
Introduced `ImageCreate` and `Image` models to handle image-related data in the backend. Improved the organization and readability of the testing notebook by consolidating and formatting code into distinct sections with markdown cells.
2025-02-26 15:11:20 +01:00

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{
"cells": [
{
"metadata": {
"ExecuteTime": {
"end_time": "2025-02-26T13:09:58.719218Z",
"start_time": "2025-02-26T13:09:58.716771Z"
}
},
"cell_type": "code",
"source": [
"import json\n",
"\n",
"#from nbclient.client import timestamp\n",
"\n",
"import backend.aareDBclient as aareDBclient\n",
"from aareDBclient.rest import ApiException\n",
"from pprint import pprint\n",
"\n",
"#from app.data.data import sample\n",
"\n",
"#from aareDBclient import SamplesApi, ShipmentsApi, PucksApi\n",
"#from aareDBclient.models import SampleEventCreate, SetTellPosition\n",
"#from examples.examples import api_response\n",
"\n",
"print(aareDBclient.__version__)\n",
"\n",
"configuration = aareDBclient.Configuration(\n",
" #host = \"https://mx-aare-test.psi.ch:1492\"\n",
" host = \"https://127.0.0.1:8000\"\n",
")\n",
"\n",
"print(configuration.host)\n",
"\n",
"configuration.verify_ssl = False # Disable SSL verification\n",
"#print(dir(SamplesApi))"
],
"id": "3b7c27697a4d5c83",
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"0.1.0a21\n",
"https://127.0.0.1:8000\n"
]
}
],
"execution_count": 86
},
{
"metadata": {},
"cell_type": "code",
"outputs": [],
"execution_count": null,
"source": [
"## Fetch all Shipments, list corresponding dewars and pucks\n",
"\n",
"from datetime import date, datetime\n",
"from aareDBclient import ShipmentsApi\n",
"from aareDBclient.models import Shipment\n",
"\n",
"with aareDBclient.ApiClient(configuration) as api_client:\n",
" api_instance = aareDBclient.ShipmentsApi(api_client)\n",
"\n",
" try:\n",
" # Fetch all shipments\n",
" all_shipments_response = api_instance.fetch_shipments_shipments_get()\n",
"\n",
" # Print shipment names and their associated puck names\n",
" for shipment in all_shipments_response:\n",
" print(f\"Shipment ID: {shipment.id}, Shipment Name: {shipment.shipment_name}\")\n",
" if hasattr(shipment, 'dewars') and shipment.dewars: # Ensure 'dewars' exists\n",
" for dewar in shipment.dewars:\n",
" print(f\" Dewar ID: {dewar.id}, Dewar Name: {dewar.dewar_name}, Dewar Unique ID: {dewar.unique_id} \")\n",
"\n",
" if hasattr(dewar, 'pucks') and dewar.pucks: # Ensure 'pucks' exists\n",
" for puck in dewar.pucks:\n",
" print(f\" Puck ID: {puck.id}, Puck Name: {puck.puck_name}\")\n",
" else:\n",
" print(\" No pucks found in this dewar.\")\n",
" else:\n",
" print(\" No dewars found in this shipment.\")\n",
"\n",
" except ApiException as e:\n",
" print(f\"Exception when calling ShipmentsApi->fetch_shipments_shipments_get: {e}\")\n"
],
"id": "4955b858f2cef93e"
},
{
"metadata": {
"ExecuteTime": {
"end_time": "2025-02-25T15:47:34.956061Z",
"start_time": "2025-02-25T15:47:34.941372Z"
}
},
"cell_type": "code",
"source": [
"from datetime import date\n",
"from aareDBclient import LogisticsApi\n",
"from aareDBclient.models import LogisticsEventCreate # Import required model\n",
"\n",
"with aareDBclient.ApiClient(configuration) as api_client:\n",
" api_instance = aareDBclient.LogisticsApi(api_client)\n",
"\n",
" try:\n",
" # Create payload using the required model\n",
" logistics_event_create = LogisticsEventCreate(\n",
" dewar_qr_code='923db239427869be',\n",
" location_qr_code='A2-X06SA',\n",
" transaction_type='incoming',\n",
" timestamp=date.today() # Adjust if the API expects datetime\n",
" )\n",
"\n",
" # Pass the payload to the API function\n",
" api_response = api_instance.scan_dewar_logistics_dewar_scan_post(\n",
" logistics_event_create=logistics_event_create # Pass as an object\n",
" )\n",
" print(\"API Response:\", api_response)\n",
"\n",
" except ApiException as e:\n",
" print(f\"Exception when calling LogisticsApi->scan_dewar_logistics_dewar_scan_post: {e}\")\n",
"\n",
" try:\n",
" # Create payload using the required model\n",
" logistics_event_create = LogisticsEventCreate(\n",
" dewar_qr_code='923db239427869be',\n",
" location_qr_code='A2-X06SA',\n",
" transaction_type='refill',\n",
" timestamp=date.today() # Adjust if the API expects datetime\n",
" )\n",
"\n",
" # Pass the payload to the API function\n",
" api_response = api_instance.scan_dewar_logistics_dewar_scan_post(\n",
" logistics_event_create=logistics_event_create # Pass as an object\n",
" )\n",
" print(\"API Response:\", api_response)\n",
"\n",
" except ApiException as e:\n",
" print(f\"Exception when calling LogisticsApi->scan_dewar_logistics_dewar_scan_post: {e}\")\n",
"\n",
" try:\n",
" # Create payload using the required model\n",
" logistics_event_create = LogisticsEventCreate(\n",
" dewar_qr_code='923db239427869be',\n",
" location_qr_code='X06DA-Beamline',\n",
" transaction_type='beamline',\n",
" timestamp=date.today() # Adjust if the API expects datetime\n",
" )\n",
"\n",
" # Pass the payload to the API function\n",
" api_response = api_instance.scan_dewar_logistics_dewar_scan_post(\n",
" logistics_event_create=logistics_event_create # Pass as an object\n",
" )\n",
" print(\"API Response:\", api_response)\n",
"\n",
" except ApiException as e:\n",
" print(f\"Exception when calling LogisticsApi->scan_dewar_logistics_dewar_scan_post: {e}\")\n"
],
"id": "8fd3638bffaecd23",
"outputs": [
{
"ename": "TypeError",
"evalue": "ApiClient.call_api() got an unexpected keyword argument 'path_params'",
"output_type": "error",
"traceback": [
"\u001B[0;31m---------------------------------------------------------------------------\u001B[0m",
"\u001B[0;31mTypeError\u001B[0m Traceback (most recent call last)",
"Cell \u001B[0;32mIn[43], line 19\u001B[0m\n\u001B[1;32m 15\u001B[0m \u001B[38;5;28;01mtry\u001B[39;00m:\n\u001B[1;32m 16\u001B[0m \u001B[38;5;28;01mwith\u001B[39;00m \u001B[38;5;28mopen\u001B[39m(file_path, \u001B[38;5;124m\"\u001B[39m\u001B[38;5;124mrb\u001B[39m\u001B[38;5;124m\"\u001B[39m) \u001B[38;5;28;01mas\u001B[39;00m file_data:\n\u001B[1;32m 17\u001B[0m \u001B[38;5;66;03m# Use the low-level call_api method; note that the files parameter here is\u001B[39;00m\n\u001B[1;32m 18\u001B[0m \u001B[38;5;66;03m# a dictionary with key matching the FastAPI parameter name.\u001B[39;00m\n\u001B[0;32m---> 19\u001B[0m response \u001B[38;5;241m=\u001B[39m \u001B[43mapi_client\u001B[49m\u001B[38;5;241;43m.\u001B[39;49m\u001B[43mcall_api\u001B[49m\u001B[43m(\u001B[49m\n\u001B[1;32m 20\u001B[0m \u001B[43m \u001B[49m\u001B[38;5;124;43mf\u001B[39;49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[38;5;124;43m/\u001B[39;49m\u001B[38;5;132;43;01m{\u001B[39;49;00m\u001B[43msample_id\u001B[49m\u001B[38;5;132;43;01m}\u001B[39;49;00m\u001B[38;5;124;43m/upload_images\u001B[39;49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[43m,\u001B[49m\n\u001B[1;32m 21\u001B[0m \u001B[43m \u001B[49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[38;5;124;43mPOST\u001B[39;49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[43m,\u001B[49m\n\u001B[1;32m 22\u001B[0m \u001B[43m \u001B[49m\u001B[43mpath_params\u001B[49m\u001B[38;5;241;43m=\u001B[39;49m\u001B[43m{\u001B[49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[38;5;124;43msample_id\u001B[39;49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[43m:\u001B[49m\u001B[43m \u001B[49m\u001B[43msample_id\u001B[49m\u001B[43m}\u001B[49m\u001B[43m,\u001B[49m\n\u001B[1;32m 23\u001B[0m \u001B[43m \u001B[49m\u001B[43mfiles\u001B[49m\u001B[38;5;241;43m=\u001B[39;49m\u001B[43m{\u001B[49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[38;5;124;43muploaded_file\u001B[39;49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[43m:\u001B[49m\u001B[43m \u001B[49m\u001B[43m(\u001B[49m\u001B[43mfilename\u001B[49m\u001B[43m,\u001B[49m\u001B[43m \u001B[49m\u001B[43mfile_data\u001B[49m\u001B[43m,\u001B[49m\u001B[43m \u001B[49m\u001B[43mmime_type\u001B[49m\u001B[43m)\u001B[49m\u001B[43m}\u001B[49m\n\u001B[1;32m 24\u001B[0m \u001B[43m \u001B[49m\u001B[43m)\u001B[49m\n\u001B[1;32m 25\u001B[0m \u001B[38;5;28mprint\u001B[39m(\u001B[38;5;124m\"\u001B[39m\u001B[38;5;124mAPI Response:\u001B[39m\u001B[38;5;124m\"\u001B[39m)\n\u001B[1;32m 26\u001B[0m \u001B[38;5;28mprint\u001B[39m(response)\n",
"\u001B[0;31mTypeError\u001B[0m: ApiClient.call_api() got an unexpected keyword argument 'path_params'"
]
}
],
"execution_count": 43
},
{
"metadata": {
"ExecuteTime": {
"end_time": "2025-02-26T12:04:05.046079Z",
"start_time": "2025-02-26T12:04:04.954761Z"
}
},
"cell_type": "code",
"source": [
"# Get a list of pucks that are \"at the beamline\"\n",
"\n",
"with aareDBclient.ApiClient(configuration) as api_client:\n",
" # Create an instance of the API class\n",
" api_instance = aareDBclient.PucksApi(api_client)\n",
" get_pucks_at_beamline = aareDBclient.PucksApi(api_client)\n",
"\n",
" try:\n",
" # Create Return Address\n",
" api_response = api_instance.get_pucks_by_slot_pucks_slot_slot_identifier_get(slot_identifier='X06DA')\n",
" print(\"The response of PucksApi->get_pucks_by_slot_pucks_slot_slot_identifier_get:\\n\")\n",
" pprint(api_response)\n",
"\n",
" except ApiException as e:\n",
" print(\"Exception when calling PucksApi->get_pucks_by_slot_pucks_slot_slot_identifier_get: %s\\n\" % e)"
],
"id": "9cf3457093751b61",
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"The response of PucksApi->get_pucks_by_slot_pucks_slot_slot_identifier_get:\n",
"\n",
"[PuckWithTellPosition(id=1, puck_name='PUCK-001', puck_type='Unipuck', puck_location_in_dewar=1, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n",
" PuckWithTellPosition(id=2, puck_name='PUCK002', puck_type='Unipuck', puck_location_in_dewar=2, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n",
" PuckWithTellPosition(id=3, puck_name='PUCK003', puck_type='Unipuck', puck_location_in_dewar=3, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n",
" PuckWithTellPosition(id=4, puck_name='PUCK004', puck_type='Unipuck', puck_location_in_dewar=4, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n",
" PuckWithTellPosition(id=5, puck_name='PUCK005', puck_type='Unipuck', puck_location_in_dewar=5, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n",
" PuckWithTellPosition(id=6, puck_name='PUCK006', puck_type='Unipuck', puck_location_in_dewar=6, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n",
" PuckWithTellPosition(id=7, puck_name='PUCK007', puck_type='Unipuck', puck_location_in_dewar=7, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None)]\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n",
" warnings.warn(\n"
]
}
],
"execution_count": 77
},
{
"metadata": {
"ExecuteTime": {
"end_time": "2025-02-26T12:04:33.644201Z",
"start_time": "2025-02-26T12:04:33.625894Z"
}
},
"cell_type": "code",
"source": [
"from aareDBclient import SetTellPosition, SetTellPositionRequest\n",
"\n",
"with aareDBclient.ApiClient(configuration) as api_client:\n",
" # Create an instance of the API class\n",
" api_instance = aareDBclient.PucksApi(api_client)\n",
"\n",
" # Payload with SetTellPosition objects\n",
" payload = SetTellPositionRequest(\n",
" tell=\"X06DA\",\n",
" #pucks=[\n",
" # SetTellPosition(puck_name='PSIMX074', segment='B', puck_in_segment=1),\n",
" # SetTellPosition(puck_name='PSIMX080', segment='B', puck_in_segment=2),\n",
" # SetTellPosition(puck_name='PSIMX081', segment='C', puck_in_segment=3),\n",
" # SetTellPosition(puck_name='PSIMX084', segment='C', puck_in_segment=4),\n",
" # SetTellPosition(puck_name='PSIMX104', segment='E', puck_in_segment=5),\n",
" # SetTellPosition(puck_name='PSIMX107', segment='E', puck_in_segment=1),\n",
" # SetTellPosition(puck_name='PSIMX117', segment='F', puck_in_segment=2),\n",
" #]\n",
" #pucks=[\n",
" # SetTellPosition(puck_name='PSIMX074', segment='F', puck_in_segment=1),\n",
" # SetTellPosition(puck_name='PSIMX080', segment='F', puck_in_segment=2),\n",
" # SetTellPosition(puck_name='PSIMX107', segment='A', puck_in_segment=1),\n",
" # SetTellPosition(puck_name='PSIMX117', segment='A', puck_in_segment=2),\n",
" #]\n",
" pucks=[\n",
" SetTellPosition(puck_name='PUCK006', segment='F', puck_in_segment=1),\n",
" SetTellPosition(puck_name='PUCK003', segment='F', puck_in_segment=2),\n",
" SetTellPosition(puck_name='PUCK002', segment='A', puck_in_segment=1),\n",
" SetTellPosition(puck_name='PUCK001', segment='A', puck_in_segment=2),\n",
" ]\n",
" #pucks = []\n",
" )\n",
"\n",
" # Call the PUT method to update the tell_position\n",
" try:\n",
" api_response = api_instance.set_tell_positions_pucks_set_tell_positions_put(\n",
" set_tell_position_request=payload\n",
" ) # Pass the entire payload as a single parameter\n",
"\n",
" print(\"The response of PucksApi->pucks_puck_id_tell_position_put:\\n\")\n",
" pprint(api_response)\n",
"\n",
" except Exception as e:\n",
" print(f\"Exception when calling PucksApi: {e}\")\n"
],
"id": "37e3eac6760150ee",
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"The response of PucksApi->pucks_puck_id_tell_position_put:\n",
"\n",
"[{'message': 'Tell position updated successfully.',\n",
" 'new_position': 'F1',\n",
" 'previous_position': None,\n",
" 'puck_name': 'PUCK006',\n",
" 'status': 'updated',\n",
" 'tell': 'X06DA'},\n",
" {'message': 'Tell position updated successfully.',\n",
" 'new_position': 'F2',\n",
" 'previous_position': None,\n",
" 'puck_name': 'PUCK003',\n",
" 'status': 'updated',\n",
" 'tell': 'X06DA'},\n",
" {'message': 'Tell position updated successfully.',\n",
" 'new_position': 'A1',\n",
" 'previous_position': None,\n",
" 'puck_name': 'PUCK002',\n",
" 'status': 'updated',\n",
" 'tell': 'X06DA'},\n",
" {'message': 'Tell position updated successfully.',\n",
" 'new_position': 'A2',\n",
" 'previous_position': None,\n",
" 'puck_name': 'PUCK001',\n",
" 'status': 'updated',\n",
" 'tell': 'X06DA'}]\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n",
" warnings.warn(\n"
]
}
],
"execution_count": 78
},
{
"metadata": {
"ExecuteTime": {
"end_time": "2025-02-26T12:04:41.352140Z",
"start_time": "2025-02-26T12:04:41.331320Z"
}
},
"cell_type": "code",
"source": [
"# Get puck_id puck_name sample_id sample_name of pucks in the tell\n",
"\n",
"with aareDBclient.ApiClient(configuration) as api_client:\n",
" # Create an instance of the API class\n",
" api_instance = aareDBclient.PucksApi(api_client)\n",
"\n",
" # GET request: Fetch all pucks in the tell\n",
" try:\n",
" # Call the API method to fetch pucks\n",
" all_pucks_response = api_instance.get_pucks_with_tell_position_pucks_with_tell_position_get(tell='X06DA')\n",
"\n",
" # Debug response structure by printing it in JSON format\n",
" formatted_response = json.dumps(\n",
" [p.to_dict() for p in all_pucks_response], # Assuming the API response can be converted to dicts\n",
" indent=4 # Use indentation for readability\n",
" )\n",
" #print(\"The response of PucksApi->get_all_pucks_in_tell (formatted):\\n\")\n",
" #print(formatted_response)\n",
"\n",
" # Iterate through each puck and print information\n",
" for p in all_pucks_response:\n",
" print(f\"Puck ID: {p.id}, Puck Name: {p.puck_name}\")\n",
"\n",
" ## Check if the puck has any samples\n",
" if hasattr(p, 'samples') and p.samples: # Ensure 'samples' attribute exists and is not empty\n",
" for sample in p.samples:\n",
" print(f\" Sample ID: {sample.id}, Sample Name: {sample.sample_name}, Position: {sample.position}, Mount count: {sample.mount_count}\")\n",
" else:\n",
" print(\" No samples found in this puck.\")\n",
"\n",
" except ApiException as e:\n",
" print(\"Exception when calling PucksApi->get_all_pucks_in_tell: %s\\n\" % e)"
],
"id": "51578d944878db6a",
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Puck ID: 6, Puck Name: PUCK006\n",
" Sample ID: 44, Sample Name: Sample044, Position: 2, Mount count: 1\n",
" Sample ID: 45, Sample Name: Sample045, Position: 3, Mount count: 0\n",
" Sample ID: 46, Sample Name: Sample046, Position: 4, Mount count: 0\n",
" Sample ID: 47, Sample Name: Sample047, Position: 5, Mount count: 1\n",
"Puck ID: 3, Puck Name: PUCK003\n",
" Sample ID: 24, Sample Name: Sample024, Position: 1, Mount count: 0\n",
" Sample ID: 25, Sample Name: Sample025, Position: 5, Mount count: 1\n",
" Sample ID: 26, Sample Name: Sample026, Position: 8, Mount count: 1\n",
" Sample ID: 27, Sample Name: Sample027, Position: 11, Mount count: 1\n",
" Sample ID: 28, Sample Name: Sample028, Position: 12, Mount count: 1\n",
"Puck ID: 2, Puck Name: PUCK002\n",
" Sample ID: 17, Sample Name: Sample017, Position: 4, Mount count: 1\n",
" Sample ID: 18, Sample Name: Sample018, Position: 5, Mount count: 0\n",
" Sample ID: 19, Sample Name: Sample019, Position: 7, Mount count: 1\n",
" Sample ID: 20, Sample Name: Sample020, Position: 10, Mount count: 0\n",
" Sample ID: 21, Sample Name: Sample021, Position: 11, Mount count: 1\n",
" Sample ID: 22, Sample Name: Sample022, Position: 13, Mount count: 0\n",
" Sample ID: 23, Sample Name: Sample023, Position: 16, Mount count: 1\n",
"Puck ID: 1, Puck Name: PUCK-001\n",
" Sample ID: 1, Sample Name: Sample001, Position: 1, Mount count: 1\n",
" Sample ID: 2, Sample Name: Sample002, Position: 2, Mount count: 1\n",
" Sample ID: 3, Sample Name: Sample003, Position: 3, Mount count: 0\n",
" Sample ID: 4, Sample Name: Sample004, Position: 4, Mount count: 0\n",
" Sample ID: 5, Sample Name: Sample005, Position: 5, Mount count: 0\n",
" Sample ID: 6, Sample Name: Sample006, Position: 6, Mount count: 1\n",
" Sample ID: 7, Sample Name: Sample007, Position: 7, Mount count: 0\n",
" Sample ID: 8, Sample Name: Sample008, Position: 8, Mount count: 1\n",
" Sample ID: 9, Sample Name: Sample009, Position: 9, Mount count: 1\n",
" Sample ID: 10, Sample Name: Sample010, Position: 10, Mount count: 1\n",
" Sample ID: 11, Sample Name: Sample011, Position: 11, Mount count: 1\n",
" Sample ID: 12, Sample Name: Sample012, Position: 12, Mount count: 1\n",
" Sample ID: 13, Sample Name: Sample013, Position: 13, Mount count: 0\n",
" Sample ID: 14, Sample Name: Sample014, Position: 14, Mount count: 1\n",
" Sample ID: 15, Sample Name: Sample015, Position: 15, Mount count: 0\n",
" Sample ID: 16, Sample Name: Sample016, Position: 16, Mount count: 0\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n",
" warnings.warn(\n"
]
}
],
"execution_count": 79
},
{
"metadata": {
"ExecuteTime": {
"end_time": "2025-02-26T12:05:03.257159Z",
"start_time": "2025-02-26T12:05:03.232846Z"
}
},
"cell_type": "code",
"source": [
"from aareDBclient import SampleEventCreate\n",
"\n",
"# Create an event for a sample\n",
"\n",
"with aareDBclient.ApiClient(configuration) as api_client:\n",
" # Instance of the API client\n",
" api_instance = aareDBclient.SamplesApi(api_client)\n",
"\n",
" try:\n",
" # Define the payload with only `event_type`\n",
" sample_event_create = SampleEventCreate(\n",
" sample_id=16,\n",
" event_type=\"Mounted\" # Valid event type\n",
" )\n",
"\n",
" # Debug the payload before sending\n",
" print(\"Payload being sent to API:\")\n",
" print(sample_event_create.json()) # Ensure it matches `SampleEventCreate`\n",
"\n",
" # Call the API\n",
" api_response = api_instance.create_sample_event_samples_samples_sample_id_events_post(\n",
" sample_id=16, # Ensure this matches a valid sample ID in the database\n",
" sample_event_create=sample_event_create\n",
" )\n",
"\n",
" print(\"API response:\")\n",
" #pprint(api_response)\n",
"\n",
" for p in api_response:\n",
" print(p)\n",
"\n",
" except ApiException as e:\n",
" print(\"Exception when calling post_sample_event:\")\n",
" print(f\"Status Code: {e.status}\")\n",
" if e.body:\n",
" print(f\"Error Details: {e.body}\")\n"
],
"id": "4a0665f92756b486",
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Payload being sent to API:\n",
"{\"event_type\":\"Mounted\"}\n",
"API response:\n",
"('id', 16)\n",
"('sample_name', 'Sample016')\n",
"('position', 16)\n",
"('puck_id', 1)\n",
"('crystalname', None)\n",
"('proteinname', None)\n",
"('positioninpuck', None)\n",
"('priority', None)\n",
"('comments', None)\n",
"('data_collection_parameters', None)\n",
"('events', [SampleEventResponse(id=399, sample_id=16, event_type='Mounted', timestamp=datetime.datetime(2025, 2, 26, 13, 5, 3))])\n",
"('mount_count', 1)\n",
"('unmount_count', 0)\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n",
" warnings.warn(\n"
]
}
],
"execution_count": 80
},
{
"metadata": {},
"cell_type": "code",
"outputs": [],
"execution_count": null,
"source": [
"### not working\n",
"with aareDBclient.ApiClient(configuration) as api_client:\n",
" # Create an instance of the Samples API class\n",
" api_instance = aareDBclient.SamplesApi(api_client)\n",
"\n",
" try:\n",
" # Get the last sample event\n",
" last_event_response = api_instance.get_last_sample_event_samples_samples_sample_id_events_last_get(27)\n",
" print(\"The response of get_last_sample_event:\\n\")\n",
" pprint(last_event_response)\n",
"\n",
" except ApiException as e:\n",
" print(\"Exception when calling get_last_sample_event: %s\\n\" % e)\n"
],
"id": "f1d171700d6cf7fe"
},
{
"metadata": {
"ExecuteTime": {
"end_time": "2025-02-26T13:17:13.591355Z",
"start_time": "2025-02-26T13:17:13.561947Z"
}
},
"cell_type": "code",
"source": [
"import os\n",
"import mimetypes\n",
"import requests\n",
"\n",
"# File path to the image\n",
"file_path = \"backend/tests/sample_image/IMG_1942.jpg\"\n",
"filename = os.path.basename(file_path)\n",
"mime_type, _ = mimetypes.guess_type(file_path)\n",
"if mime_type is None:\n",
" mime_type = \"application/octet-stream\"\n",
"\n",
"# Sample ID (ensure this exists on your backend)\n",
"sample_id = 16\n",
"\n",
"# Build the URL for the upload endpoint.\n",
"url = f\"https://127.0.0.1:8000/samples/{sample_id}/upload-images\"\n",
"\n",
"# Open the file and construct the files dictionary\n",
"with open(file_path, \"rb\") as file_data:\n",
" files = {\n",
" # Use key \"uploaded_file\" as required by your API\n",
" \"uploaded_file\": (filename, file_data, mime_type)\n",
" }\n",
" headers = {\n",
" \"accept\": \"application/json\"\n",
" }\n",
"\n",
" # Set verify=False to bypass certificate verification (only use in development)\n",
" response = requests.post(url, headers=headers, files=files, verify=False)\n",
"\n",
"# Check the API response\n",
"print(\"API Response:\")\n",
"print(response.status_code)\n",
"try:\n",
" print(response.json())\n",
"except Exception:\n",
" print(response.text)\n"
],
"id": "11f62976d2e7d9b1",
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"API Response:\n",
"200\n",
"{'pgroup': 'p20001', 'sample_id': 16, 'filepath': 'images/p20001/2025-02-26/Dewar One/PUCK-001/16/IMG_1942.jpg', 'status': 'active', 'comment': None, 'id': 3}\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n",
" warnings.warn(\n"
]
}
],
"execution_count": 88
},
{
"metadata": {},
"cell_type": "code",
"outputs": [],
"execution_count": null,
"source": "help(api_instance.upload_sample_images_samples_samples_sample_id_upload_images_post)",
"id": "cb1b99e6327fff84"
}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 2
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython2",
"version": "2.7.6"
}
},
"nbformat": 4,
"nbformat_minor": 5
}
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