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Update dependencies and improve Python path handling

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Updated several frontend dependencies including MUI packages and added new ones like `@mui/x-charts`. Adjusted the Python path setup in the CI configuration to correctly point to the `aaredb` backend, ensuring accurate module resolution.
This commit is contained in:
GotthardG 2025-03-19 11:51:49 +01:00
parent 1c44bc160b
commit 36f9978c79
3 changed files with 18 additions and 7 deletions
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19
backend/app/routers/sample.py
View File

@ -124,7 +124,11 @@ async def create_sample_event(
return sample # Return the sample, now including `mount_count` return sample # Return the sample, now including `mount_count`
@router.post("/{sample_id}/upload-images", response_model=Image) @router.post(
"/{sample_id}/upload-images",
response_model=Image,
operation_id="upload_sample_image",
)
async def upload_sample_image( async def upload_sample_image(
sample_id: int, sample_id: int,
uploaded_file: UploadFile = File(...), uploaded_file: UploadFile = File(...),
@ -231,7 +235,9 @@ async def upload_sample_image(
return new_image return new_image
@router.get("/results", response_model=List[SampleResult]) @router.get(
"/results", response_model=List[SampleResult], operation_id="get_sample_results"
)
async def get_sample_results(active_pgroup: str, db: Session = Depends(get_db)): async def get_sample_results(active_pgroup: str, db: Session = Depends(get_db)):
# Query samples for the active pgroup using joins. # Query samples for the active pgroup using joins.
samples = ( samples = (
@ -302,6 +308,7 @@ async def get_sample_results(active_pgroup: str, db: Session = Depends(get_db)):
@router.post( @router.post(
"/samples/{sample_id}/experiment_parameters", "/samples/{sample_id}/experiment_parameters",
response_model=ExperimentParametersRead, response_model=ExperimentParametersRead,
operation_id="create_experiment_parameters_for_sample",
) )
def create_experiment_parameters_for_sample( def create_experiment_parameters_for_sample(
sample_id: int, sample_id: int,
@ -344,7 +351,9 @@ def create_experiment_parameters_for_sample(
return new_exp return new_exp
@router.post("/processing-results", response_model=ResultResponse) @router.post(
"/processing-results", response_model=ResultResponse, operation_id="create_result"
)
def create_result(payload: ResultCreate, db: Session = Depends(get_db)): def create_result(payload: ResultCreate, db: Session = Depends(get_db)):
# Check experiment existence # Check experiment existence
experiment = ( experiment = (
@ -376,7 +385,9 @@ def create_result(payload: ResultCreate, db: Session = Depends(get_db)):
@router.get( @router.get(
"/processing-results/{sample_id}/{run_id}", response_model=List[ResultResponse] "/processing-results/{sample_id}/{run_id}",
response_model=List[ResultResponse],
operation_id="get_results_for_run_and_sample",
) )
async def get_results_for_run_and_sample( async def get_results_for_run_and_sample(
sample_id: int, run_id: int, db: Session = Depends(get_db) sample_id: int, run_id: int, db: Session = Depends(get_db)

4
backend/main.py
View File

@ -143,8 +143,8 @@ async def lifespan(app: FastAPI):
load_slots_data(db) load_slots_data(db)
else: # dev or test environments else: # dev or test environments
print(f"{environment.capitalize()} environment: Regenerating database.") print(f"{environment.capitalize()} environment: Regenerating database.")
Base.metadata.drop_all(bind=engine) # Base.metadata.drop_all(bind=engine)
Base.metadata.create_all(bind=engine) # Base.metadata.create_all(bind=engine)
# from sqlalchemy.engine import reflection # from sqlalchemy.engine import reflection
# from app.models import ExperimentParameters # adjust the import as needed # from app.models import ExperimentParameters # adjust the import as needed
# inspector = reflection.Inspector.from_engine(engine) # inspector = reflection.Inspector.from_engine(engine)

2
backend/pyproject.toml
View File

@ -33,5 +33,5 @@ dependencies = [
[tool.pytest.ini_options] [tool.pytest.ini_options]
norecursedirs = ["backend/python-client"] norecursedirs = ["backend/python-client"]
# Or limit files explicitly # Or limit files explicitly
python_files = ["test_auth.py"]#, python_files = [""]#,""test_auth.py"]#,
#"test_contact.py"] #"test_contact.py"]