diff --git a/backend/app/routers/puck.py b/backend/app/routers/puck.py index 07364d9..a51b145 100644 --- a/backend/app/routers/puck.py +++ b/backend/app/routers/puck.py @@ -12,6 +12,7 @@ from app.schemas import ( PuckWithTellPosition, Sample, SetTellPosition, + DataCollectionParameters, ) from app.models import ( Puck as PuckModel, @@ -189,6 +190,86 @@ async def set_tell_positions( return results +@router.get("/with-tell-position", response_model=List[PuckWithTellPosition]) +async def get_pucks_with_tell_position(db: Session = Depends(get_db)): + """ + Retrieve all pucks with a `tell_position` set (not null), + their associated samples, and the latest `tell_position` value (if any). + """ + # Step 1: Prepare a subquery to fetch the latest event timestamp for each + # puck with a non-null tell_position + latest_event_subquery = ( + db.query( + PuckEventModel.puck_id, + func.max(PuckEventModel.timestamp).label("latest_timestamp"), + ) + .filter( + PuckEventModel.tell_position.isnot(None) + ) # Filter non-null tell_positions + .group_by(PuckEventModel.puck_id) # Group by puck + .subquery() + ) + + # Step 2: Query the pucks and their latest `tell_position` by joining the subquery + pucks_with_events = ( + db.query(PuckModel, PuckEventModel, DewarModel) + .join(PuckEventModel, PuckModel.id == PuckEventModel.puck_id) + .join( + latest_event_subquery, + (PuckEventModel.puck_id == latest_event_subquery.c.puck_id) + & (PuckEventModel.timestamp == latest_event_subquery.c.latest_timestamp), + ) + .outerjoin( + DewarModel, PuckModel.dewar_id == DewarModel.id + ) # Outer join with DewarModel + .all() + ) + + if not pucks_with_events: + return [] + + # Step 3: Construct the response with pucks and their latest tell_position + results = [] + for puck, event, dewar in pucks_with_events: + # Fetch associated samples for this puck + samples = db.query(SampleModel).filter(SampleModel.puck_id == puck.id).all() + + # Construct the response model + results.append( + PuckWithTellPosition( + id=int(puck.id), + puck_name=str(puck.puck_name), + puck_type=str(puck.puck_type), + puck_location_in_dewar=str(puck.puck_location_in_dewar) + if puck.puck_location_in_dewar + else None, + dewar_id=int(puck.dewar_id) if puck.dewar_id else None, + dewar_name=str(dewar.dewar_name) + if dewar and dewar.dewar_name + else None, + samples=[ + Sample( + id=sample.id, + sample_name=sample.sample_name, + position=sample.position, + puck_id=sample.puck_id, + data_collection_parameters=( + DataCollectionParameters( + **sample.data_collection_parameters + ) + if isinstance(sample.data_collection_parameters, dict) + else sample.data_collection_parameters + ), + ) + for sample in samples + ], + tell_position=str(event.tell_position) if event else None, + ) + ) + + return results + + @router.get("/{puck_id}", response_model=PuckSchema) async def get_puck(puck_id: str, db: Session = Depends(get_db)): puck = db.query(PuckModel).filter(PuckModel.id == puck_id).first() @@ -403,60 +484,3 @@ async def get_pucks_by_slot(slot_identifier: str, db: Session = Depends(get_db)) logger.info(f"Final response for slot {slot_identifier}: {results}") return results - - -@router.get("/with-tell-position", response_model=List[PuckWithTellPosition]) -async def get_pucks_with_tell_position(db: Session = Depends(get_db)): - """ - Retrieve all pucks with a `tell_position` set (not null), - their associated samples, and the latest `tell_position` value (if any). - """ - - pucks_with_events = ( - db.query(PuckModel, PuckEventModel) - .join(PuckEventModel, PuckModel.id == PuckEventModel.puck_id) - .filter( - PuckEventModel.tell_position.isnot(None) - ) # Ensure only non-null tell_positions - .order_by(PuckEventModel.timestamp.desc()) # Get the most recent event - .distinct(PuckModel.id) # Ensure one row per puck (latest event is prioritized) - .all() - ) - - if not pucks_with_events: - raise HTTPException( - status_code=404, - detail="No pucks with a `tell_position` found.", - ) - - # Construct the response with pucks and their latest tell_position - results = [] - for puck, event in pucks_with_events: - # Retrieve associated samples for this puck - samples = db.query(SampleModel).filter(SampleModel.puck_id == puck.id).all() - - # Construct the response model - results.append( - PuckWithTellPosition( - id=int(puck.id), # Explicit casting - puck_name=str(puck.puck_name), - puck_type=str(puck.puck_type), - puck_location_in_dewar=str(puck.puck_location_in_dewar) - if puck.puck_location_in_dewar - else None, - dewar_id=int(puck.dewar_id) if puck.dewar_id else None, - samples=[ - Sample( - id=sample.id, - sample_name=sample.sample_name, - position=sample.position, - ) - for sample in samples - ], - tell_position=str(event.tell_position) - if event - else None, # Include tell_position - ) - ) - - return results diff --git a/testfunctions.ipynb b/testfunctions.ipynb index bdbb368..3b4e9c6 100644 --- a/testfunctions.ipynb +++ b/testfunctions.ipynb @@ -6,11 +6,12 @@ "metadata": { "collapsed": true, "ExecuteTime": { - "end_time": "2025-01-09T15:53:14.008758Z", - "start_time": "2025-01-09T15:53:14.005084Z" + "end_time": "2025-01-09T19:28:22.688759Z", + "start_time": "2025-01-09T19:28:22.686126Z" } }, "source": [ + "import json\n", "import aareDBclient\n", "from aareDBclient.rest import ApiException\n", "from pprint import pprint\n", @@ -36,13 +37,13 @@ ] } ], - "execution_count": 6 + "execution_count": 60 }, { "metadata": { "ExecuteTime": { - "end_time": "2025-01-09T15:55:27.795447Z", - "start_time": "2025-01-09T15:55:27.775421Z" + "end_time": "2025-01-09T19:28:27.172889Z", + "start_time": "2025-01-09T19:28:27.158279Z" } }, "cell_type": "code", @@ -69,8 +70,8 @@ "text": [ "The response of PucksApi->get_pucks_by_slot_pucks_slot_slot_identifier_get:\n", "\n", - "[PuckWithTellPosition(id=31, puck_name='CPS-4093', puck_type='unipuck', puck_location_in_dewar='1', dewar_id=6, dewar_name='Dewar_test', user='e16371', samples=None, tell_position='B1'),\n", - " PuckWithTellPosition(id=32, puck_name='CPS-4178', puck_type='unipuck', puck_location_in_dewar='2', dewar_id=6, dewar_name='Dewar_test', user='e16371', samples=None, tell_position='B2'),\n", + "[PuckWithTellPosition(id=31, puck_name='CPS-4093', puck_type='unipuck', puck_location_in_dewar='1', dewar_id=6, dewar_name='Dewar_test', user='e16371', samples=None, tell_position='C2'),\n", + " PuckWithTellPosition(id=32, puck_name='CPS-4178', puck_type='unipuck', puck_location_in_dewar='2', dewar_id=6, dewar_name='Dewar_test', user='e16371', samples=None, tell_position='C3'),\n", " PuckWithTellPosition(id=33, puck_name='PSIMX-122', puck_type='unipuck', puck_location_in_dewar='3', dewar_id=6, dewar_name='Dewar_test', user='e16371', samples=None, tell_position=None),\n", " PuckWithTellPosition(id=34, puck_name='E-07', puck_type='unipuck', puck_location_in_dewar='4', dewar_id=6, dewar_name='Dewar_test', user='e16371', samples=None, tell_position=None),\n", " PuckWithTellPosition(id=35, puck_name='CPS-6597', puck_type='unipuck', puck_location_in_dewar='5', dewar_id=6, dewar_name='Dewar_test', user='e16371', samples=None, tell_position=None),\n", @@ -87,13 +88,13 @@ ] } ], - "execution_count": 14 + "execution_count": 61 }, { "metadata": { "ExecuteTime": { - "end_time": "2025-01-09T15:55:22.123038Z", - "start_time": "2025-01-09T15:55:22.091256Z" + "end_time": "2025-01-09T16:38:00.334741Z", + "start_time": "2025-01-09T16:38:00.302589Z" } }, "cell_type": "code", @@ -106,7 +107,7 @@ " # This part is commented but will be used to attribute a puck to a position of the TELL\n", " # Define the puck ID and payload\n", "\n", - " payload = [SetTellPosition(puck_name='CPS-4093', segment='B', puck_in_segment=1),SetTellPosition(puck_name='CPS-4178', segment='B', puck_in_segment=2)]\n", + " payload = [SetTellPosition(puck_name='CPS-4093', segment='C', puck_in_segment=2),SetTellPosition(puck_name='CPS-4178', segment='C', puck_in_segment=3)]\n", " #payload = []\n", "\n", " try:\n", @@ -127,12 +128,12 @@ "The response of PucksApi->pucks_puck_id_tell_position_put:\n", "\n", "[{'message': 'The tell_position was updated successfully.',\n", - " 'new_position': 'B1',\n", + " 'new_position': 'C2',\n", " 'previous_position': None,\n", " 'puck_name': 'CPS-4093',\n", " 'status': 'updated'},\n", " {'message': 'The tell_position was updated successfully.',\n", - " 'new_position': 'B2',\n", + " 'new_position': 'C3',\n", " 'previous_position': None,\n", " 'puck_name': 'CPS-4178',\n", " 'status': 'updated'}]\n" @@ -147,29 +148,3368 @@ ] } ], - "execution_count": 13 + "execution_count": 36 }, { - "metadata": {}, + "metadata": { + "ExecuteTime": { + "end_time": "2025-01-09T19:34:35.528866Z", + "start_time": "2025-01-09T19:34:35.490890Z" + } + }, "cell_type": "code", "source": [ - "\n", + "with aareDBclient.ApiClient(configuration) as api_client:\n", + " # Create an instance of the API class\n", + " api_instance = aareDBclient.PucksApi(api_client)\n", "\n", " # GET request: Fetch all pucks in the tell\n", " try:\n", " all_pucks_response = api_instance.get_pucks_with_tell_position_pucks_with_tell_position_get() # Replace with appropriate method\n", + " # Convert the response to a JSON-like string for pretty printing\n", + " formatted_response = json.dumps(\n", + " [puck.to_dict() for puck in all_pucks_response], # .to_dict() assumes API models can convert to Python dict\n", + " indent=4 # Use indentation for readability\n", + " )\n", + "\n", " print(\"The response of PucksApi->get_all_pucks_in_tell:\\n\")\n", - " pprint(all_pucks_response)\n", + " print(formatted_response)\n", "\n", " except ApiException as e:\n", " print(\"Exception when calling PucksApi->get_all_pucks_in_tell: %s\\n\" % e)" ], "id": "95f8c133359945d5", - "outputs": [], - "execution_count": null + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "The response of PucksApi->get_all_pucks_in_tell:\n", + "\n", + "[\n", + " {\n", + " \"id\": 31,\n", + " \"puck_name\": \"CPS-4093\",\n", + " \"puck_type\": \"unipuck\",\n", + " \"puck_location_in_dewar\": \"1\",\n", + " \"dewar_id\": 6,\n", + " \"dewar_name\": \"Dewar_test\",\n", + " \"user\": \"e16371\",\n", + " \"samples\": [\n", + " {\n", + " \"id\": 260,\n", + " \"sample_name\": \"lov_1\",\n", + " \"position\": 1,\n", + " \"puck_id\": 31,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"prout_pouet\",\n", + " \"oscillation\": 0.1,\n", + " \"exposure\": 0.02,\n", + " \"totalrange\": 270,\n", + " \"transmission\": 20,\n", + " \"targetresolution\": 1.5,\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " \"ffcscampaign\": false,\n", + " \"aperture\": null,\n", + " \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " },\n", + " {\n", + " \"id\": 261,\n", + " \"sample_name\": \"lov_2\",\n", + " \"position\": 2,\n", + " \"puck_id\": 31,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"{date}/{prefix}\",\n", + " \"oscillation\": 0.1,\n", + " \"exposure\": 0.02,\n", + " \"totalrange\": 270,\n", + " \"transmission\": 20,\n", + " \"targetresolution\": 1.5,\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " \"ffcscampaign\": false,\n", + " \"aperture\": null,\n", + " \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " },\n", + " {\n", + " \"id\": 262,\n", + " \"sample_name\": \"lov_3\",\n", + " \"position\": 3,\n", + " \"puck_id\": 31,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"{date}/{prefix}\",\n", + " \"oscillation\": 0.1,\n", + " \"exposure\": 0.02,\n", + " \"totalrange\": 270,\n", + " \"transmission\": 20,\n", + " \"targetresolution\": 1.5,\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " \"ffcscampaign\": false,\n", + " \"aperture\": null,\n", + " \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " },\n", + " {\n", + " \"id\": 263,\n", + " \"sample_name\": \"lov_4\",\n", + " \"position\": 4,\n", + " \"puck_id\": 31,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"{date}/{prefix}\",\n", + " \"oscillation\": 0.1,\n", + " \"exposure\": 0.02,\n", + " \"totalrange\": 270,\n", + " \"transmission\": 20,\n", + " \"targetresolution\": 1.5,\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " \"ffcscampaign\": false,\n", + " \"aperture\": null,\n", + " \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " },\n", + " {\n", + " \"id\": 264,\n", + " \"sample_name\": \"lov_5\",\n", + " \"position\": 5,\n", + " \"puck_id\": 31,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"{date}/{prefix}\",\n", + " \"oscillation\": 0.1,\n", + " \"exposure\": 0.02,\n", + " \"totalrange\": 270,\n", + " \"transmission\": 20,\n", + " \"targetresolution\": 1.5,\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " \"ffcscampaign\": false,\n", + " \"aperture\": null,\n", + " \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " },\n", + " {\n", + " \"id\": 265,\n", + " \"sample_name\": \"lov_6\",\n", + " \"position\": 6,\n", + " \"puck_id\": 31,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"{date}/{prefix}\",\n", + " \"oscillation\": 0.1,\n", + " \"exposure\": 0.02,\n", + " \"totalrange\": 270,\n", + " \"transmission\": 20,\n", + " \"targetresolution\": 1.5,\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " \"ffcscampaign\": false,\n", + " \"aperture\": null,\n", + " \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " },\n", + " {\n", + " \"id\": 266,\n", + " \"sample_name\": \"lyso_8\",\n", + " \"position\": 7,\n", + " \"puck_id\": 31,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"{date}/{prefix}\",\n", + " \"oscillation\": 0.1,\n", + " \"exposure\": 0.02,\n", + " \"totalrange\": 270,\n", + " \"transmission\": 20,\n", + " \"targetresolution\": 1.5,\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " \"ffcscampaign\": false,\n", + " \"aperture\": null,\n", + " \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " },\n", + " {\n", + " \"id\": 267,\n", + " \"sample_name\": \"lyso_9\",\n", + " \"position\": 8,\n", + " \"puck_id\": 31,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"{date}/{prefix}\",\n", + " \"oscillation\": 0.1,\n", + " \"exposure\": 0.02,\n", + " \"totalrange\": 360,\n", + " \"transmission\": 20,\n", + " \"targetresolution\": 1.5,\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " \"ffcscampaign\": false,\n", + " \"aperture\": null,\n", + " \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " },\n", + " {\n", + " \"id\": 268,\n", + " \"sample_name\": \"lyso_10\",\n", + " \"position\": 9,\n", + " \"puck_id\": 31,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"{date}/{prefix}\",\n", + " \"oscillation\": 0.1,\n", + " \"exposure\": 0.02,\n", + " \"totalrange\": 360,\n", + " \"transmission\": 20,\n", + " \"targetresolution\": 1.5,\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " \"ffcscampaign\": false,\n", + " \"aperture\": null,\n", + " \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " },\n", + " {\n", + " \"id\": 269,\n", + " \"sample_name\": \"lyso_11\",\n", + " \"position\": 10,\n", + " \"puck_id\": 31,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"{date}/{prefix}\",\n", + " \"oscillation\": 0.1,\n", + " \"exposure\": 0.02,\n", + " \"totalrange\": 360,\n", + " \"transmission\": 20,\n", + " \"targetresolution\": 1.5,\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " \"ffcscampaign\": false,\n", + " \"aperture\": null,\n", + " \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " },\n", + " {\n", + " \"id\": 270,\n", + " \"sample_name\": \"Thau 12\",\n", + " \"position\": 11,\n", + " \"puck_id\": 31,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"{date}/{prefix}\",\n", + " \"oscillation\": 0.1,\n", + " \"exposure\": 0.02,\n", + " \"totalrange\": 360,\n", + " \"transmission\": 20,\n", + " \"targetresolution\": 1.5,\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " 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" \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " },\n", + " {\n", + " \"id\": 354,\n", + " \"sample_name\": \"toto_10\",\n", + " \"position\": 10,\n", + " \"puck_id\": 37,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"{sgPuck}/{sgPosition}\",\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " \"ffcscampaign\": false,\n", + " \"oscillation\": null,\n", + " \"exposure\": null,\n", + " \"totalrange\": null,\n", + " \"transmission\": null,\n", + " \"targetresolution\": null,\n", + " \"aperture\": null,\n", + " \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " },\n", + " {\n", + " \"id\": 355,\n", + " \"sample_name\": \"toto_11\",\n", + " \"position\": 11,\n", + " \"puck_id\": 37,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"{sgPuck}/{sgPosition}\",\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " \"ffcscampaign\": false,\n", + " \"oscillation\": null,\n", + " \"exposure\": null,\n", + " \"totalrange\": null,\n", + " \"transmission\": null,\n", + " \"targetresolution\": null,\n", + " \"aperture\": null,\n", + " \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " },\n", + " {\n", + " \"id\": 356,\n", + " \"sample_name\": \"toto_12\",\n", + " \"position\": 12,\n", + " \"puck_id\": 37,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"{sgPuck}/{sgPosition}\",\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " \"ffcscampaign\": false,\n", + " \"oscillation\": null,\n", + " \"exposure\": null,\n", + " \"totalrange\": null,\n", + " \"transmission\": null,\n", + " \"targetresolution\": null,\n", + " \"aperture\": null,\n", + " \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " },\n", + " {\n", + " \"id\": 357,\n", + " \"sample_name\": \"toto_13\",\n", + " \"position\": 13,\n", + " \"puck_id\": 37,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"{sgPuck}/{sgPosition}\",\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " \"ffcscampaign\": false,\n", + " \"oscillation\": null,\n", + " \"exposure\": null,\n", + " \"totalrange\": null,\n", + " \"transmission\": null,\n", + " \"targetresolution\": null,\n", + " \"aperture\": null,\n", + " \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " },\n", + " {\n", + " \"id\": 358,\n", + " \"sample_name\": \"toto_14\",\n", + " \"position\": 14,\n", + " \"puck_id\": 37,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"{sgPuck}/{sgPosition}\",\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " \"ffcscampaign\": false,\n", + " \"oscillation\": null,\n", + " \"exposure\": null,\n", + " \"totalrange\": null,\n", + " \"transmission\": null,\n", + " \"targetresolution\": null,\n", + " \"aperture\": null,\n", + " \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " },\n", + " {\n", + " \"id\": 359,\n", + " \"sample_name\": \"toto_15\",\n", + " \"position\": 15,\n", + " \"puck_id\": 37,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"{sgPuck}/{sgPosition}\",\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " \"ffcscampaign\": false,\n", + " \"oscillation\": null,\n", + " \"exposure\": null,\n", + " \"totalrange\": null,\n", + " \"transmission\": null,\n", + " \"targetresolution\": null,\n", + " \"aperture\": null,\n", + " \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " },\n", + " {\n", + " \"id\": 360,\n", + " \"sample_name\": \"toto_16\",\n", + " \"position\": 16,\n", + " \"puck_id\": 37,\n", + " \"data_collection_parameters\": {\n", + " \"directory\": \"{sgPuck}/{sgPosition}\",\n", + " \"autoprocfull\": false,\n", + " \"procfull\": false,\n", + " \"adpenabled\": false,\n", + " \"noano\": false,\n", + " \"ffcscampaign\": false,\n", + " \"oscillation\": null,\n", + " \"exposure\": null,\n", + " \"totalrange\": null,\n", + " \"transmission\": null,\n", + " \"targetresolution\": null,\n", + " \"aperture\": null,\n", + " \"datacollectiontype\": null,\n", + " \"processingpipeline\": null,\n", + " \"spacegroupnumber\": null,\n", + " \"cellparameters\": null,\n", + " \"rescutkey\": null,\n", + " \"rescutvalue\": null,\n", + " \"userresolution\": null,\n", + " \"pdbid\": null,\n", + " \"trustedhigh\": null,\n", + " \"autoprocextraparams\": null,\n", + " \"chiphiangles\": null,\n", + " \"dose\": null\n", + " },\n", + " \"events\": [],\n", + " \"crystalname\": null,\n", + " \"proteinname\": null,\n", + " \"positioninpuck\": null,\n", + " \"priority\": null,\n", + " \"comments\": null\n", + " }\n", + " ],\n", + " \"tell_position\": \"A1\"\n", + " }\n", + "]\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n", + " warnings.warn(\n" + ] + } + ], + "execution_count": 69 }, { - "metadata": {}, + "metadata": { + "ExecuteTime": { + "end_time": "2025-01-09T19:33:01.143326Z", + "start_time": "2025-01-09T19:33:01.128023Z" + } + }, "cell_type": "code", "source": [ "\n", @@ -178,7 +3518,7 @@ " api_instance = aareDBclient.SamplesApi(api_client)\n", "\n", " # Define the sample ID and event payload using the expected model\n", - " sample_id = 1\n", + " sample_id = 260\n", " event_payload = SampleEventCreate(\n", " event_type=\"Unmounted\" # Replace with actual event type if different\n", " )\n", @@ -193,20 +3533,74 @@ " pprint(api_response)\n", "\n", " except ApiException as e:\n", - " print(\"Exception when calling post_sample_event: %s\\n\" % e)\n", + " print(\"Exception when calling post_sample_event: %s\\n\" % e)\n" + ], + "id": "ee8abb293096334a", + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "The response of post_sample_event:\n", + "\n", + "SampleEventResponse(id=417, sample_id=260, event_type='Unmounted', timestamp=datetime.datetime(2025, 1, 9, 20, 33, 1))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n", + " warnings.warn(\n" + ] + } + ], + "execution_count": 67 + }, + { + "metadata": { + "ExecuteTime": { + "end_time": "2025-01-09T19:33:04.470152Z", + "start_time": "2025-01-09T19:33:04.454152Z" + } + }, + "cell_type": "code", + "source": [ + "\n", + "with aareDBclient.ApiClient(configuration) as api_client:\n", + " # Create an instance of the Samples API class\n", + " api_instance = aareDBclient.SamplesApi(api_client)\n", "\n", " try:\n", " # Get the last sample event\n", - " last_event_response = api_instance.get_last_sample_event_samples_samples_sample_id_events_last_get(1)\n", + " last_event_response = api_instance.get_last_sample_event_samples_samples_sample_id_events_last_get(260)\n", " print(\"The response of get_last_sample_event:\\n\")\n", " pprint(last_event_response)\n", "\n", " except ApiException as e:\n", " print(\"Exception when calling get_last_sample_event: %s\\n\" % e)\n" ], - "id": "ee8abb293096334a", - "outputs": [], - "execution_count": null + "id": "6a808ee09f97ae13", + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "The response of get_last_sample_event:\n", + "\n", + "SampleEventResponse(id=417, sample_id=260, event_type='Unmounted', timestamp=datetime.datetime(2025, 1, 9, 20, 33, 1))\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n", + " warnings.warn(\n" + ] + } + ], + "execution_count": 68 } ], "metadata": {