{ "cells": [ { "metadata": { "ExecuteTime": { "end_time": "2025-02-26T13:09:58.719218Z", "start_time": "2025-02-26T13:09:58.716771Z" } }, "cell_type": "code", "source": [ "import json\n", "\n", "#from nbclient.client import timestamp\n", "\n", "import backend.aareDBclient as aareDBclient\n", "from aareDBclient.rest import ApiException\n", "from pprint import pprint\n", "\n", "#from app.data.data import sample\n", "\n", "#from aareDBclient import SamplesApi, ShipmentsApi, PucksApi\n", "#from aareDBclient.models import SampleEventCreate, SetTellPosition\n", "#from examples.examples import api_response\n", "\n", "print(aareDBclient.__version__)\n", "\n", "configuration = aareDBclient.Configuration(\n", " #host = \"https://mx-aare-test.psi.ch:1492\"\n", " host = \"https://127.0.0.1:8000\"\n", ")\n", "\n", "print(configuration.host)\n", "\n", "configuration.verify_ssl = False # Disable SSL verification\n", "#print(dir(SamplesApi))" ], "id": "3b7c27697a4d5c83", "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "0.1.0a21\n", "https://127.0.0.1:8000\n" ] } ], "execution_count": 86 }, { "metadata": {}, "cell_type": "code", "outputs": [], "execution_count": null, "source": [ "## Fetch all Shipments, list corresponding dewars and pucks\n", "\n", "from datetime import date, datetime\n", "from aareDBclient import ShipmentsApi\n", "from aareDBclient.models import Shipment\n", "\n", "with aareDBclient.ApiClient(configuration) as api_client:\n", " api_instance = aareDBclient.ShipmentsApi(api_client)\n", "\n", " try:\n", " # Fetch all shipments\n", " all_shipments_response = api_instance.fetch_shipments_shipments_get()\n", "\n", " # Print shipment names and their associated puck names\n", " for shipment in all_shipments_response:\n", " print(f\"Shipment ID: {shipment.id}, Shipment Name: {shipment.shipment_name}\")\n", " if hasattr(shipment, 'dewars') and shipment.dewars: # Ensure 'dewars' exists\n", " for dewar in shipment.dewars:\n", " print(f\" Dewar ID: {dewar.id}, Dewar Name: {dewar.dewar_name}, Dewar Unique ID: {dewar.unique_id} \")\n", "\n", " if hasattr(dewar, 'pucks') and dewar.pucks: # Ensure 'pucks' exists\n", " for puck in dewar.pucks:\n", " print(f\" Puck ID: {puck.id}, Puck Name: {puck.puck_name}\")\n", " else:\n", " print(\" No pucks found in this dewar.\")\n", " else:\n", " print(\" No dewars found in this shipment.\")\n", "\n", " except ApiException as e:\n", " print(f\"Exception when calling ShipmentsApi->fetch_shipments_shipments_get: {e}\")\n" ], "id": "4955b858f2cef93e" }, { "metadata": { "ExecuteTime": { "end_time": "2025-02-25T15:47:34.956061Z", "start_time": "2025-02-25T15:47:34.941372Z" } }, "cell_type": "code", "source": [ "from datetime import date\n", "from aareDBclient import LogisticsApi\n", "from aareDBclient.models import LogisticsEventCreate # Import required model\n", "\n", "with aareDBclient.ApiClient(configuration) as api_client:\n", " api_instance = aareDBclient.LogisticsApi(api_client)\n", "\n", " try:\n", " # Create payload using the required model\n", " logistics_event_create = LogisticsEventCreate(\n", " dewar_qr_code='923db239427869be',\n", " location_qr_code='A2-X06SA',\n", " transaction_type='incoming',\n", " timestamp=date.today() # Adjust if the API expects datetime\n", " )\n", "\n", " # Pass the payload to the API function\n", " api_response = api_instance.scan_dewar_logistics_dewar_scan_post(\n", " logistics_event_create=logistics_event_create # Pass as an object\n", " )\n", " print(\"API Response:\", api_response)\n", "\n", " except ApiException as e:\n", " print(f\"Exception when calling LogisticsApi->scan_dewar_logistics_dewar_scan_post: {e}\")\n", "\n", " try:\n", " # Create payload using the required model\n", " logistics_event_create = LogisticsEventCreate(\n", " dewar_qr_code='923db239427869be',\n", " location_qr_code='A2-X06SA',\n", " transaction_type='refill',\n", " timestamp=date.today() # Adjust if the API expects datetime\n", " )\n", "\n", " # Pass the payload to the API function\n", " api_response = api_instance.scan_dewar_logistics_dewar_scan_post(\n", " logistics_event_create=logistics_event_create # Pass as an object\n", " )\n", " print(\"API Response:\", api_response)\n", "\n", " except ApiException as e:\n", " print(f\"Exception when calling LogisticsApi->scan_dewar_logistics_dewar_scan_post: {e}\")\n", "\n", " try:\n", " # Create payload using the required model\n", " logistics_event_create = LogisticsEventCreate(\n", " dewar_qr_code='923db239427869be',\n", " location_qr_code='X06DA-Beamline',\n", " transaction_type='beamline',\n", " timestamp=date.today() # Adjust if the API expects datetime\n", " )\n", "\n", " # Pass the payload to the API function\n", " api_response = api_instance.scan_dewar_logistics_dewar_scan_post(\n", " logistics_event_create=logistics_event_create # Pass as an object\n", " )\n", " print(\"API Response:\", api_response)\n", "\n", " except ApiException as e:\n", " print(f\"Exception when calling LogisticsApi->scan_dewar_logistics_dewar_scan_post: {e}\")\n" ], "id": "8fd3638bffaecd23", "outputs": [ { "ename": "TypeError", "evalue": "ApiClient.call_api() got an unexpected keyword argument 'path_params'", "output_type": "error", "traceback": [ "\u001B[0;31m---------------------------------------------------------------------------\u001B[0m", "\u001B[0;31mTypeError\u001B[0m Traceback (most recent call last)", "Cell \u001B[0;32mIn[43], line 19\u001B[0m\n\u001B[1;32m 15\u001B[0m \u001B[38;5;28;01mtry\u001B[39;00m:\n\u001B[1;32m 16\u001B[0m \u001B[38;5;28;01mwith\u001B[39;00m \u001B[38;5;28mopen\u001B[39m(file_path, \u001B[38;5;124m\"\u001B[39m\u001B[38;5;124mrb\u001B[39m\u001B[38;5;124m\"\u001B[39m) \u001B[38;5;28;01mas\u001B[39;00m file_data:\n\u001B[1;32m 17\u001B[0m \u001B[38;5;66;03m# Use the low-level call_api method; note that the files parameter here is\u001B[39;00m\n\u001B[1;32m 18\u001B[0m \u001B[38;5;66;03m# a dictionary with key matching the FastAPI parameter name.\u001B[39;00m\n\u001B[0;32m---> 19\u001B[0m response \u001B[38;5;241m=\u001B[39m \u001B[43mapi_client\u001B[49m\u001B[38;5;241;43m.\u001B[39;49m\u001B[43mcall_api\u001B[49m\u001B[43m(\u001B[49m\n\u001B[1;32m 20\u001B[0m \u001B[43m \u001B[49m\u001B[38;5;124;43mf\u001B[39;49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[38;5;124;43m/\u001B[39;49m\u001B[38;5;132;43;01m{\u001B[39;49;00m\u001B[43msample_id\u001B[49m\u001B[38;5;132;43;01m}\u001B[39;49;00m\u001B[38;5;124;43m/upload_images\u001B[39;49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[43m,\u001B[49m\n\u001B[1;32m 21\u001B[0m \u001B[43m \u001B[49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[38;5;124;43mPOST\u001B[39;49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[43m,\u001B[49m\n\u001B[1;32m 22\u001B[0m \u001B[43m \u001B[49m\u001B[43mpath_params\u001B[49m\u001B[38;5;241;43m=\u001B[39;49m\u001B[43m{\u001B[49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[38;5;124;43msample_id\u001B[39;49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[43m:\u001B[49m\u001B[43m \u001B[49m\u001B[43msample_id\u001B[49m\u001B[43m}\u001B[49m\u001B[43m,\u001B[49m\n\u001B[1;32m 23\u001B[0m \u001B[43m \u001B[49m\u001B[43mfiles\u001B[49m\u001B[38;5;241;43m=\u001B[39;49m\u001B[43m{\u001B[49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[38;5;124;43muploaded_file\u001B[39;49m\u001B[38;5;124;43m\"\u001B[39;49m\u001B[43m:\u001B[49m\u001B[43m \u001B[49m\u001B[43m(\u001B[49m\u001B[43mfilename\u001B[49m\u001B[43m,\u001B[49m\u001B[43m \u001B[49m\u001B[43mfile_data\u001B[49m\u001B[43m,\u001B[49m\u001B[43m \u001B[49m\u001B[43mmime_type\u001B[49m\u001B[43m)\u001B[49m\u001B[43m}\u001B[49m\n\u001B[1;32m 24\u001B[0m \u001B[43m \u001B[49m\u001B[43m)\u001B[49m\n\u001B[1;32m 25\u001B[0m \u001B[38;5;28mprint\u001B[39m(\u001B[38;5;124m\"\u001B[39m\u001B[38;5;124mAPI Response:\u001B[39m\u001B[38;5;124m\"\u001B[39m)\n\u001B[1;32m 26\u001B[0m \u001B[38;5;28mprint\u001B[39m(response)\n", "\u001B[0;31mTypeError\u001B[0m: ApiClient.call_api() got an unexpected keyword argument 'path_params'" ] } ], "execution_count": 43 }, { "metadata": { "ExecuteTime": { "end_time": "2025-02-26T12:04:05.046079Z", "start_time": "2025-02-26T12:04:04.954761Z" } }, "cell_type": "code", "source": [ "# Get a list of pucks that are \"at the beamline\"\n", "\n", "with aareDBclient.ApiClient(configuration) as api_client:\n", " # Create an instance of the API class\n", " api_instance = aareDBclient.PucksApi(api_client)\n", " get_pucks_at_beamline = aareDBclient.PucksApi(api_client)\n", "\n", " try:\n", " # Create Return Address\n", " api_response = api_instance.get_pucks_by_slot_pucks_slot_slot_identifier_get(slot_identifier='X06DA')\n", " print(\"The response of PucksApi->get_pucks_by_slot_pucks_slot_slot_identifier_get:\\n\")\n", " pprint(api_response)\n", "\n", " except ApiException as e:\n", " print(\"Exception when calling PucksApi->get_pucks_by_slot_pucks_slot_slot_identifier_get: %s\\n\" % e)" ], "id": "9cf3457093751b61", "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The response of PucksApi->get_pucks_by_slot_pucks_slot_slot_identifier_get:\n", "\n", "[PuckWithTellPosition(id=1, puck_name='PUCK-001', puck_type='Unipuck', puck_location_in_dewar=1, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n", " PuckWithTellPosition(id=2, puck_name='PUCK002', puck_type='Unipuck', puck_location_in_dewar=2, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n", " PuckWithTellPosition(id=3, puck_name='PUCK003', puck_type='Unipuck', puck_location_in_dewar=3, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n", " PuckWithTellPosition(id=4, puck_name='PUCK004', puck_type='Unipuck', puck_location_in_dewar=4, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n", " PuckWithTellPosition(id=5, puck_name='PUCK005', puck_type='Unipuck', puck_location_in_dewar=5, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n", " PuckWithTellPosition(id=6, puck_name='PUCK006', puck_type='Unipuck', puck_location_in_dewar=6, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n", " PuckWithTellPosition(id=7, puck_name='PUCK007', puck_type='Unipuck', puck_location_in_dewar=7, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None)]\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n", " warnings.warn(\n" ] } ], "execution_count": 77 }, { "metadata": { "ExecuteTime": { "end_time": "2025-02-26T12:04:33.644201Z", "start_time": "2025-02-26T12:04:33.625894Z" } }, "cell_type": "code", "source": [ "from aareDBclient import SetTellPosition, SetTellPositionRequest\n", "\n", "with aareDBclient.ApiClient(configuration) as api_client:\n", " # Create an instance of the API class\n", " api_instance = aareDBclient.PucksApi(api_client)\n", "\n", " # Payload with SetTellPosition objects\n", " payload = SetTellPositionRequest(\n", " tell=\"X06DA\",\n", " #pucks=[\n", " # SetTellPosition(puck_name='PSIMX074', segment='B', puck_in_segment=1),\n", " # SetTellPosition(puck_name='PSIMX080', segment='B', puck_in_segment=2),\n", " # SetTellPosition(puck_name='PSIMX081', segment='C', puck_in_segment=3),\n", " # SetTellPosition(puck_name='PSIMX084', segment='C', puck_in_segment=4),\n", " # SetTellPosition(puck_name='PSIMX104', segment='E', puck_in_segment=5),\n", " # SetTellPosition(puck_name='PSIMX107', segment='E', puck_in_segment=1),\n", " # SetTellPosition(puck_name='PSIMX117', segment='F', puck_in_segment=2),\n", " #]\n", " #pucks=[\n", " # SetTellPosition(puck_name='PSIMX074', segment='F', puck_in_segment=1),\n", " # SetTellPosition(puck_name='PSIMX080', segment='F', puck_in_segment=2),\n", " # SetTellPosition(puck_name='PSIMX107', segment='A', puck_in_segment=1),\n", " # SetTellPosition(puck_name='PSIMX117', segment='A', puck_in_segment=2),\n", " #]\n", " pucks=[\n", " SetTellPosition(puck_name='PUCK006', segment='F', puck_in_segment=1),\n", " SetTellPosition(puck_name='PUCK003', segment='F', puck_in_segment=2),\n", " SetTellPosition(puck_name='PUCK002', segment='A', puck_in_segment=1),\n", " SetTellPosition(puck_name='PUCK001', segment='A', puck_in_segment=2),\n", " ]\n", " #pucks = []\n", " )\n", "\n", " # Call the PUT method to update the tell_position\n", " try:\n", " api_response = api_instance.set_tell_positions_pucks_set_tell_positions_put(\n", " set_tell_position_request=payload\n", " ) # Pass the entire payload as a single parameter\n", "\n", " print(\"The response of PucksApi->pucks_puck_id_tell_position_put:\\n\")\n", " pprint(api_response)\n", "\n", " except Exception as e:\n", " print(f\"Exception when calling PucksApi: {e}\")\n" ], "id": "37e3eac6760150ee", "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The response of PucksApi->pucks_puck_id_tell_position_put:\n", "\n", "[{'message': 'Tell position updated successfully.',\n", " 'new_position': 'F1',\n", " 'previous_position': None,\n", " 'puck_name': 'PUCK006',\n", " 'status': 'updated',\n", " 'tell': 'X06DA'},\n", " {'message': 'Tell position updated successfully.',\n", " 'new_position': 'F2',\n", " 'previous_position': None,\n", " 'puck_name': 'PUCK003',\n", " 'status': 'updated',\n", " 'tell': 'X06DA'},\n", " {'message': 'Tell position updated successfully.',\n", " 'new_position': 'A1',\n", " 'previous_position': None,\n", " 'puck_name': 'PUCK002',\n", " 'status': 'updated',\n", " 'tell': 'X06DA'},\n", " {'message': 'Tell position updated successfully.',\n", " 'new_position': 'A2',\n", " 'previous_position': None,\n", " 'puck_name': 'PUCK001',\n", " 'status': 'updated',\n", " 'tell': 'X06DA'}]\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n", " warnings.warn(\n" ] } ], "execution_count": 78 }, { "metadata": { "ExecuteTime": { "end_time": "2025-02-26T12:04:41.352140Z", "start_time": "2025-02-26T12:04:41.331320Z" } }, "cell_type": "code", "source": [ "# Get puck_id puck_name sample_id sample_name of pucks in the tell\n", "\n", "with aareDBclient.ApiClient(configuration) as api_client:\n", " # Create an instance of the API class\n", " api_instance = aareDBclient.PucksApi(api_client)\n", "\n", " # GET request: Fetch all pucks in the tell\n", " try:\n", " # Call the API method to fetch pucks\n", " all_pucks_response = api_instance.get_pucks_with_tell_position_pucks_with_tell_position_get(tell='X06DA')\n", "\n", " # Debug response structure by printing it in JSON format\n", " formatted_response = json.dumps(\n", " [p.to_dict() for p in all_pucks_response], # Assuming the API response can be converted to dicts\n", " indent=4 # Use indentation for readability\n", " )\n", " #print(\"The response of PucksApi->get_all_pucks_in_tell (formatted):\\n\")\n", " #print(formatted_response)\n", "\n", " # Iterate through each puck and print information\n", " for p in all_pucks_response:\n", " print(f\"Puck ID: {p.id}, Puck Name: {p.puck_name}\")\n", "\n", " ## Check if the puck has any samples\n", " if hasattr(p, 'samples') and p.samples: # Ensure 'samples' attribute exists and is not empty\n", " for sample in p.samples:\n", " print(f\" Sample ID: {sample.id}, Sample Name: {sample.sample_name}, Position: {sample.position}, Mount count: {sample.mount_count}\")\n", " else:\n", " print(\" No samples found in this puck.\")\n", "\n", " except ApiException as e:\n", " print(\"Exception when calling PucksApi->get_all_pucks_in_tell: %s\\n\" % e)" ], "id": "51578d944878db6a", "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Puck ID: 6, Puck Name: PUCK006\n", " Sample ID: 44, Sample Name: Sample044, Position: 2, Mount count: 1\n", " Sample ID: 45, Sample Name: Sample045, Position: 3, Mount count: 0\n", " Sample ID: 46, Sample Name: Sample046, Position: 4, Mount count: 0\n", " Sample ID: 47, Sample Name: Sample047, Position: 5, Mount count: 1\n", "Puck ID: 3, Puck Name: PUCK003\n", " Sample ID: 24, Sample Name: Sample024, Position: 1, Mount count: 0\n", " Sample ID: 25, Sample Name: Sample025, Position: 5, Mount count: 1\n", " Sample ID: 26, Sample Name: Sample026, Position: 8, Mount count: 1\n", " Sample ID: 27, Sample Name: Sample027, Position: 11, Mount count: 1\n", " Sample ID: 28, Sample Name: Sample028, Position: 12, Mount count: 1\n", "Puck ID: 2, Puck Name: PUCK002\n", " Sample ID: 17, Sample Name: Sample017, Position: 4, Mount count: 1\n", " Sample ID: 18, Sample Name: Sample018, Position: 5, Mount count: 0\n", " Sample ID: 19, Sample Name: Sample019, Position: 7, Mount count: 1\n", " Sample ID: 20, Sample Name: Sample020, Position: 10, Mount count: 0\n", " Sample ID: 21, Sample Name: Sample021, Position: 11, Mount count: 1\n", " Sample ID: 22, Sample Name: Sample022, Position: 13, Mount count: 0\n", " Sample ID: 23, Sample Name: Sample023, Position: 16, Mount count: 1\n", "Puck ID: 1, Puck Name: PUCK-001\n", " Sample ID: 1, Sample Name: Sample001, Position: 1, Mount count: 1\n", " Sample ID: 2, Sample Name: Sample002, Position: 2, Mount count: 1\n", " Sample ID: 3, Sample Name: Sample003, Position: 3, Mount count: 0\n", " Sample ID: 4, Sample Name: Sample004, Position: 4, Mount count: 0\n", " Sample ID: 5, Sample Name: Sample005, Position: 5, Mount count: 0\n", " Sample ID: 6, Sample Name: Sample006, Position: 6, Mount count: 1\n", " Sample ID: 7, Sample Name: Sample007, Position: 7, Mount count: 0\n", " Sample ID: 8, Sample Name: Sample008, Position: 8, Mount count: 1\n", " Sample ID: 9, Sample Name: Sample009, Position: 9, Mount count: 1\n", " Sample ID: 10, Sample Name: Sample010, Position: 10, Mount count: 1\n", " Sample ID: 11, Sample Name: Sample011, Position: 11, Mount count: 1\n", " Sample ID: 12, Sample Name: Sample012, Position: 12, Mount count: 1\n", " Sample ID: 13, Sample Name: Sample013, Position: 13, Mount count: 0\n", " Sample ID: 14, Sample Name: Sample014, Position: 14, Mount count: 1\n", " Sample ID: 15, Sample Name: Sample015, Position: 15, Mount count: 0\n", " Sample ID: 16, Sample Name: Sample016, Position: 16, Mount count: 0\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n", " warnings.warn(\n" ] } ], "execution_count": 79 }, { "metadata": { "ExecuteTime": { "end_time": "2025-02-26T12:05:03.257159Z", "start_time": "2025-02-26T12:05:03.232846Z" } }, "cell_type": "code", "source": [ "from aareDBclient import SampleEventCreate\n", "\n", "# Create an event for a sample\n", "\n", "with aareDBclient.ApiClient(configuration) as api_client:\n", " # Instance of the API client\n", " api_instance = aareDBclient.SamplesApi(api_client)\n", "\n", " try:\n", " # Define the payload with only `event_type`\n", " sample_event_create = SampleEventCreate(\n", " sample_id=16,\n", " event_type=\"Mounted\" # Valid event type\n", " )\n", "\n", " # Debug the payload before sending\n", " print(\"Payload being sent to API:\")\n", " print(sample_event_create.json()) # Ensure it matches `SampleEventCreate`\n", "\n", " # Call the API\n", " api_response = api_instance.create_sample_event_samples_samples_sample_id_events_post(\n", " sample_id=16, # Ensure this matches a valid sample ID in the database\n", " sample_event_create=sample_event_create\n", " )\n", "\n", " print(\"API response:\")\n", " #pprint(api_response)\n", "\n", " for p in api_response:\n", " print(p)\n", "\n", " except ApiException as e:\n", " print(\"Exception when calling post_sample_event:\")\n", " print(f\"Status Code: {e.status}\")\n", " if e.body:\n", " print(f\"Error Details: {e.body}\")\n" ], "id": "4a0665f92756b486", "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Payload being sent to API:\n", "{\"event_type\":\"Mounted\"}\n", "API response:\n", "('id', 16)\n", "('sample_name', 'Sample016')\n", "('position', 16)\n", "('puck_id', 1)\n", "('crystalname', None)\n", "('proteinname', None)\n", "('positioninpuck', None)\n", "('priority', None)\n", "('comments', None)\n", "('data_collection_parameters', None)\n", "('events', [SampleEventResponse(id=399, sample_id=16, event_type='Mounted', timestamp=datetime.datetime(2025, 2, 26, 13, 5, 3))])\n", "('mount_count', 1)\n", "('unmount_count', 0)\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n", " warnings.warn(\n" ] } ], "execution_count": 80 }, { "metadata": {}, "cell_type": "code", "outputs": [], "execution_count": null, "source": [ "### not working\n", "with aareDBclient.ApiClient(configuration) as api_client:\n", " # Create an instance of the Samples API class\n", " api_instance = aareDBclient.SamplesApi(api_client)\n", "\n", " try:\n", " # Get the last sample event\n", " last_event_response = api_instance.get_last_sample_event_samples_samples_sample_id_events_last_get(27)\n", " print(\"The response of get_last_sample_event:\\n\")\n", " pprint(last_event_response)\n", "\n", " except ApiException as e:\n", " print(\"Exception when calling get_last_sample_event: %s\\n\" % e)\n" ], "id": "f1d171700d6cf7fe" }, { "metadata": { "ExecuteTime": { "end_time": "2025-02-26T16:15:33.052345Z", "start_time": "2025-02-26T16:15:33.022632Z" } }, "cell_type": "code", "source": [ "import os\n", "import mimetypes\n", "import requests\n", "\n", "# File path to the image\n", "file_path = \"backend/tests/sample_image/IMG_1942.jpg\"\n", "filename = os.path.basename(file_path)\n", "mime_type, _ = mimetypes.guess_type(file_path)\n", "if mime_type is None:\n", " mime_type = \"application/octet-stream\"\n", "\n", "# Sample ID (ensure this exists on your backend)\n", "sample_id = 16\n", "\n", "# Build the URL for the upload endpoint.\n", "url = f\"https://127.0.0.1:8000/samples/{sample_id}/upload-images\"\n", "\n", "# Open the file and construct the files dictionary\n", "with open(file_path, \"rb\") as file_data:\n", " files = {\n", " # Use key \"uploaded_file\" as required by your API\n", " \"uploaded_file\": (filename, file_data, mime_type)\n", " }\n", " headers = {\n", " \"accept\": \"application/json\"\n", " }\n", " comment = \"before loop centering\"\n", "\n", " # Set verify=False to bypass certificate verification (only use in development)\n", " response = requests.post(url, headers=headers, files=files, verify=False)\n", "\n", "# Check the API response\n", "print(\"API Response:\")\n", "print(response.status_code)\n", "try:\n", " print(response.json())\n", "except Exception:\n", " print(response.text)\n" ], "id": "11f62976d2e7d9b1", "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "API Response:\n", "200\n", "{'pgroup': 'p20001', 'sample_id': 16, 'filepath': 'images/p20001/2025-02-26/Dewar One/PUCK-001/16/IMG_1942.jpg', 'status': 'active', 'comment': None, 'id': 4}\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n", " warnings.warn(\n" ] } ], "execution_count": 89 }, { "metadata": {}, "cell_type": "code", "outputs": [], "execution_count": null, "source": "help(api_instance.upload_sample_images_samples_samples_sample_id_upload_images_post)", "id": "cb1b99e6327fff84" } ], "metadata": { "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 2 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython2", "version": "2.7.6" } }, "nbformat": 4, "nbformat_minor": 5 }