{ "cells": [ { "cell_type": "code", "id": "initial_id", "metadata": { "collapsed": true, "ExecuteTime": { "end_time": "2025-02-04T12:17:43.144287Z", "start_time": "2025-02-04T12:17:43.141596Z" } }, "source": [ "import json\n", "\n", "#from nbclient.client import timestamp\n", "\n", "import backend.aareDBclient as aareDBclient\n", "from aareDBclient.rest import ApiException\n", "from pprint import pprint\n", "\n", "#from app.data.data import sample\n", "\n", "#from aareDBclient import SamplesApi, ShipmentsApi, PucksApi\n", "#from aareDBclient.models import SampleEventCreate, SetTellPosition\n", "#from examples.examples import api_response\n", "\n", "print(aareDBclient.__version__)\n", "\n", "configuration = aareDBclient.Configuration(\n", " #host = \"https://mx-aare-test.psi.ch:1492\"\n", " host = \"https://127.0.0.1:8000\"\n", ")\n", "\n", "print(configuration.host)\n", "\n", "configuration.verify_ssl = False # Disable SSL verification\n", "#print(dir(SamplesApi))" ], "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "0.1.0a20\n", "https://127.0.0.1:8000\n" ] } ], "execution_count": 22 }, { "metadata": { "ExecuteTime": { "end_time": "2025-02-03T08:48:55.604554Z", "start_time": "2025-02-03T08:48:55.583427Z" } }, "cell_type": "code", "source": [ "## Fetch all Shipments, list corresponding dewars and pucks\n", "\n", "from datetime import date, datetime\n", "from aareDBclient import ShipmentsApi\n", "from aareDBclient.models import Shipment\n", "\n", "with aareDBclient.ApiClient(configuration) as api_client:\n", " api_instance = aareDBclient.ShipmentsApi(api_client)\n", "\n", " try:\n", " # Fetch all shipments\n", " all_shipments_response = api_instance.fetch_shipments_shipments_get()\n", "\n", " # Print shipment names and their associated puck names\n", " for shipment in all_shipments_response:\n", " print(f\"Shipment ID: {shipment.id}, Shipment Name: {shipment.shipment_name}\")\n", " if hasattr(shipment, 'dewars') and shipment.dewars: # Ensure 'dewars' exists\n", " for dewar in shipment.dewars:\n", " print(f\" Dewar ID: {dewar.id}, Dewar Name: {dewar.dewar_name}, Dewar Unique ID: {dewar.unique_id} \")\n", "\n", " if hasattr(dewar, 'pucks') and dewar.pucks: # Ensure 'pucks' exists\n", " for puck in dewar.pucks:\n", " print(f\" Puck ID: {puck.id}, Puck Name: {puck.puck_name}\")\n", " else:\n", " print(\" No pucks found in this dewar.\")\n", " else:\n", " print(\" No dewars found in this shipment.\")\n", "\n", " except ApiException as e:\n", " print(f\"Exception when calling ShipmentsApi->fetch_shipments_shipments_get: {e}\")\n" ], "id": "45cc7ab6d4589711", "outputs": [ { "ename": "AttributeError", "evalue": "'ShipmentsApi' object has no attribute 'fetch_shipments_shipments_get'", "output_type": "error", "traceback": [ "\u001B[0;31m---------------------------------------------------------------------------\u001B[0m", "\u001B[0;31mAttributeError\u001B[0m Traceback (most recent call last)", "Cell \u001B[0;32mIn[3], line 12\u001B[0m\n\u001B[1;32m 8\u001B[0m api_instance \u001B[38;5;241m=\u001B[39m aareDBclient\u001B[38;5;241m.\u001B[39mShipmentsApi(api_client)\n\u001B[1;32m 10\u001B[0m \u001B[38;5;28;01mtry\u001B[39;00m:\n\u001B[1;32m 11\u001B[0m \u001B[38;5;66;03m# Fetch all shipments\u001B[39;00m\n\u001B[0;32m---> 12\u001B[0m all_shipments_response \u001B[38;5;241m=\u001B[39m \u001B[43mapi_instance\u001B[49m\u001B[38;5;241;43m.\u001B[39;49m\u001B[43mfetch_shipments_shipments_get\u001B[49m()\n\u001B[1;32m 14\u001B[0m \u001B[38;5;66;03m# Print shipment names and their associated puck names\u001B[39;00m\n\u001B[1;32m 15\u001B[0m \u001B[38;5;28;01mfor\u001B[39;00m shipment \u001B[38;5;129;01min\u001B[39;00m all_shipments_response:\n", "\u001B[0;31mAttributeError\u001B[0m: 'ShipmentsApi' object has no attribute 'fetch_shipments_shipments_get'" ] } ], "execution_count": 3 }, { "metadata": { "ExecuteTime": { "end_time": "2025-02-03T22:26:47.957072Z", "start_time": "2025-02-03T22:26:47.935362Z" } }, "cell_type": "code", "source": [ "from datetime import date\n", "from aareDBclient import LogisticsApi\n", "from aareDBclient.models import LogisticsEventCreate # Import required model\n", "\n", "with aareDBclient.ApiClient(configuration) as api_client:\n", " api_instance = aareDBclient.LogisticsApi(api_client)\n", "\n", " try:\n", " # Create payload using the required model\n", " logistics_event_create = LogisticsEventCreate(\n", " dewar_qr_code='923db239427869be',\n", " location_qr_code='A2-X06SA',\n", " transaction_type='incoming',\n", " timestamp=date.today() # Adjust if the API expects datetime\n", " )\n", "\n", " # Pass the payload to the API function\n", " api_response = api_instance.scan_dewar_logistics_dewar_scan_post(\n", " logistics_event_create=logistics_event_create # Pass as an object\n", " )\n", " print(\"API Response:\", api_response)\n", "\n", " except ApiException as e:\n", " print(f\"Exception when calling LogisticsApi->scan_dewar_logistics_dewar_scan_post: {e}\")\n", "\n", " try:\n", " # Create payload using the required model\n", " logistics_event_create = LogisticsEventCreate(\n", " dewar_qr_code='923db239427869be',\n", " location_qr_code='A2-X06SA',\n", " transaction_type='refill',\n", " timestamp=date.today() # Adjust if the API expects datetime\n", " )\n", "\n", " # Pass the payload to the API function\n", " api_response = api_instance.scan_dewar_logistics_dewar_scan_post(\n", " logistics_event_create=logistics_event_create # Pass as an object\n", " )\n", " print(\"API Response:\", api_response)\n", "\n", " except ApiException as e:\n", " print(f\"Exception when calling LogisticsApi->scan_dewar_logistics_dewar_scan_post: {e}\")\n", "\n", " try:\n", " # Create payload using the required model\n", " logistics_event_create = LogisticsEventCreate(\n", " dewar_qr_code='923db239427869be',\n", " location_qr_code='X06DA-Beamline',\n", " transaction_type='beamline',\n", " timestamp=date.today() # Adjust if the API expects datetime\n", " )\n", "\n", " # Pass the payload to the API function\n", " api_response = api_instance.scan_dewar_logistics_dewar_scan_post(\n", " logistics_event_create=logistics_event_create # Pass as an object\n", " )\n", " print(\"API Response:\", api_response)\n", "\n", " except ApiException as e:\n", " print(f\"Exception when calling LogisticsApi->scan_dewar_logistics_dewar_scan_post: {e}\")\n" ], "id": "f5de1787214a6642", "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Exception when calling LogisticsApi->scan_dewar_logistics_dewar_scan_post: (400)\n", "Reason: Bad Request\n", "HTTP response headers: HTTPHeaderDict({'date': 'Mon, 03 Feb 2025 22:26:47 GMT', 'server': 'uvicorn', 'content-length': '47', 'content-type': 'application/json'})\n", "HTTP response body: {\"detail\":\"Slot not found or already occupied\"}\n", "\n", "API Response: {'message': 'Status updated successfully'}\n", "API Response: {'message': 'Status updated successfully'}\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n", " warnings.warn(\n", "/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n", " warnings.warn(\n", "/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n", " warnings.warn(\n" ] } ], "execution_count": 4 }, { "metadata": { "ExecuteTime": { "end_time": "2025-02-04T13:40:09.144335Z", "start_time": "2025-02-04T13:40:09.125904Z" } }, "cell_type": "code", "source": [ "# Get a list of pucks that are \"at the beamline\"\n", "\n", "with aareDBclient.ApiClient(configuration) as api_client:\n", " # Create an instance of the API class\n", " api_instance = aareDBclient.PucksApi(api_client)\n", " get_pucks_at_beamline = aareDBclient.PucksApi(api_client)\n", "\n", " try:\n", " # Create Return Address\n", " api_response = api_instance.get_pucks_by_slot_pucks_slot_slot_identifier_get(slot_identifier='X06DA')\n", " print(\"The response of PucksApi->get_pucks_by_slot_pucks_slot_slot_identifier_get:\\n\")\n", " pprint(api_response)\n", "\n", " except ApiException as e:\n", " print(\"Exception when calling PucksApi->get_pucks_by_slot_pucks_slot_slot_identifier_get: %s\\n\" % e)" ], "id": "bbee7c94bf14000c", "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The response of PucksApi->get_pucks_by_slot_pucks_slot_slot_identifier_get:\n", "\n", "[PuckWithTellPosition(id=38, puck_name='PSIMX074', puck_type='unipuck', puck_location_in_dewar=1, dewar_id=7, dewar_name='31012025', pgroup='p20001', samples=None, tell_position=None),\n", " PuckWithTellPosition(id=39, puck_name='PSIMX080', puck_type='unipuck', puck_location_in_dewar=2, dewar_id=7, dewar_name='31012025', pgroup='p20001', samples=None, tell_position=None),\n", " PuckWithTellPosition(id=40, puck_name='PSIMX081', puck_type='unipuck', puck_location_in_dewar=3, dewar_id=7, dewar_name='31012025', pgroup='p20001', samples=None, tell_position=None),\n", " PuckWithTellPosition(id=41, puck_name='PSIMX084', puck_type='unipuck', puck_location_in_dewar=4, dewar_id=7, dewar_name='31012025', pgroup='p20001', samples=None, tell_position=None),\n", " PuckWithTellPosition(id=42, puck_name='PSIMX104', puck_type='unipuck', puck_location_in_dewar=5, dewar_id=7, dewar_name='31012025', pgroup='p20001', samples=None, tell_position=None),\n", " PuckWithTellPosition(id=43, puck_name='PSIMX107', puck_type='unipuck', puck_location_in_dewar=6, dewar_id=7, dewar_name='31012025', pgroup='p20001', samples=None, tell_position=None),\n", " PuckWithTellPosition(id=44, puck_name='PSIMX117', puck_type='unipuck', puck_location_in_dewar=7, dewar_id=7, dewar_name='31012025', pgroup='p20001', samples=None, tell_position=None)]\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n", " warnings.warn(\n" ] } ], "execution_count": 52 }, { "metadata": { "ExecuteTime": { "end_time": "2025-02-04T13:40:49.933951Z", "start_time": "2025-02-04T13:40:49.910479Z" } }, "cell_type": "code", "source": [ "from aareDBclient import SetTellPosition, SetTellPositionRequest\n", "\n", "with aareDBclient.ApiClient(configuration) as api_client:\n", " # Create an instance of the API class\n", " api_instance = aareDBclient.PucksApi(api_client)\n", "\n", " # Payload with SetTellPosition objects\n", " payload = SetTellPositionRequest(\n", " tell=\"X06DA\",\n", " pucks=[\n", " SetTellPosition(puck_name='PSIMX074', segment='B', puck_in_segment=1),\n", " SetTellPosition(puck_name='PSIMX080', segment='B', puck_in_segment=2),\n", " SetTellPosition(puck_name='PSIMX081', segment='C', puck_in_segment=3),\n", " SetTellPosition(puck_name='PSIMX084', segment='C', puck_in_segment=4),\n", " SetTellPosition(puck_name='PSIMX104', segment='E', puck_in_segment=5),\n", " SetTellPosition(puck_name='PSIMX107', segment='E', puck_in_segment=1),\n", " SetTellPosition(puck_name='PSIMX117', segment='F', puck_in_segment=2),\n", " ]\n", " #pucks=[\n", " # SetTellPosition(puck_name='PSIMX074', segment='F', puck_in_segment=1),\n", " # SetTellPosition(puck_name='PSIMX080', segment='F', puck_in_segment=2),\n", " # SetTellPosition(puck_name='PSIMX081', segment='F', puck_in_segment=3),\n", " # SetTellPosition(puck_name='PSIMX084', segment='F', puck_in_segment=4),\n", " # SetTellPosition(puck_name='PSIMX107', segment='A', puck_in_segment=1),\n", " # SetTellPosition(puck_name='PSIMX117', segment='A', puck_in_segment=2),\n", " #]\n", " #pucks = []\n", " )\n", "\n", " # Call the PUT method to update the tell_position\n", " try:\n", " api_response = api_instance.set_tell_positions_pucks_set_tell_positions_put(\n", " set_tell_position_request=payload\n", " ) # Pass the entire payload as a single parameter\n", "\n", " print(\"The response of PucksApi->pucks_puck_id_tell_position_put:\\n\")\n", " pprint(api_response)\n", "\n", " except Exception as e:\n", " print(f\"Exception when calling PucksApi: {e}\")\n" ], "id": "d52d12287dd63299", "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The response of PucksApi->pucks_puck_id_tell_position_put:\n", "\n", "[{'message': 'Tell position updated successfully.',\n", " 'new_position': 'B1',\n", " 'previous_position': None,\n", " 'puck_name': 'PSIMX074',\n", " 'status': 'updated',\n", " 'tell': 'X06DA'},\n", " {'message': 'Tell position updated successfully.',\n", " 'new_position': 'B2',\n", " 'previous_position': None,\n", " 'puck_name': 'PSIMX080',\n", " 'status': 'updated',\n", " 'tell': 'X06DA'},\n", " {'message': 'Tell position updated successfully.',\n", " 'new_position': 'C3',\n", " 'previous_position': None,\n", " 'puck_name': 'PSIMX081',\n", " 'status': 'updated',\n", " 'tell': 'X06DA'},\n", " {'message': 'Tell position updated successfully.',\n", " 'new_position': 'C4',\n", " 'previous_position': None,\n", " 'puck_name': 'PSIMX084',\n", " 'status': 'updated',\n", " 'tell': 'X06DA'},\n", " {'message': 'Tell position updated successfully.',\n", " 'new_position': 'E5',\n", " 'previous_position': None,\n", " 'puck_name': 'PSIMX104',\n", " 'status': 'updated',\n", " 'tell': 'X06DA'},\n", " {'message': 'Tell position updated successfully.',\n", " 'new_position': 'E1',\n", " 'previous_position': None,\n", " 'puck_name': 'PSIMX107',\n", " 'status': 'updated',\n", " 'tell': 'X06DA'},\n", " {'message': 'Tell position updated successfully.',\n", " 'new_position': 'F2',\n", " 'previous_position': None,\n", " 'puck_name': 'PSIMX117',\n", " 'status': 'updated',\n", " 'tell': 'X06DA'}]\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n", " warnings.warn(\n" ] } ], "execution_count": 55 }, { "metadata": { "ExecuteTime": { "end_time": "2025-02-04T13:36:46.598976Z", "start_time": "2025-02-04T13:36:46.568865Z" } }, "cell_type": "code", "source": [ "# Get puck_id puck_name sample_id sample_name of pucks in the tell\n", "\n", "with aareDBclient.ApiClient(configuration) as api_client:\n", " # Create an instance of the API class\n", " api_instance = aareDBclient.PucksApi(api_client)\n", "\n", " # GET request: Fetch all pucks in the tell\n", " try:\n", " # Call the API method to fetch pucks\n", " all_pucks_response = api_instance.get_pucks_with_tell_position_pucks_with_tell_position_get()\n", "\n", " # Debug response structure by printing it in JSON format\n", " formatted_response = json.dumps(\n", " [p.to_dict() for p in all_pucks_response], # Assuming the API response can be converted to dicts\n", " indent=4 # Use indentation for readability\n", " )\n", " #print(\"The response of PucksApi->get_all_pucks_in_tell (formatted):\\n\")\n", " #print(formatted_response)\n", "\n", " # Iterate through each puck and print information\n", " for p in all_pucks_response:\n", " print(f\"Puck ID: {p.id}, Puck Name: {p.puck_name}\")\n", "\n", " # Check if the puck has any samples\n", " #if hasattr(p, 'samples') and p.samples: # Ensure 'samples' attribute exists and is not empty\n", " # for sample in p.samples:\n", " # print(f\" Sample ID: {sample.id}, Sample Name: {sample.sample_name}, Position: {sample.position}, Mount count: {sample.mount_count}\")\n", " #else:\n", " # print(\" No samples found in this puck.\")\n", "\n", " except ApiException as e:\n", " print(\"Exception when calling PucksApi->get_all_pucks_in_tell: %s\\n\" % e)" ], "id": "95f8c133359945d5", "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Puck ID: 31, Puck Name: PSIMX074\n", "Puck ID: 32, Puck Name: PSIMX080\n", "Puck ID: 33, Puck Name: PSIMX081\n", "Puck ID: 34, Puck Name: PSIMX084\n", "Puck ID: 36, Puck Name: PSIMX107\n", "Puck ID: 37, Puck Name: PSIMX117\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n", " warnings.warn(\n" ] } ], "execution_count": 49 }, { "metadata": { "ExecuteTime": { "end_time": "2025-01-31T13:46:18.354067Z", "start_time": "2025-01-31T13:46:18.332891Z" } }, "cell_type": "code", "source": [ "from aareDBclient import SampleEventCreate\n", "\n", "# Create an event for a sample\n", "\n", "with aareDBclient.ApiClient(configuration) as api_client:\n", " # Instance of the API client\n", " api_instance = aareDBclient.SamplesApi(api_client)\n", "\n", " try:\n", " # Define the payload with only `event_type`\n", " sample_event_create = SampleEventCreate(\n", " sample_id=28,\n", " event_type=\"Mounted\" # Valid event type\n", " )\n", "\n", " # Debug the payload before sending\n", " print(\"Payload being sent to API:\")\n", " print(sample_event_create.json()) # Ensure it matches `SampleEventCreate`\n", "\n", " # Call the API\n", " api_response = api_instance.create_sample_event_samples_samples_sample_id_events_post(\n", " sample_id=28, # Ensure this matches a valid sample ID in the database\n", " sample_event_create=sample_event_create\n", " )\n", "\n", " print(\"API response:\")\n", " #pprint(api_response)\n", "\n", " for p in api_response:\n", " print(p)\n", "\n", " except ApiException as e:\n", " print(\"Exception when calling post_sample_event:\")\n", " print(f\"Status Code: {e.status}\")\n", " if e.body:\n", " print(f\"Error Details: {e.body}\")\n" ], "id": "ee8abb293096334a", "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Payload being sent to API:\n", "{\"event_type\":\"Mounted\"}\n", "API response:\n", "('id', 28)\n", "('sample_name', 'Sample028')\n", "('position', 1)\n", "('puck_id', 6)\n", "('crystalname', None)\n", "('proteinname', None)\n", "('positioninpuck', None)\n", "('priority', None)\n", "('comments', None)\n", "('data_collection_parameters', None)\n", "('events', [SampleEventResponse(id=37, sample_id=28, event_type='Mounted', timestamp=datetime.datetime(2025, 1, 29, 14, 3)), SampleEventResponse(id=38, sample_id=28, event_type='Unmounted', timestamp=datetime.datetime(2025, 1, 29, 14, 3, 50)), SampleEventResponse(id=408, sample_id=28, event_type='Mounted', timestamp=datetime.datetime(2025, 1, 31, 13, 10, 3)), SampleEventResponse(id=409, sample_id=28, event_type='Unmounted', timestamp=datetime.datetime(2025, 1, 31, 13, 12, 35)), SampleEventResponse(id=410, sample_id=28, event_type='Mounted', timestamp=datetime.datetime(2025, 1, 31, 13, 16, 55)), SampleEventResponse(id=411, sample_id=28, event_type='Unmounted', timestamp=datetime.datetime(2025, 1, 31, 13, 17, 8)), SampleEventResponse(id=412, sample_id=28, event_type='Mounted', timestamp=datetime.datetime(2025, 1, 31, 14, 46, 18))])\n", "('mount_count', 4)\n", "('unmount_count', 3)\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n", " warnings.warn(\n" ] } ], "execution_count": 11 }, { "metadata": { "ExecuteTime": { "end_time": "2025-01-31T12:06:44.184990Z", "start_time": "2025-01-31T12:06:44.174766Z" } }, "cell_type": "code", "source": [ "### not working\n", "with aareDBclient.ApiClient(configuration) as api_client:\n", " # Create an instance of the Samples API class\n", " api_instance = aareDBclient.SamplesApi(api_client)\n", "\n", " try:\n", " # Get the last sample event\n", " last_event_response = api_instance.get_last_sample_event_samples_samples_sample_id_events_last_get(27)\n", " print(\"The response of get_last_sample_event:\\n\")\n", " pprint(last_event_response)\n", "\n", " except ApiException as e:\n", " print(\"Exception when calling get_last_sample_event: %s\\n\" % e)\n" ], "id": "6a808ee09f97ae13", "outputs": [ { "ename": "AttributeError", "evalue": "'SamplesApi' object has no attribute 'get_last_sample_event_samples_samples_sample_id_events_last_get'", "output_type": "error", "traceback": [ "\u001B[0;31m---------------------------------------------------------------------------\u001B[0m", "\u001B[0;31mAttributeError\u001B[0m Traceback (most recent call last)", "Cell \u001B[0;32mIn[6], line 7\u001B[0m\n\u001B[1;32m 3\u001B[0m api_instance \u001B[38;5;241m=\u001B[39m aareDBclient\u001B[38;5;241m.\u001B[39mSamplesApi(api_client)\n\u001B[1;32m 5\u001B[0m \u001B[38;5;28;01mtry\u001B[39;00m:\n\u001B[1;32m 6\u001B[0m \u001B[38;5;66;03m# Get the last sample event\u001B[39;00m\n\u001B[0;32m----> 7\u001B[0m last_event_response \u001B[38;5;241m=\u001B[39m \u001B[43mapi_instance\u001B[49m\u001B[38;5;241;43m.\u001B[39;49m\u001B[43mget_last_sample_event_samples_samples_sample_id_events_last_get\u001B[49m(\u001B[38;5;241m27\u001B[39m)\n\u001B[1;32m 8\u001B[0m \u001B[38;5;28mprint\u001B[39m(\u001B[38;5;124m\"\u001B[39m\u001B[38;5;124mThe response of get_last_sample_event:\u001B[39m\u001B[38;5;130;01m\\n\u001B[39;00m\u001B[38;5;124m\"\u001B[39m)\n\u001B[1;32m 9\u001B[0m pprint(last_event_response)\n", "\u001B[0;31mAttributeError\u001B[0m: 'SamplesApi' object has no attribute 'get_last_sample_event_samples_samples_sample_id_events_last_get'" ] } ], "execution_count": 6 }, { "metadata": { "ExecuteTime": { "end_time": "2025-01-30T12:38:46.149389Z", "start_time": "2025-01-30T12:38:46.110767Z" } }, "cell_type": "code", "source": [ "from aareDBclient import ApiClient, SamplesApi # Import the appropriate client\n", "from aareDBclient.rest import ApiException\n", "import mimetypes\n", "\n", "# File path to the image\n", "file_path = \"backend/tests/sample_image/IMG_1942.jpg\"\n", "\n", "# Sample ID\n", "sample_id = 27 # Replace with a valid sample_id from your FastAPI backend\n", "\n", "# Initialize the API client\n", "with ApiClient(configuration) as api_client:\n", " api_instance = SamplesApi(api_client) # Adjust as per your API structure\n", "\n", " try:\n", " # Open the file and read as binary\n", " with open(file_path, \"rb\") as file:\n", " # Get the MIME type for the file\n", " mime_type, _ = mimetypes.guess_type(file_path)\n", "\n", " # Call the API method for uploading sample images\n", " response = api_instance.upload_sample_images_samples_samples_sample_id_upload_images_post(\n", " sample_id=sample_id,\n", " uploaded_files=[file.read()] # Pass raw bytes as a list\n", " )\n", "\n", " # Print the response from the API\n", " print(\"API Response:\")\n", " print(response)\n", "\n", " except ApiException as e:\n", " # Handle API exception gracefully\n", " print(\"Exception occurred while uploading the file:\")\n", " print(f\"Status Code: {e.status}\")\n", " if e.body:\n", " print(f\"Error Details: {e.body}\")" ], "id": "40404614d1a63f95", "outputs": [ { "ename": "ValueError", "evalue": "Unsupported file value", "output_type": "error", "traceback": [ "\u001B[0;31m---------------------------------------------------------------------------\u001B[0m", "\u001B[0;31mValueError\u001B[0m Traceback (most recent call last)", "Cell \u001B[0;32mIn[19], line 22\u001B[0m\n\u001B[1;32m 19\u001B[0m mime_type, _ \u001B[38;5;241m=\u001B[39m mimetypes\u001B[38;5;241m.\u001B[39mguess_type(file_path)\n\u001B[1;32m 21\u001B[0m \u001B[38;5;66;03m# Call the API method for uploading sample images\u001B[39;00m\n\u001B[0;32m---> 22\u001B[0m response \u001B[38;5;241m=\u001B[39m \u001B[43mapi_instance\u001B[49m\u001B[38;5;241;43m.\u001B[39;49m\u001B[43mupload_sample_images_samples_samples_sample_id_upload_images_post\u001B[49m\u001B[43m(\u001B[49m\n\u001B[1;32m 23\u001B[0m \u001B[43m \u001B[49m\u001B[43msample_id\u001B[49m\u001B[38;5;241;43m=\u001B[39;49m\u001B[43msample_id\u001B[49m\u001B[43m,\u001B[49m\n\u001B[1;32m 24\u001B[0m \u001B[43m \u001B[49m\u001B[43muploaded_files\u001B[49m\u001B[38;5;241;43m=\u001B[39;49m\u001B[43m[\u001B[49m\u001B[43mfile\u001B[49m\u001B[38;5;241;43m.\u001B[39;49m\u001B[43mread\u001B[49m\u001B[43m(\u001B[49m\u001B[43m)\u001B[49m\u001B[43m]\u001B[49m\u001B[43m \u001B[49m\u001B[38;5;66;43;03m# Pass raw bytes as a list\u001B[39;49;00m\n\u001B[1;32m 25\u001B[0m \u001B[43m\u001B[49m\u001B[43m)\u001B[49m\n\u001B[1;32m 27\u001B[0m \u001B[38;5;66;03m# Print the response from the API\u001B[39;00m\n\u001B[1;32m 28\u001B[0m \u001B[38;5;28mprint\u001B[39m(\u001B[38;5;124m\"\u001B[39m\u001B[38;5;124mAPI Response:\u001B[39m\u001B[38;5;124m\"\u001B[39m)\n", "File \u001B[0;32m/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/pydantic/validate_call_decorator.py:60\u001B[0m, in \u001B[0;36mvalidate_call..validate..wrapper_function\u001B[0;34m(*args, **kwargs)\u001B[0m\n\u001B[1;32m 58\u001B[0m \u001B[38;5;129m@functools\u001B[39m\u001B[38;5;241m.\u001B[39mwraps(function)\n\u001B[1;32m 59\u001B[0m \u001B[38;5;28;01mdef\u001B[39;00m\u001B[38;5;250m \u001B[39m\u001B[38;5;21mwrapper_function\u001B[39m(\u001B[38;5;241m*\u001B[39margs, \u001B[38;5;241m*\u001B[39m\u001B[38;5;241m*\u001B[39mkwargs):\n\u001B[0;32m---> 60\u001B[0m \u001B[38;5;28;01mreturn\u001B[39;00m \u001B[43mvalidate_call_wrapper\u001B[49m\u001B[43m(\u001B[49m\u001B[38;5;241;43m*\u001B[39;49m\u001B[43margs\u001B[49m\u001B[43m,\u001B[49m\u001B[43m \u001B[49m\u001B[38;5;241;43m*\u001B[39;49m\u001B[38;5;241;43m*\u001B[39;49m\u001B[43mkwargs\u001B[49m\u001B[43m)\u001B[49m\n", "File \u001B[0;32m/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/pydantic/_internal/_validate_call.py:96\u001B[0m, in \u001B[0;36mValidateCallWrapper.__call__\u001B[0;34m(self, *args, **kwargs)\u001B[0m\n\u001B[1;32m 95\u001B[0m \u001B[38;5;28;01mdef\u001B[39;00m\u001B[38;5;250m \u001B[39m\u001B[38;5;21m__call__\u001B[39m(\u001B[38;5;28mself\u001B[39m, \u001B[38;5;241m*\u001B[39margs: Any, \u001B[38;5;241m*\u001B[39m\u001B[38;5;241m*\u001B[39mkwargs: Any) \u001B[38;5;241m-\u001B[39m\u001B[38;5;241m>\u001B[39m Any:\n\u001B[0;32m---> 96\u001B[0m res \u001B[38;5;241m=\u001B[39m \u001B[38;5;28;43mself\u001B[39;49m\u001B[38;5;241;43m.\u001B[39;49m\u001B[43m__pydantic_validator__\u001B[49m\u001B[38;5;241;43m.\u001B[39;49m\u001B[43mvalidate_python\u001B[49m\u001B[43m(\u001B[49m\u001B[43mpydantic_core\u001B[49m\u001B[38;5;241;43m.\u001B[39;49m\u001B[43mArgsKwargs\u001B[49m\u001B[43m(\u001B[49m\u001B[43margs\u001B[49m\u001B[43m,\u001B[49m\u001B[43m \u001B[49m\u001B[43mkwargs\u001B[49m\u001B[43m)\u001B[49m\u001B[43m)\u001B[49m\n\u001B[1;32m 97\u001B[0m \u001B[38;5;28;01mif\u001B[39;00m \u001B[38;5;28mself\u001B[39m\u001B[38;5;241m.\u001B[39m__return_pydantic_validator__:\n\u001B[1;32m 98\u001B[0m \u001B[38;5;28;01mreturn\u001B[39;00m \u001B[38;5;28mself\u001B[39m\u001B[38;5;241m.\u001B[39m__return_pydantic_validator__(res)\n", "File \u001B[0;32m~/PycharmProjects/heidi-v2/backend/aareDBclient/api/samples_api.py:874\u001B[0m, in \u001B[0;36mSamplesApi.upload_sample_images_samples_samples_sample_id_upload_images_post\u001B[0;34m(self, sample_id, uploaded_files, _request_timeout, _request_auth, _content_type, _headers, _host_index)\u001B[0m\n\u001B[1;32m 827\u001B[0m \u001B[38;5;129m@validate_call\u001B[39m\n\u001B[1;32m 828\u001B[0m \u001B[38;5;28;01mdef\u001B[39;00m\u001B[38;5;250m \u001B[39m\u001B[38;5;21mupload_sample_images_samples_samples_sample_id_upload_images_post\u001B[39m(\n\u001B[1;32m 829\u001B[0m \u001B[38;5;28mself\u001B[39m,\n\u001B[0;32m (...)\u001B[0m\n\u001B[1;32m 843\u001B[0m _host_index: Annotated[StrictInt, Field(ge\u001B[38;5;241m=\u001B[39m\u001B[38;5;241m0\u001B[39m, le\u001B[38;5;241m=\u001B[39m\u001B[38;5;241m0\u001B[39m)] \u001B[38;5;241m=\u001B[39m \u001B[38;5;241m0\u001B[39m,\n\u001B[1;32m 844\u001B[0m ) \u001B[38;5;241m-\u001B[39m\u001B[38;5;241m>\u001B[39m \u001B[38;5;28mobject\u001B[39m:\n\u001B[1;32m 845\u001B[0m \u001B[38;5;250m \u001B[39m\u001B[38;5;124;03m\"\"\"Upload Sample Images\u001B[39;00m\n\u001B[1;32m 846\u001B[0m \n\u001B[1;32m 847\u001B[0m \n\u001B[0;32m (...)\u001B[0m\n\u001B[1;32m 871\u001B[0m \u001B[38;5;124;03m :return: Returns the result object.\u001B[39;00m\n\u001B[1;32m 872\u001B[0m \u001B[38;5;124;03m \"\"\"\u001B[39;00m \u001B[38;5;66;03m# noqa: E501\u001B[39;00m\n\u001B[0;32m--> 874\u001B[0m _param \u001B[38;5;241m=\u001B[39m \u001B[38;5;28;43mself\u001B[39;49m\u001B[38;5;241;43m.\u001B[39;49m\u001B[43m_upload_sample_images_samples_samples_sample_id_upload_images_post_serialize\u001B[49m\u001B[43m(\u001B[49m\n\u001B[1;32m 875\u001B[0m \u001B[43m \u001B[49m\u001B[43msample_id\u001B[49m\u001B[38;5;241;43m=\u001B[39;49m\u001B[43msample_id\u001B[49m\u001B[43m,\u001B[49m\n\u001B[1;32m 876\u001B[0m \u001B[43m 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{\n\u001B[1;32m 884\u001B[0m \u001B[38;5;124m'\u001B[39m\u001B[38;5;124m200\u001B[39m\u001B[38;5;124m'\u001B[39m: \u001B[38;5;124m\"\u001B[39m\u001B[38;5;124mobject\u001B[39m\u001B[38;5;124m\"\u001B[39m,\n\u001B[1;32m 885\u001B[0m \u001B[38;5;124m'\u001B[39m\u001B[38;5;124m422\u001B[39m\u001B[38;5;124m'\u001B[39m: \u001B[38;5;124m\"\u001B[39m\u001B[38;5;124mHTTPValidationError\u001B[39m\u001B[38;5;124m\"\u001B[39m,\n\u001B[1;32m 886\u001B[0m }\n\u001B[1;32m 887\u001B[0m response_data \u001B[38;5;241m=\u001B[39m \u001B[38;5;28mself\u001B[39m\u001B[38;5;241m.\u001B[39mapi_client\u001B[38;5;241m.\u001B[39mcall_api(\n\u001B[1;32m 888\u001B[0m \u001B[38;5;241m*\u001B[39m_param,\n\u001B[1;32m 889\u001B[0m _request_timeout\u001B[38;5;241m=\u001B[39m_request_timeout\n\u001B[1;32m 890\u001B[0m )\n", "File \u001B[0;32m~/PycharmProjects/heidi-v2/backend/aareDBclient/api/samples_api.py:1096\u001B[0m, in \u001B[0;36mSamplesApi._upload_sample_images_samples_samples_sample_id_upload_images_post_serialize\u001B[0;34m(self, sample_id, uploaded_files, _request_auth, _content_type, _headers, _host_index)\u001B[0m\n\u001B[1;32m 1092\u001B[0m \u001B[38;5;66;03m# authentication setting\u001B[39;00m\n\u001B[1;32m 1093\u001B[0m _auth_settings: List[\u001B[38;5;28mstr\u001B[39m] \u001B[38;5;241m=\u001B[39m [\n\u001B[1;32m 1094\u001B[0m ]\n\u001B[0;32m-> 1096\u001B[0m \u001B[38;5;28;01mreturn\u001B[39;00m \u001B[38;5;28;43mself\u001B[39;49m\u001B[38;5;241;43m.\u001B[39;49m\u001B[43mapi_client\u001B[49m\u001B[38;5;241;43m.\u001B[39;49m\u001B[43mparam_serialize\u001B[49m\u001B[43m(\u001B[49m\n\u001B[1;32m 1097\u001B[0m \u001B[43m \u001B[49m\u001B[43mmethod\u001B[49m\u001B[38;5;241;43m=\u001B[39;49m\u001B[38;5;124;43m'\u001B[39;49m\u001B[38;5;124;43mPOST\u001B[39;49m\u001B[38;5;124;43m'\u001B[39;49m\u001B[43m,\u001B[49m\n\u001B[1;32m 1098\u001B[0m \u001B[43m 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setting\u001B[39;00m\n\u001B[1;32m 217\u001B[0m \u001B[38;5;28mself\u001B[39m\u001B[38;5;241m.\u001B[39mupdate_params_for_auth(\n\u001B[1;32m 218\u001B[0m header_params,\n\u001B[1;32m 219\u001B[0m query_params,\n\u001B[0;32m (...)\u001B[0m\n\u001B[1;32m 224\u001B[0m request_auth\u001B[38;5;241m=\u001B[39m_request_auth\n\u001B[1;32m 225\u001B[0m )\n", "File \u001B[0;32m~/PycharmProjects/heidi-v2/backend/aareDBclient/api_client.py:554\u001B[0m, in \u001B[0;36mApiClient.files_parameters\u001B[0;34m(self, files)\u001B[0m\n\u001B[1;32m 552\u001B[0m filedata \u001B[38;5;241m=\u001B[39m v\n\u001B[1;32m 553\u001B[0m \u001B[38;5;28;01melse\u001B[39;00m:\n\u001B[0;32m--> 554\u001B[0m \u001B[38;5;28;01mraise\u001B[39;00m \u001B[38;5;167;01mValueError\u001B[39;00m(\u001B[38;5;124m\"\u001B[39m\u001B[38;5;124mUnsupported file value\u001B[39m\u001B[38;5;124m\"\u001B[39m)\n\u001B[1;32m 555\u001B[0m mimetype \u001B[38;5;241m=\u001B[39m (\n\u001B[1;32m 556\u001B[0m mimetypes\u001B[38;5;241m.\u001B[39mguess_type(filename)[\u001B[38;5;241m0\u001B[39m]\n\u001B[1;32m 557\u001B[0m \u001B[38;5;129;01mor\u001B[39;00m \u001B[38;5;124m'\u001B[39m\u001B[38;5;124mapplication/octet-stream\u001B[39m\u001B[38;5;124m'\u001B[39m\n\u001B[1;32m 558\u001B[0m )\n\u001B[1;32m 559\u001B[0m params\u001B[38;5;241m.\u001B[39mappend(\n\u001B[1;32m 560\u001B[0m \u001B[38;5;28mtuple\u001B[39m([k, \u001B[38;5;28mtuple\u001B[39m([filename, filedata, mimetype])])\n\u001B[1;32m 561\u001B[0m )\n", "\u001B[0;31mValueError\u001B[0m: Unsupported file value" ] } ], "execution_count": 19 }, { "metadata": { "ExecuteTime": { "end_time": "2025-01-20T15:14:51.219091Z", "start_time": "2025-01-20T15:14:51.216755Z" } }, "cell_type": "code", "source": "help(api_instance.upload_sample_images_samples_samples_sample_id_upload_images_post)", "id": "8dd70634ffa5f37e", "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Help on method upload_sample_images_samples_samples_sample_id_upload_images_post in module aareDBclient.api.samples_api:\n", "\n", "upload_sample_images_samples_samples_sample_id_upload_images_post(sample_id: Annotated[int, Strict(strict=True)], uploaded_files: List[Union[Annotated[bytes, Strict(strict=True)], Annotated[str, Strict(strict=True)]]], _request_timeout: Union[NoneType, Annotated[float, Strict(strict=True), FieldInfo(annotation=NoneType, required=True, metadata=[Gt(gt=0)])], Tuple[Annotated[float, Strict(strict=True), FieldInfo(annotation=NoneType, required=True, metadata=[Gt(gt=0)])], Annotated[float, Strict(strict=True), FieldInfo(annotation=NoneType, required=True, metadata=[Gt(gt=0)])]]] = None, _request_auth: Optional[Dict[Annotated[str, Strict(strict=True)], Any]] = None, _content_type: Optional[Annotated[str, Strict(strict=True)]] = None, _headers: Optional[Dict[Annotated[str, Strict(strict=True)], Any]] = None, _host_index: Annotated[int, Strict(strict=True), FieldInfo(annotation=NoneType, required=True, metadata=[Ge(ge=0), Le(le=0)])] = 0) -> object method of aareDBclient.api.samples_api.SamplesApi instance\n", " Upload Sample Images\n", "\n", " Uploads images for a sample and stores them in a directory structure: images/user/date/dewar_name/puck_name/position/. Args: sample_id (int): ID of the sample. uploaded_files (Union[List[UploadFile], List[bytes]]): List of image files (as UploadFile or raw bytes). db (Session): SQLAlchemy database session.\n", "\n", " :param sample_id: (required)\n", " :type sample_id: int\n", " :param uploaded_files: (required)\n", " :type uploaded_files: List[bytearray]\n", " :param _request_timeout: timeout setting for this request. If one\n", " number provided, it will be total request\n", " timeout. It can also be a pair (tuple) of\n", " (connection, read) timeouts.\n", " :type _request_timeout: int, tuple(int, int), optional\n", " :param _request_auth: set to override the auth_settings for an a single\n", " request; this effectively ignores the\n", " authentication in the spec for a single request.\n", " :type _request_auth: dict, optional\n", " :param _content_type: force content-type for the request.\n", " :type _content_type: str, Optional\n", " :param _headers: set to override the headers for a single\n", " request; this effectively ignores the headers\n", " in the spec for a single request.\n", " :type _headers: dict, optional\n", " :param _host_index: set to override the host_index for a single\n", " request; this effectively ignores the host_index\n", " in the spec for a single request.\n", " :type _host_index: int, optional\n", " :return: Returns the result object.\n", "\n" ] } ], "execution_count": 51 } ], "metadata": { "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 2 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython2", "version": "2.7.6" } }, "nbformat": 4, "nbformat_minor": 5 }