Refactor AareDB backend and update schemas and paths.

Revised backend schema definitions, removing unnecessary attributes and adding new configurations. Updated file path references to align with the aaredb structure. Cleaned up redundant notebook content and commented out unused database regeneration logic in the backend.

Added posting a result to the database

backend/app/schemas.py

@@ -352,16 +352,6 @@ class SampleEventCreate(BaseModel):
     event_type: Literal[
         "Mounting", "Centering", "Failed", "Lost", "Collecting", "Unmounting"
     ]
-    # event_type: str
-    # Validate event_type against accepted event types
-    # @field_validator("event_type", mode="before")
-    # def validate_event_type(cls, value):
-    #    allowed = {"Mounting", "Centering", "Failed",
-    #    "Lost", "Collecting", "Unmounting"}
-    #    if value not in allowed:
-    #        raise ValueError(f"Invalid event_type: {value}.
-    #        Accepted values are: {allowed}")
-    #    return value
 
 
 class SampleEventResponse(SampleEventCreate):
@@ -374,10 +364,7 @@ class SampleEventResponse(SampleEventCreate):
 
 
 class Results(BaseModel):
-    id: int
-    pgroup: str
-    sample_id: int
-    method: str
+    pipeline: str
     resolution: float
     unit_cell: str
     spacegroup: str
@@ -393,10 +380,6 @@ class Results(BaseModel):
     unique_refl: int
     comments: Optional[constr(max_length=200)] = None
 
-    # Define attributes for Results here
-    class Config:
-        from_attributes = True
-
 
 class ContactCreate(BaseModel):
     pgroups: str
@@ -822,6 +805,21 @@ class ImageInfo(BaseModel):
     id: int
     filepath: str
     comment: Optional[str] = None
+    event_type: str
+    # run_number: Optional[int]
+
+    class Config:
+        from_attributes = True
+
+
+class characterizationParameters(BaseModel):
+    omegaStart_deg: float
+    oscillation_deg: float
+    omegaStep: float
+    chi: float
+    phi: float
+    numberOfImages: int
+    exposureTime_s: float
 
 
 class RotationParameters(BaseModel):
@@ -882,6 +880,7 @@ class BeamlineParameters(BaseModel):
     beamSizeWidth: Optional[float] = None
     beamSizeHeight: Optional[float] = None
     # dose_MGy: float
+    characterization: Optional[characterizationParameters] = None
     rotation: Optional[RotationParameters] = None
     gridScan: Optional[gridScanParamers] = None
     jet: Optional[jetParameters] = None
@@ -922,15 +921,18 @@ class SampleResult(BaseModel):
 
 class ResultCreate(BaseModel):
     sample_id: int
-    result_id: int
-    result: Optional[dict]
+    run_id: int
+    result: Results
+
+    class Config:
+        from_attributes = True
 
 
 class ResultResponse(BaseModel):
     id: int
     sample_id: int
-    result_id: int
-    result: Optional[dict]
+    run_id: int
+    result: Results
 
     class Config:
         from_attributes = True