changed models and schemasa

frontend/src/components/SpreadsheetTable.tsx

@@ -13,11 +13,19 @@ import {
     Button,
     Box
 } from '@mui/material';
-import { SpreadsheetService } from '../../openapi';
+import { SpreadsheetService, ShipmentsService } from '../../openapi';
 import * as ExcelJS from 'exceljs';
 import { saveAs } from 'file-saver';
 
-const SpreadsheetTable = ({ raw_data, errors, headers, setRawData, onCancel, fileBlob }) => {
+const SpreadsheetTable = ({
+                              raw_data,
+                              errors,
+                              headers,
+                              setRawData,
+                              onCancel,
+                              fileBlob,
+                              shipmentId // Accept the shipmentId
+                          }) => {
     const [localErrors, setLocalErrors] = useState(errors || []);
     const [editingCell, setEditingCell] = useState({});
     const [nonEditableCells, setNonEditableCells] = useState(new Set());
@@ -25,7 +33,7 @@ const SpreadsheetTable = ({ raw_data, errors, headers, setRawData, onCancel, fil
     const generateErrorMap = (errorsList) => {
         const errorMap = new Map();
         if (Array.isArray(errorsList)) {
-            errorsList.forEach(error => {
+            errorsList.forEach((error) => {
                 const key = `${error.row}-${headers[error.cell]}`;
                 errorMap.set(key, error.message);
             });
@@ -64,7 +72,7 @@ const SpreadsheetTable = ({ raw_data, errors, headers, setRawData, onCancel, fil
 
         currentRow.data[colIndex] = newValue;
 
-        setEditingCell(prev => {
+        setEditingCell((prev) => {
             const updated = { ...prev };
             delete updated[`${rowIndex}-${colIndex}`];
             return updated;
@@ -80,10 +88,10 @@ const SpreadsheetTable = ({ raw_data, errors, headers, setRawData, onCancel, fil
             if (response.is_valid !== undefined) {
                 if (response.is_valid) {
                     const updatedErrors = localErrors.filter(
-                        error => !(error.row === currentRow.row_num && error.cell === colIndex)
+                        (error) => !(error.row === currentRow.row_num && error.cell === colIndex)
                     );
                     setLocalErrors(updatedErrors);
-                    setNonEditableCells(prev => new Set([...prev, `${rowIndex}-${colIndex}`]));
+                    setNonEditableCells((prev) => new Set([...prev, `${rowIndex}-${colIndex}`]));
                 } else {
                     const updatedErrors = [
                         ...localErrors,
@@ -107,11 +115,75 @@ const SpreadsheetTable = ({ raw_data, errors, headers, setRawData, onCancel, fil
     const handleSubmit = async () => {
         if (allCellsValid()) {
             console.log('All data is valid. Proceeding with submission...');
+            const processedData = createPayload(raw_data);
+
+            try {
+                const response = await ShipmentsService.addDewarPuckSampleToShipmentShipmentsShipmentIdAddDewarPuckSamplePost(shipmentId, processedData);
+                console.log('Shipment processed successfully:', response);
+
+                // Handle success actions, e.g., display notification, reset state, etc.
+            } catch (error) {
+                console.error('Error processing shipment:', error);
+                // Handle error actions, e.g., display notification, etc.
+            }
         } else {
             console.log('There are validation errors in the dataset. Please correct them before submission.');
         }
     };
 
+    const createPayload = (data) => {
+        const allowedFields = [
+            'priority', 'comments', 'directory', 'proteinname', 'oscillation', 'aperture',
+            'exposure', 'totalrange', 'transmission', 'dose', 'targetresolution', 'datacollectiontype',
+            'processingpipeline', 'spacegroupnumber', 'cellparameters', 'rescutkey', 'rescutvalue',
+            'userresolution', 'pdbid', 'autoprocfull', 'procfull', 'adpenabled', 'noano',
+            'ffcscampaign', 'trustedhigh', 'autoprocextraparams', 'chiphiangles'
+        ];
+
+        let dewars = {};
+
+        data.forEach((row) => {
+            const dewarname = row.data[headers.indexOf('dewarname')];
+            const puckname = row.data[headers.indexOf('puckname')];
+            const crystalname = row.data[headers.indexOf('crystalname')];
+            const positioninpuck = row.data[headers.indexOf('positioninpuck')];
+
+            if (!dewars[dewarname]) {
+                dewars[dewarname] = {
+                    dewarname: dewarname,
+                    pucks: {}
+                };
+            }
+
+            if (!dewars[dewarname].pucks[puckname]) {
+                dewars[dewarname].pucks[puckname] = {
+                    puckname: puckname,
+                    samples: []
+                };
+            }
+
+            const dataCollectionParams = {};
+            headers.forEach((header, index) => {
+                if (allowedFields.includes(header)) {
+                    dataCollectionParams[header] = row.data[index];
+                }
+            });
+
+            dewars[dewarname].pucks[puckname].samples.push({
+                crystalname: crystalname,
+                positioninpuck: positioninpuck,
+                data_collection_parameters: dataCollectionParams
+            });
+        });
+
+        const dewarsList = Object.values(dewars).map(dewar => ({
+            dewarname: dewar.dewarname,
+            pucks: Object.values(dewar.pucks)
+        }));
+
+        return { dewars: dewarsList };
+    };
+
     const downloadCorrectedSpreadsheet = async () => {
         const workbook = new ExcelJS.Workbook();
         await workbook.xlsx.load(fileBlob);